MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-14-g81e1ac377d54) initialized Starting run at 05:21:14 UTC on 2023-05-16. Successfully read inputs file ... Castro git describe: 23.05-7-gb73e45af4 AMReX git describe: 23.05-14-g81e1ac377 Microphysics git describe: 23.05-4-g0685d31f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017245645 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.384205992 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.361599271 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.379542809 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332305838 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367377634 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33067849 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312154977 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312177976 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312844911 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311521343 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.048403735 seconds Ending run at 05:21:18 UTC on 2023-05-16. Run time = 3.687941004 Run time without initialization = 3.46037857 Average number of zones advanced per microsecond: 0.758 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.687 ... 3.688 ... 3.688 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3552 2.3785 2.4072 65.27% Gravity::make_radial_gravity() 21 0.3052 0.3197 0.3361 9.11% Castro::do_advance_ctu() 10 0.105 0.1352 0.1617 4.39% Castro::estTimeStep() 21 0.02049 0.09996 0.1558 4.22% Castro::initData() 1 0.03852 0.08694 0.1532 4.15% amrex::Copy() 193 0.06242 0.07403 0.08346 2.26% FabArray::setVal() 143 0.06495 0.07111 0.08087 2.19% FabArray::ParallelCopy_finish() 41 0.03699 0.04878 0.06577 1.78% Castro::reset_internal_energy(Fab) 1008 0.04805 0.04958 0.05211 1.41% Amr::writePlotFile() 2 0.04494 0.04889 0.04991 1.35% FabArray::ParallelCopy_nowait() 41 0.03629 0.04203 0.04354 1.18% Castro::normalize_species() 62 0.04097 0.0418 0.04316 1.17% StateData::FillBoundary(geom) 41 0.03304 0.03631 0.03916 1.06% FillPatchIterator::Initialize 41 0.02975 0.03517 0.03754 1.02% Gravity::interpolate_monopole_grav() 21 0.02757 0.02817 0.02867 0.78% Castro::construct_new_gravity_source() 10 0.02255 0.02458 0.02748 0.75% Castro::initialize_do_advance() 10 0.01262 0.01803 0.02152 0.58% Castro::computeTemp() 63 0.01935 0.01993 0.0212 0.57% VisMF::Write(FabArray) 2 0.01379 0.01452 0.01821 0.49% Castro::initialize_advance() 10 0.009693 0.0124 0.01536 0.42% FabArray::Saxpy() 20 0.01332 0.014 0.01467 0.40% MultiFab::contains_nan() 20 0.0112 0.01182 0.0132 0.36% FabArray::setDomainBndry() 41 0.008873 0.01183 0.0128 0.35% Castro::construct_old_gravity_source() 10 0.007858 0.01012 0.01057 0.29% Castro::initMFs() 1 0.007192 0.008263 0.01055 0.29% StateData::define() 4 0.005953 0.00686 0.008688 0.24% main() 1 0.005861 0.006433 0.00685 0.19% Castro::construct_new_source() 50 0.005623 0.00621 0.006474 0.18% Castro::enforce_min_density() 62 0.005773 0.005982 0.00623 0.17% Castro::swap_state_time_levels() 10 0.003406 0.004663 0.00491 0.13% Gravity::get_new_grav_vector() 11 0.002988 0.003693 0.004027 0.11% Amr::coarseTimeStep() 10 0.001326 0.002423 0.003132 0.08% Gravity::get_old_grav_vector() 10 0.001836 0.002464 0.002794 0.08% Castro::buildMetrics() 1 0.001681 0.001974 0.002527 0.07% Castro::finalize_do_advance() 10 0.0005579 0.001635 0.002136 0.06% Castro::expand_state() 10 0.00062 0.0009653 0.001154 0.03% Amr::InitAmr() 1 0.0002879 0.0003691 0.0005395 0.01% Amr::timeStep() 10 0.0001857 0.0002491 0.0004363 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002832 0.0003045 0.0003457 0.01% DistributionMapping::LeastUsedCPUs() 1 6.354e-06 0.0001873 0.0002778 0.01% Castro::clean_state() 62 0.0001379 0.0001521 0.0001657 0.00% Castro::enforce_consistent_e() 1 7.685e-05 9.553e-05 0.0001462 0.00% StateDataPhysBCFunct::() 41 9.113e-05 0.0001128 0.000144 0.00% Castro::finalize_advance() 10 9.833e-05 0.0001067 0.0001162 0.00% Amr::FinalizeInit() 1 3.873e-06 1.511e-05 8.732e-05 0.00% FillPatchSingleLevel 41 6.003e-05 7.351e-05 8.617e-05 0.00% Castro::Castro() 1 5.383e-05 6.686e-05 8.5e-05 0.00% Castro::construct_old_source() 50 5.585e-05 6.794e-05 8.39e-05 0.00% FabArray::ParallelCopy() 41 6.896e-05 7.646e-05 8.271e-05 0.00% Castro::do_old_sources() 10 5.168e-05 6.065e-05 7.195e-05 0.00% Castro::do_new_sources() 10 5.455e-05 6.271e-05 6.861e-05 0.00% FabArrayBase::getCPC() 41 3.867e-05 6.071e-05 6.856e-05 0.00% Amr::writeSmallPlotFile() 1 2.522e-05 5.918e-05 6.833e-05 0.00% Castro::advance() 10 3.634e-05 4.535e-05 6.046e-05 0.00% Castro::subcycle_advance_ctu() 10 4.056e-05 4.664e-05 5.691e-05 0.00% Castro::construct_new_gravity() 10 3.644e-05 4.337e-05 5.218e-05 0.00% Castro::apply_source_to_state() 20 3.379e-05 4.498e-05 5.057e-05 0.00% Castro::construct_old_gravity() 10 3.458e-05 3.969e-05 4.491e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.07e-05 2.933e-05 4.337e-05 0.00% Amr::defBaseLevel() 1 1.687e-05 2.339e-05 3.449e-05 0.00% Castro::enforce_speed_limit() 62 2.168e-05 2.695e-05 3.428e-05 0.00% FabArrayBase::CPC::define() 2 2.251e-05 2.405e-05 2.804e-05 0.00% Castro::post_timestep() 10 1.372e-05 1.643e-05 2.611e-05 0.00% Castro::check_for_nan() 20 1.868e-05 2.16e-05 2.497e-05 0.00% Gravity::swapTimeLevels() 10 1.093e-05 1.338e-05 1.786e-05 0.00% Castro::create_source_corrector() 10 7.384e-06 1.017e-05 1.651e-05 0.00% Amr::initSubcycle() 1 9.118e-06 1.118e-05 1.596e-05 0.00% Gravity::set_mass_offset() 10 1.058e-05 1.213e-05 1.35e-05 0.00% Castro::computeNewDt() 9 1.048e-05 1.176e-05 1.285e-05 0.00% Castro::FluxRegCrseInit 10 7.136e-06 8.782e-06 1.195e-05 0.00% Amr::init() 1 1.982e-06 3.859e-06 8.737e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.762e-06 4.741e-06 7.092e-06 0.00% Castro::retry_advance_ctu() 10 4.293e-06 5.327e-06 6.09e-06 0.00% Amr::InitializeInit() 1 2.161e-06 2.765e-06 5.582e-06 0.00% Castro::post_init() 1 3.415e-06 4.214e-06 5.523e-06 0.00% Castro::computeInitialDt() 2 3.488e-06 4.44e-06 4.952e-06 0.00% Castro::post_regrid() 1 1.637e-06 3.323e-06 4.41e-06 0.00% Castro::FluxRegFineAdd() 10 1.832e-06 2.352e-06 3.029e-06 0.00% Amr::initialInit() 1 1.461e-06 1.688e-06 1.965e-06 0.00% DistributionMapping::Distribute() 1 8.44e-07 1.027e-06 1.319e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.687 3.688 3.688 100.00% Amr::coarseTimeStep() 10 3.405 3.405 3.405 92.33% Amr::timeStep() 10 3.392 3.393 3.394 92.03% Castro::advance() 10 3.376 3.377 3.377 91.58% Castro::subcycle_advance_ctu() 10 3.291 3.298 3.303 89.57% Castro::do_advance_ctu() 10 3.291 3.298 3.303 89.57% Castro::construct_ctu_hydro_source() 10 2.355 2.379 2.407 65.27% Gravity::make_radial_gravity() 21 0.3216 0.337 0.3502 9.50% Amr::init() 1 0.2268 0.227 0.2271 6.16% Gravity::get_new_grav_vector() 11 0.2175 0.2199 0.2215 6.01% Castro::construct_old_gravity() 10 0.1904 0.201 0.2114 5.73% Gravity::get_old_grav_vector() 10 0.1897 0.2003 0.2107 5.71% Amr::initialInit() 1 0.2092 0.2094 0.2096 5.68% Castro::construct_new_gravity() 10 0.1932 0.1949 0.196 5.31% FillPatchIterator::Initialize 41 0.1609 0.1745 0.1856 5.03% Amr::InitializeInit() 1 0.05961 0.1102 0.1806 4.90% Amr::defBaseLevel() 1 0.0596 0.1102 0.1806 4.90% Castro::initialize_do_advance() 10 0.1517 0.1672 0.1782 4.83% Castro::initData() 1 0.04232 0.09091 0.1569 4.26% Castro::estTimeStep() 21 0.02049 0.09996 0.1558 4.22% Amr::FinalizeInit() 1 0.02861 0.09921 0.1498 4.06% FillPatchSingleLevel 41 0.1154 0.1275 0.136 3.69% Castro::expand_state() 10 0.1068 0.1191 0.1301 3.53% Castro::computeInitialDt() 2 0.002221 0.07284 0.1235 3.35% Castro::clean_state() 62 0.1139 0.1167 0.122 3.31% FabArray::ParallelCopy() 41 0.07983 0.09097 0.1022 2.77% amrex::Copy() 193 0.06242 0.07403 0.08346 2.26% Castro::initialize_advance() 10 0.07053 0.07577 0.08231 2.23% FabArray::setVal() 143 0.06495 0.07111 0.08087 2.19% Castro::computeTemp() 63 0.06769 0.06981 0.07364 2.00% Castro::do_new_sources() 10 0.05986 0.06484 0.07314 1.98% Amr::writePlotFile() 2 0.06586 0.06607 0.06628 1.80% FabArray::ParallelCopy_finish() 41 0.03699 0.04878 0.06577 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04835 0.04988 0.05243 1.42% Castro::reset_internal_energy(Fab) 1008 0.04805 0.04958 0.05211 1.41% Castro::do_old_sources() 10 0.04223 0.04506 0.04735 1.28% FabArray::ParallelCopy_nowait() 41 0.03639 0.04212 0.04362 1.18% Castro::normalize_species() 62 0.04097 0.0418 0.04316 1.17% StateDataPhysBCFunct::() 41 0.03317 0.03643 0.03926 1.06% StateData::FillBoundary(geom) 41 0.03304 0.03631 0.03916 1.06% Castro::construct_new_source() 50 0.02876 0.03079 0.03395 0.92% Gravity::interpolate_monopole_grav() 21 0.02757 0.02817 0.02867 0.78% Castro::construct_new_gravity_source() 10 0.02255 0.02458 0.02748 0.75% Castro::post_init() 1 0.02579 0.02604 0.02619 0.71% VisMF::Write(FabArray) 2 0.01379 0.01452 0.01821 0.49% Castro::post_timestep() 10 0.01559 0.016 0.01647 0.45% Castro::Castro() 1 0.01094 0.01217 0.01494 0.41% Castro::apply_source_to_state() 20 0.01337 0.01404 0.01472 0.40% FabArray::Saxpy() 20 0.01332 0.014 0.01467 0.40% Castro::check_for_nan() 20 0.01122 0.01185 0.01323 0.36% MultiFab::contains_nan() 20 0.0112 0.01182 0.0132 0.36% FabArray::setDomainBndry() 41 0.008873 0.01183 0.0128 0.35% Castro::construct_old_source() 50 0.007914 0.01019 0.01064 0.29% Castro::construct_old_gravity_source() 10 0.007858 0.01012 0.01057 0.29% Castro::initMFs() 1 0.007192 0.008263 0.01055 0.29% AmrLevel::AmrLevel(dm) 1 0.00598 0.006889 0.008725 0.24% StateData::define() 4 0.005953 0.00686 0.008688 0.24% Castro::computeNewDt() 9 0.008467 0.008475 0.008482 0.23% Castro::enforce_min_density() 62 0.005773 0.005982 0.00623 0.17% Castro::swap_state_time_levels() 10 0.003406 0.004663 0.00491 0.13% Castro::finalize_advance() 10 0.002916 0.003411 0.004097 0.11% Castro::buildMetrics() 1 0.001817 0.00214 0.002756 0.07% Castro::finalize_do_advance() 10 0.0005579 0.001635 0.002136 0.06% Castro::post_regrid() 1 0.001547 0.001578 0.00162 0.04% Amr::InitAmr() 1 0.000297 0.0003803 0.0005547 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.182e-05 0.000193 0.000286 0.01% DistributionMapping::LeastUsedCPUs() 1 6.354e-06 0.0001873 0.0002778 0.01% Castro::enforce_consistent_e() 1 7.685e-05 9.553e-05 0.0001462 0.00% FabArrayBase::getCPC() 41 6.312e-05 8.477e-05 9.629e-05 0.00% Amr::writeSmallPlotFile() 1 2.522e-05 5.918e-05 6.833e-05 0.00% Castro::enforce_speed_limit() 62 2.168e-05 2.695e-05 3.428e-05 0.00% FabArrayBase::CPC::define() 2 2.251e-05 2.405e-05 2.804e-05 0.00% Gravity::swapTimeLevels() 10 1.093e-05 1.338e-05 1.786e-05 0.00% Castro::create_source_corrector() 10 7.384e-06 1.017e-05 1.651e-05 0.00% Amr::initSubcycle() 1 9.118e-06 1.118e-05 1.596e-05 0.00% Gravity::set_mass_offset() 10 1.058e-05 1.213e-05 1.35e-05 0.00% Castro::FluxRegCrseInit 10 7.136e-06 8.782e-06 1.195e-05 0.00% Castro::retry_advance_ctu() 10 4.293e-06 5.327e-06 6.09e-06 0.00% Castro::FluxRegFineAdd() 10 1.832e-06 2.352e-06 3.029e-06 0.00% DistributionMapping::Distribute() 1 8.44e-07 1.027e-06 1.319e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-14-g81e1ac377d54) finalized