MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-14-g81e1ac377d54) initialized Starting run at 05:25:49 UTC on 2023-05-17. Successfully read inputs file ... Castro git describe: 23.05-12-g8a42238f1 AMReX git describe: 23.05-14-g81e1ac377 Microphysics git describe: 23.05-7-g600b619d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.187088671 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.387833592 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343293697 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334529477 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336655044 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.37077012 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.338252206 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317227602 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31751608 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31845991 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31885074 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010341561 seconds Ending run at 05:25:53 UTC on 2023-05-17. Run time = 3.782012931 Run time without initialization = 3.401014848 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.781 ... 3.781 ... 3.782 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2898 2.3666 2.4206 64.00% Gravity::make_radial_gravity() 21 0.3313 0.3397 0.3504 9.27% Castro::do_advance_ctu() 10 0.06578 0.1209 0.2005 5.30% Amr::writePlotFile() 2 0.1769 0.1806 0.1818 4.81% Castro::initData() 1 0.04426 0.08495 0.137 3.62% Castro::estTimeStep() 21 0.03786 0.08736 0.1278 3.38% FabArray::setVal() 143 0.06293 0.06876 0.0818 2.16% amrex::Copy() 193 0.06181 0.06862 0.07789 2.06% FabArray::ParallelCopy_finish() 41 0.04222 0.05007 0.06264 1.66% Castro::reset_internal_energy(Fab) 1008 0.04841 0.0498 0.05115 1.35% Castro::normalize_species() 62 0.04101 0.0419 0.04318 1.14% FabArray::ParallelCopy_nowait() 41 0.03707 0.03988 0.04181 1.11% StateData::FillBoundary(geom) 41 0.03269 0.03606 0.03956 1.05% FillPatchIterator::Initialize 41 0.0297 0.03359 0.0369 0.98% Gravity::interpolate_monopole_grav() 21 0.02778 0.02847 0.02949 0.78% Castro::construct_new_gravity_source() 10 0.02235 0.02389 0.02737 0.72% Castro::computeTemp() 63 0.0189 0.01977 0.02062 0.55% Castro::initialize_do_advance() 10 0.01253 0.01622 0.01868 0.49% VisMF::Write(FabArray) 2 0.01347 0.01452 0.01803 0.48% Castro::initialize_advance() 10 0.0104 0.01303 0.01606 0.42% FabArray::Saxpy() 20 0.01223 0.01312 0.0138 0.37% FabArray::setDomainBndry() 41 0.008947 0.01087 0.01228 0.32% MultiFab::contains_nan() 20 0.0113 0.01169 0.01219 0.32% Castro::construct_old_gravity_source() 10 0.007851 0.009855 0.01068 0.28% Castro::initMFs() 1 0.007156 0.007884 0.009188 0.24% main() 1 0.005131 0.005855 0.006677 0.18% StateData::define() 4 0.005925 0.006407 0.006589 0.17% Castro::construct_new_source() 50 0.005721 0.006035 0.00625 0.17% Castro::enforce_min_density() 62 0.005572 0.005911 0.006206 0.16% Castro::swap_state_time_levels() 10 0.003275 0.004365 0.005753 0.15% Gravity::get_new_grav_vector() 11 0.002926 0.003565 0.003972 0.11% Gravity::get_old_grav_vector() 10 0.001789 0.002336 0.002812 0.07% Amr::coarseTimeStep() 10 0.001457 0.002184 0.002771 0.07% Castro::buildMetrics() 1 0.001688 0.001862 0.002127 0.06% Castro::finalize_do_advance() 10 0.0008291 0.001278 0.001629 0.04% Castro::expand_state() 10 0.0006287 0.0007284 0.0008363 0.02% Amr::InitAmr() 1 0.000293 0.0003592 0.0006729 0.02% DistributionMapping::LeastUsedCPUs() 1 1.066e-05 0.0003652 0.0004409 0.01% Amr::timeStep() 10 0.0001754 0.0002335 0.0004228 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002928 0.0003126 0.000362 0.01% Castro::clean_state() 62 0.0001328 0.0001561 0.0001778 0.00% StateDataPhysBCFunct::() 41 8.153e-05 0.0001006 0.0001387 0.00% Castro::finalize_advance() 10 7.97e-05 0.0001058 0.0001361 0.00% Castro::enforce_consistent_e() 1 8.663e-05 9.56e-05 0.0001175 0.00% Amr::FinalizeInit() 1 3.842e-06 1.516e-05 8.919e-05 0.00% Amr::writeSmallPlotFile() 1 4.302e-05 6.038e-05 8.549e-05 0.00% Castro::construct_old_source() 50 4.86e-05 6.401e-05 8.184e-05 0.00% Castro::Castro() 1 6.025e-05 6.562e-05 7.854e-05 0.00% FillPatchSingleLevel 41 6.202e-05 7.205e-05 7.829e-05 0.00% FabArray::ParallelCopy() 41 6.389e-05 7.075e-05 7.644e-05 0.00% Castro::do_old_sources() 10 4.603e-05 5.948e-05 7.387e-05 0.00% Castro::do_new_sources() 10 4.685e-05 6.142e-05 6.772e-05 0.00% FabArrayBase::getCPC() 41 3.743e-05 5e-05 6.668e-05 0.00% Castro::subcycle_advance_ctu() 10 4.042e-05 4.531e-05 5.718e-05 0.00% Castro::apply_source_to_state() 20 3.296e-05 4.381e-05 4.843e-05 0.00% Castro::construct_new_gravity() 10 3.43e-05 4.198e-05 4.742e-05 0.00% Castro::advance() 10 3.403e-05 3.809e-05 4.359e-05 0.00% Castro::construct_old_gravity() 10 3.258e-05 3.805e-05 4.265e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.046e-05 2.923e-05 3.78e-05 0.00% Amr::defBaseLevel() 1 1.888e-05 2.354e-05 3.666e-05 0.00% Castro::enforce_speed_limit() 62 2.319e-05 2.818e-05 3.4e-05 0.00% FabArrayBase::CPC::define() 2 2.219e-05 2.439e-05 2.648e-05 0.00% Castro::check_for_nan() 20 2.125e-05 2.339e-05 2.589e-05 0.00% Castro::post_timestep() 10 1.341e-05 1.546e-05 1.848e-05 0.00% Gravity::swapTimeLevels() 10 9.983e-06 1.376e-05 1.607e-05 0.00% Gravity::set_mass_offset() 10 9.248e-06 1.165e-05 1.353e-05 0.00% Castro::computeNewDt() 9 8.689e-06 1.067e-05 1.267e-05 0.00% Castro::create_source_corrector() 10 6.846e-06 8.305e-06 1.087e-05 0.00% Amr::initSubcycle() 1 9.536e-06 1.03e-05 1.087e-05 0.00% Castro::post_init() 1 3.065e-06 6.557e-06 1.067e-05 0.00% Castro::FluxRegCrseInit 10 6.667e-06 7.902e-06 9.857e-06 0.00% Amr::init() 1 2.055e-06 3.754e-06 9.045e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.347e-06 4.936e-06 7.047e-06 0.00% Castro::retry_advance_ctu() 10 4.654e-06 5.605e-06 6.57e-06 0.00% Amr::InitializeInit() 1 2.017e-06 2.741e-06 6.047e-06 0.00% Castro::computeInitialDt() 2 3.981e-06 4.434e-06 5.116e-06 0.00% Castro::post_regrid() 1 1.935e-06 2.925e-06 3.687e-06 0.00% Castro::FluxRegFineAdd() 10 1.953e-06 2.503e-06 2.823e-06 0.00% Amr::initialInit() 1 1.14e-06 1.665e-06 1.919e-06 0.00% DistributionMapping::Distribute() 1 9.42e-07 1.034e-06 1.442e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.781 3.781 3.782 100.00% Amr::coarseTimeStep() 10 3.384 3.384 3.384 89.48% Amr::timeStep() 10 3.371 3.372 3.373 89.17% Castro::advance() 10 3.355 3.356 3.356 88.74% Castro::subcycle_advance_ctu() 10 3.272 3.277 3.279 86.69% Castro::do_advance_ctu() 10 3.272 3.277 3.279 86.69% Castro::construct_ctu_hydro_source() 10 2.29 2.367 2.421 64.00% Amr::init() 1 0.3801 0.3805 0.3806 10.06% Gravity::make_radial_gravity() 21 0.347 0.3558 0.3648 9.65% Gravity::get_new_grav_vector() 11 0.2247 0.2266 0.2279 6.02% Castro::construct_old_gravity() 10 0.205 0.2112 0.2177 5.76% Gravity::get_old_grav_vector() 10 0.2043 0.2105 0.2171 5.74% Castro::construct_new_gravity() 10 0.1974 0.1986 0.1994 5.27% Amr::writePlotFile() 2 0.1975 0.1978 0.198 5.24% Amr::initialInit() 1 0.1928 0.1931 0.1935 5.12% FillPatchIterator::Initialize 41 0.1543 0.1708 0.1763 4.66% Castro::initialize_do_advance() 10 0.1504 0.1627 0.1728 4.57% Amr::InitializeInit() 1 0.06758 0.1081 0.1612 4.26% Amr::defBaseLevel() 1 0.06758 0.1081 0.1612 4.26% Castro::initData() 1 0.04827 0.08915 0.1415 3.74% FillPatchSingleLevel 41 0.1151 0.1263 0.1357 3.59% Castro::estTimeStep() 21 0.03786 0.08736 0.1278 3.38% Amr::FinalizeInit() 1 0.03192 0.08498 0.1253 3.31% Castro::expand_state() 10 0.1015 0.1164 0.1243 3.29% Castro::clean_state() 62 0.1138 0.1168 0.1193 3.16% FabArray::ParallelCopy() 41 0.08223 0.0901 0.0999 2.64% Castro::computeInitialDt() 2 0.002792 0.05583 0.09599 2.54% FabArray::setVal() 143 0.06293 0.06876 0.0818 2.16% Castro::initialize_advance() 10 0.07361 0.07575 0.0804 2.13% amrex::Copy() 193 0.06181 0.06862 0.07789 2.06% Castro::do_new_sources() 10 0.05823 0.06197 0.07306 1.93% Castro::computeTemp() 63 0.06809 0.06988 0.0721 1.91% FabArray::ParallelCopy_finish() 41 0.04222 0.05007 0.06264 1.66% Castro::reset_internal_energy(MultiFab) 63 0.0487 0.05011 0.05149 1.36% Castro::reset_internal_energy(Fab) 1008 0.04841 0.0498 0.05115 1.35% Castro::do_old_sources() 10 0.03997 0.04391 0.0458 1.21% Castro::normalize_species() 62 0.04101 0.0419 0.04318 1.14% FabArray::ParallelCopy_nowait() 41 0.03713 0.03996 0.04188 1.11% StateDataPhysBCFunct::() 41 0.03278 0.03616 0.03966 1.05% StateData::FillBoundary(geom) 41 0.03269 0.03606 0.03956 1.05% Castro::construct_new_source() 50 0.02842 0.02993 0.03357 0.89% Gravity::interpolate_monopole_grav() 21 0.02778 0.02847 0.02949 0.78% Castro::post_init() 1 0.02885 0.02906 0.02924 0.77% Castro::construct_new_gravity_source() 10 0.02235 0.02389 0.02737 0.72% VisMF::Write(FabArray) 2 0.01347 0.01452 0.01803 0.48% Castro::post_timestep() 10 0.01563 0.01603 0.01653 0.44% Castro::apply_source_to_state() 20 0.01227 0.01316 0.01385 0.37% FabArray::Saxpy() 20 0.01223 0.01312 0.0138 0.37% Castro::Castro() 1 0.01066 0.01211 0.01369 0.36% FabArray::setDomainBndry() 41 0.008947 0.01087 0.01228 0.32% Castro::check_for_nan() 20 0.01132 0.01172 0.01222 0.32% MultiFab::contains_nan() 20 0.0113 0.01169 0.01219 0.32% Castro::construct_old_source() 50 0.007902 0.009919 0.01076 0.28% Castro::construct_old_gravity_source() 10 0.007851 0.009855 0.01068 0.28% Castro::initMFs() 1 0.007156 0.007884 0.009188 0.24% Castro::computeNewDt() 9 0.008406 0.008431 0.008453 0.22% AmrLevel::AmrLevel(dm) 1 0.00595 0.006436 0.006616 0.17% StateData::define() 4 0.005925 0.006407 0.006589 0.17% Castro::enforce_min_density() 62 0.005572 0.005911 0.006206 0.16% Castro::swap_state_time_levels() 10 0.003275 0.004365 0.005753 0.15% Castro::finalize_advance() 10 0.002959 0.0032 0.003801 0.10% Castro::buildMetrics() 1 0.001838 0.002028 0.002304 0.06% Castro::post_regrid() 1 0.00156 0.001712 0.001917 0.05% Castro::finalize_do_advance() 10 0.0008291 0.001278 0.001629 0.04% Amr::InitAmr() 1 0.0003025 0.0003695 0.0006837 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.67e-05 0.0003712 0.0004489 0.01% DistributionMapping::LeastUsedCPUs() 1 1.066e-05 0.0003652 0.0004409 0.01% Castro::enforce_consistent_e() 1 8.663e-05 9.56e-05 0.0001175 0.00% FabArrayBase::getCPC() 41 6.172e-05 7.44e-05 9.083e-05 0.00% Amr::writeSmallPlotFile() 1 4.302e-05 6.038e-05 8.549e-05 0.00% Castro::enforce_speed_limit() 62 2.319e-05 2.818e-05 3.4e-05 0.00% FabArrayBase::CPC::define() 2 2.219e-05 2.439e-05 2.648e-05 0.00% Gravity::swapTimeLevels() 10 9.983e-06 1.376e-05 1.607e-05 0.00% Gravity::set_mass_offset() 10 9.248e-06 1.165e-05 1.353e-05 0.00% Castro::create_source_corrector() 10 6.846e-06 8.305e-06 1.087e-05 0.00% Amr::initSubcycle() 1 9.536e-06 1.03e-05 1.087e-05 0.00% Castro::FluxRegCrseInit 10 6.667e-06 7.902e-06 9.857e-06 0.00% Castro::retry_advance_ctu() 10 4.654e-06 5.605e-06 6.57e-06 0.00% Castro::FluxRegFineAdd() 10 1.953e-06 2.503e-06 2.823e-06 0.00% DistributionMapping::Distribute() 1 9.42e-07 1.034e-06 1.442e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 38 B 75 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-14-g81e1ac377d54) finalized