MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-12-g1a96800dc229) initialized Starting run at 05:22:46 UTC on 2023-05-15. Successfully read inputs file ... Castro git describe: 23.05-7-gb73e45af4 AMReX git describe: 23.05-12-g1a96800dc Microphysics git describe: 23.05-4-g0685d31f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016710307 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360273272 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350795458 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33145906 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332956362 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354116058 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.349585361 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314079116 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313432769 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314662596 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314937281 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010556983 seconds Ending run at 05:22:49 UTC on 2023-05-15. Run time = 3.549794436 Run time without initialization = 3.353851847 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.549 ... 3.55 ... 3.55 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2704 2.3444 2.4051 67.75% Gravity::make_radial_gravity() 21 0.3191 0.3313 0.3462 9.75% Castro::do_advance_ctu() 10 0.01145 0.07739 0.1544 4.35% Castro::estTimeStep() 21 0.02091 0.06832 0.1294 3.65% Castro::initData() 1 0.03845 0.08683 0.121 3.41% FabArray::setVal() 143 0.06332 0.07462 0.09018 2.54% FabArray::ParallelCopy_finish() 41 0.03632 0.05834 0.08262 2.33% amrex::Copy() 193 0.06224 0.07321 0.08092 2.28% Castro::reset_internal_energy(Fab) 1008 0.04766 0.04952 0.0515 1.45% Castro::normalize_species() 62 0.04072 0.04229 0.0438 1.23% FabArray::ParallelCopy_nowait() 41 0.03565 0.04116 0.04288 1.21% StateData::FillBoundary(geom) 41 0.03342 0.03602 0.03973 1.12% FillPatchIterator::Initialize 41 0.02983 0.03399 0.03814 1.07% Castro::construct_new_gravity_source() 10 0.02281 0.02624 0.03153 0.89% Gravity::interpolate_monopole_grav() 21 0.02795 0.02873 0.03073 0.87% Castro::initialize_do_advance() 10 0.01266 0.01812 0.02219 0.63% Castro::computeTemp() 63 0.01919 0.02003 0.021 0.59% VisMF::Write(FabArray) 2 0.01413 0.01472 0.01779 0.50% FabArray::Saxpy() 20 0.01223 0.01443 0.01523 0.43% Castro::initialize_advance() 10 0.008877 0.01165 0.01517 0.43% MultiFab::contains_nan() 20 0.01099 0.01201 0.01342 0.38% FabArray::setDomainBndry() 41 0.009041 0.01129 0.01266 0.36% Castro::construct_old_gravity_source() 10 0.007512 0.01034 0.01102 0.31% Amr::writePlotFile() 2 0.00745 0.01033 0.01099 0.31% Castro::initMFs() 1 0.00725 0.008669 0.01092 0.31% StateData::define() 4 0.006568 0.007099 0.008535 0.24% Castro::construct_new_source() 50 0.005668 0.006201 0.006539 0.18% main() 1 0.00556 0.006033 0.006371 0.18% Castro::enforce_min_density() 62 0.005724 0.005902 0.006143 0.17% Castro::swap_state_time_levels() 10 0.002768 0.004552 0.004829 0.14% Gravity::get_new_grav_vector() 11 0.00303 0.003686 0.00418 0.12% Amr::coarseTimeStep() 10 0.001275 0.002539 0.003596 0.10% Gravity::get_old_grav_vector() 10 0.001703 0.002335 0.002817 0.08% Castro::buildMetrics() 1 0.001878 0.002038 0.002469 0.07% Castro::finalize_do_advance() 10 0.0007149 0.001729 0.00216 0.06% Castro::expand_state() 10 0.0007782 0.0009615 0.001057 0.03% Amr::InitAmr() 1 0.0003211 0.0003947 0.0005303 0.01% Amr::timeStep() 10 0.000171 0.0002298 0.0003914 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002867 0.0002937 0.0003034 0.01% DistributionMapping::LeastUsedCPUs() 1 7.312e-06 0.0001561 0.0002325 0.01% Castro::clean_state() 62 0.0001351 0.0001424 0.0001526 0.00% Castro::finalize_advance() 10 8.042e-05 0.000101 0.0001267 0.00% StateDataPhysBCFunct::() 41 7.736e-05 9.677e-05 0.0001245 0.00% Castro::enforce_consistent_e() 1 8.091e-05 8.944e-05 0.0001091 0.00% Castro::construct_old_source() 50 5.227e-05 6.885e-05 8.331e-05 0.00% Castro::Castro() 1 6.898e-05 7.384e-05 8.181e-05 0.00% FabArray::ParallelCopy() 41 6.614e-05 7.194e-05 8.095e-05 0.00% FillPatchSingleLevel 41 6.601e-05 7.052e-05 8.013e-05 0.00% Amr::FinalizeInit() 1 3.752e-06 1.405e-05 7.844e-05 0.00% Castro::do_old_sources() 10 5.024e-05 6.066e-05 7.019e-05 0.00% Castro::do_new_sources() 10 4.998e-05 6.194e-05 6.925e-05 0.00% FabArrayBase::getCPC() 41 4.457e-05 5.326e-05 6.839e-05 0.00% Amr::writeSmallPlotFile() 1 2.574e-05 4.116e-05 6.142e-05 0.00% Castro::construct_old_gravity() 10 3.618e-05 4.306e-05 5.283e-05 0.00% Castro::advance() 10 3.193e-05 4.058e-05 5.248e-05 0.00% Castro::construct_new_gravity() 10 3.309e-05 4.12e-05 5.245e-05 0.00% Castro::subcycle_advance_ctu() 10 3.545e-05 4.443e-05 4.95e-05 0.00% Castro::apply_source_to_state() 20 3.51e-05 4.401e-05 4.859e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.123e-05 2.742e-05 3.588e-05 0.00% Amr::defBaseLevel() 1 1.739e-05 2.491e-05 3.097e-05 0.00% Castro::check_for_nan() 20 2.066e-05 2.365e-05 2.931e-05 0.00% FabArrayBase::CPC::define() 2 1.878e-05 2.459e-05 2.882e-05 0.00% Castro::enforce_speed_limit() 62 2.202e-05 2.483e-05 2.835e-05 0.00% Castro::post_timestep() 10 1.273e-05 1.522e-05 1.69e-05 0.00% Amr::initSubcycle() 1 1.042e-05 1.2e-05 1.592e-05 0.00% Gravity::swapTimeLevels() 10 1.133e-05 1.301e-05 1.481e-05 0.00% Castro::computeNewDt() 9 8.81e-06 1.131e-05 1.438e-05 0.00% Gravity::set_mass_offset() 10 8.481e-06 1.156e-05 1.435e-05 0.00% Castro::post_init() 1 3.24e-06 5.907e-06 1.182e-05 0.00% Castro::create_source_corrector() 10 7.615e-06 9.155e-06 1.025e-05 0.00% Castro::FluxRegCrseInit 10 6.758e-06 8.271e-06 9.391e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.225e-06 5.967e-06 8.839e-06 0.00% Amr::init() 1 2.111e-06 2.809e-06 5.89e-06 0.00% Castro::retry_advance_ctu() 10 4.838e-06 5.269e-06 5.885e-06 0.00% Amr::InitializeInit() 1 2.239e-06 3.055e-06 5.557e-06 0.00% Castro::computeInitialDt() 2 3.717e-06 4.295e-06 5.408e-06 0.00% Castro::post_regrid() 1 1.832e-06 3.213e-06 5.2e-06 0.00% Castro::FluxRegFineAdd() 10 2e-06 2.388e-06 2.901e-06 0.00% Amr::initialInit() 1 1.642e-06 2.163e-06 2.9e-06 0.00% DistributionMapping::Distribute() 1 9.19e-07 1.136e-06 1.359e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.549 3.55 3.55 100.00% Amr::coarseTimeStep() 10 3.337 3.337 3.337 94.00% Amr::timeStep() 10 3.324 3.325 3.326 93.70% Castro::advance() 10 3.308 3.309 3.31 93.23% Castro::subcycle_advance_ctu() 10 3.216 3.227 3.235 91.13% Castro::do_advance_ctu() 10 3.216 3.227 3.235 91.13% Castro::construct_ctu_hydro_source() 10 2.27 2.344 2.405 67.75% Gravity::make_radial_gravity() 21 0.335 0.3482 0.3605 10.15% Gravity::get_new_grav_vector() 11 0.2325 0.2331 0.2337 6.58% Castro::construct_old_gravity() 10 0.1925 0.2023 0.2123 5.98% Gravity::get_old_grav_vector() 10 0.1913 0.2014 0.2117 5.96% Castro::construct_new_gravity() 10 0.2024 0.2029 0.2035 5.73% Amr::init() 1 0.1952 0.1953 0.1954 5.51% FillPatchIterator::Initialize 41 0.1672 0.1811 0.1916 5.40% Castro::initialize_do_advance() 10 0.1628 0.1731 0.1841 5.18% Amr::initialInit() 1 0.1778 0.1782 0.1785 5.03% FillPatchSingleLevel 41 0.1193 0.1358 0.152 4.28% Amr::InitializeInit() 1 0.06006 0.111 0.1443 4.06% Amr::defBaseLevel() 1 0.06005 0.111 0.1443 4.06% Castro::expand_state() 10 0.1121 0.1248 0.1369 3.86% Castro::estTimeStep() 21 0.02091 0.06832 0.1294 3.65% Castro::initData() 1 0.0424 0.09074 0.1249 3.52% Castro::clean_state() 62 0.1128 0.1172 0.1215 3.42% FabArray::ParallelCopy() 41 0.07935 0.09965 0.1184 3.34% Amr::FinalizeInit() 1 0.03412 0.06718 0.1179 3.32% FabArray::setVal() 143 0.06332 0.07462 0.09018 2.54% Castro::initialize_advance() 10 0.06995 0.07761 0.08868 2.50% Castro::computeInitialDt() 2 0.002224 0.03544 0.08645 2.44% FabArray::ParallelCopy_finish() 41 0.03632 0.05834 0.08262 2.33% Castro::do_new_sources() 10 0.05913 0.06848 0.0822 2.32% amrex::Copy() 193 0.06224 0.07321 0.08092 2.28% Castro::computeTemp() 63 0.06713 0.06984 0.0728 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04794 0.04981 0.0518 1.46% Castro::reset_internal_energy(Fab) 1008 0.04766 0.04952 0.0515 1.45% Castro::do_old_sources() 10 0.04025 0.04499 0.04647 1.31% Castro::normalize_species() 62 0.04072 0.04229 0.0438 1.23% FabArray::ParallelCopy_nowait() 41 0.03573 0.04124 0.04296 1.21% StateDataPhysBCFunct::() 41 0.0335 0.03611 0.03984 1.12% StateData::FillBoundary(geom) 41 0.03342 0.03602 0.03973 1.12% Castro::construct_new_source() 50 0.02893 0.03245 0.03804 1.07% Castro::post_init() 1 0.031 0.03127 0.03154 0.89% Castro::construct_new_gravity_source() 10 0.02281 0.02624 0.03153 0.89% Gravity::interpolate_monopole_grav() 21 0.02795 0.02873 0.03073 0.87% Amr::writePlotFile() 2 0.02753 0.02783 0.02815 0.79% VisMF::Write(FabArray) 2 0.01413 0.01472 0.01779 0.50% Castro::post_timestep() 10 0.01543 0.01585 0.01634 0.46% Castro::Castro() 1 0.01076 0.01293 0.01531 0.43% Castro::apply_source_to_state() 20 0.01227 0.01447 0.01526 0.43% FabArray::Saxpy() 20 0.01223 0.01443 0.01523 0.43% Castro::check_for_nan() 20 0.01101 0.01203 0.01344 0.38% MultiFab::contains_nan() 20 0.01099 0.01201 0.01342 0.38% FabArray::setDomainBndry() 41 0.009041 0.01129 0.01266 0.36% Castro::construct_old_source() 50 0.007565 0.01041 0.0111 0.31% Castro::construct_old_gravity_source() 10 0.007512 0.01034 0.01102 0.31% Castro::initMFs() 1 0.00725 0.008669 0.01092 0.31% AmrLevel::AmrLevel(dm) 1 0.006597 0.007126 0.00857 0.24% StateData::define() 4 0.006568 0.007099 0.008535 0.24% Castro::computeNewDt() 9 0.00845 0.008456 0.008465 0.24% Castro::enforce_min_density() 62 0.005724 0.005902 0.006143 0.17% Castro::swap_state_time_levels() 10 0.002768 0.004552 0.004829 0.14% Castro::finalize_advance() 10 0.002939 0.003786 0.004752 0.13% Castro::buildMetrics() 1 0.002041 0.00222 0.002724 0.08% Castro::finalize_do_advance() 10 0.0007149 0.001729 0.00216 0.06% Castro::post_regrid() 1 0.001587 0.001693 0.00197 0.06% Amr::InitAmr() 1 0.0003317 0.0004067 0.0005461 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.265e-05 0.0001632 0.0002426 0.01% DistributionMapping::LeastUsedCPUs() 1 7.312e-06 0.0001561 0.0002325 0.01% Castro::enforce_consistent_e() 1 8.091e-05 8.944e-05 0.0001091 0.00% FabArrayBase::getCPC() 41 6.852e-05 7.785e-05 9.619e-05 0.00% Amr::writeSmallPlotFile() 1 2.574e-05 4.116e-05 6.142e-05 0.00% FabArrayBase::CPC::define() 2 1.878e-05 2.459e-05 2.882e-05 0.00% Castro::enforce_speed_limit() 62 2.202e-05 2.483e-05 2.835e-05 0.00% Amr::initSubcycle() 1 1.042e-05 1.2e-05 1.592e-05 0.00% Gravity::swapTimeLevels() 10 1.133e-05 1.301e-05 1.481e-05 0.00% Gravity::set_mass_offset() 10 8.481e-06 1.156e-05 1.435e-05 0.00% Castro::create_source_corrector() 10 7.615e-06 9.155e-06 1.025e-05 0.00% Castro::FluxRegCrseInit 10 6.758e-06 8.271e-06 9.391e-06 0.00% Castro::retry_advance_ctu() 10 4.838e-06 5.269e-06 5.885e-06 0.00% Castro::FluxRegFineAdd() 10 2e-06 2.388e-06 2.901e-06 0.00% DistributionMapping::Distribute() 1 9.19e-07 1.136e-06 1.359e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 39 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-12-g1a96800dc229) finalized