MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-15-g23b157942e41) initialized Starting run at 05:23:16 UTC on 2023-05-18. Successfully read inputs file ... Castro git describe: 23.05-14-ga1a1083b3 AMReX git describe: 23.05-15-g23b157942 Microphysics git describe: 23.05-7-g600b619d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016189816 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368756094 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351771623 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333190963 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333004125 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367387464 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345700776 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316394474 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314928096 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314262536 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313601764 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010501911 seconds Ending run at 05:23:20 UTC on 2023-05-18. Run time = 3.598718476 Run time without initialization = 3.376085836 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.598 ... 3.599 ... 3.599 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3197 2.3688 2.4294 67.50% Gravity::make_radial_gravity() 21 0.3238 0.3313 0.3454 9.60% Castro::initData() 1 0.06602 0.09296 0.1465 4.07% Castro::do_advance_ctu() 10 0.0239 0.0867 0.1376 3.82% Castro::estTimeStep() 21 0.03967 0.08983 0.1282 3.56% FabArray::setVal() 143 0.06111 0.07033 0.08501 2.36% FabArray::ParallelCopy_finish() 41 0.03586 0.05453 0.08394 2.33% amrex::Copy() 193 0.06198 0.07329 0.0817 2.27% Castro::reset_internal_energy(Fab) 1008 0.04916 0.0504 0.05174 1.44% Castro::normalize_species() 62 0.04085 0.04183 0.04415 1.23% FabArray::ParallelCopy_nowait() 41 0.03717 0.04106 0.04264 1.18% StateData::FillBoundary(geom) 41 0.03353 0.03552 0.03756 1.04% FillPatchIterator::Initialize 41 0.02952 0.03353 0.03574 0.99% Castro::construct_new_gravity_source() 10 0.02255 0.02539 0.02977 0.83% Gravity::interpolate_monopole_grav() 21 0.02789 0.02837 0.02893 0.80% Castro::initialize_do_advance() 10 0.0128 0.01796 0.02127 0.59% Castro::computeTemp() 63 0.01891 0.01982 0.02111 0.59% VisMF::Write(FabArray) 2 0.01412 0.01471 0.0173 0.48% FabArray::Saxpy() 20 0.01251 0.0139 0.01479 0.41% Castro::initialize_advance() 10 0.004116 0.01051 0.01452 0.40% MultiFab::contains_nan() 20 0.01138 0.01192 0.01252 0.35% FabArray::setDomainBndry() 41 0.008946 0.01113 0.01242 0.35% Castro::construct_old_gravity_source() 10 0.007442 0.01025 0.0108 0.30% Castro::initMFs() 1 0.007065 0.008758 0.01048 0.29% Amr::writePlotFile() 2 0.006893 0.009638 0.01031 0.29% StateData::define() 4 0.005863 0.007209 0.00853 0.24% Castro::enforce_min_density() 62 0.005565 0.005992 0.006796 0.19% Castro::construct_new_source() 50 0.005754 0.006179 0.006389 0.18% Gravity::get_new_grav_vector() 11 0.003167 0.003982 0.006308 0.18% main() 1 0.005509 0.005749 0.005921 0.16% Castro::swap_state_time_levels() 10 0.003439 0.004583 0.004816 0.13% Amr::coarseTimeStep() 10 0.001368 0.002735 0.00352 0.10% Gravity::get_old_grav_vector() 10 0.001915 0.002436 0.002921 0.08% Castro::buildMetrics() 1 0.001669 0.00206 0.002445 0.07% Castro::finalize_do_advance() 10 0.0006089 0.001685 0.002097 0.06% Castro::expand_state() 10 0.0007611 0.001002 0.001214 0.03% Amr::InitAmr() 1 0.0002862 0.0004171 0.0006748 0.02% DistributionMapping::LeastUsedCPUs() 1 1.155e-05 0.0003144 0.0004681 0.01% Amr::timeStep() 10 0.0001632 0.0002244 0.0004272 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002949 0.0003031 0.0003156 0.01% Castro::clean_state() 62 0.0001382 0.000154 0.0001945 0.01% Castro::enforce_consistent_e() 1 8.539e-05 0.0001115 0.0001476 0.00% Castro::finalize_advance() 10 9.261e-05 0.0001058 0.0001236 0.00% StateDataPhysBCFunct::() 41 8.495e-05 9.774e-05 0.0001216 0.00% Castro::Castro() 1 5.854e-05 7.132e-05 8.859e-05 0.00% Amr::FinalizeInit() 1 4.582e-06 1.535e-05 8.248e-05 0.00% Castro::do_new_sources() 10 5.163e-05 6.315e-05 7.984e-05 0.00% FabArray::ParallelCopy() 41 6.671e-05 7.146e-05 7.857e-05 0.00% FillPatchSingleLevel 41 6.07e-05 6.804e-05 7.661e-05 0.00% Castro::construct_old_source() 50 4.257e-05 6.329e-05 7.327e-05 0.00% Castro::do_old_sources() 10 4.855e-05 5.929e-05 6.761e-05 0.00% FabArrayBase::getCPC() 41 4.69e-05 5.674e-05 6.441e-05 0.00% Amr::writeSmallPlotFile() 1 2.493e-05 4.537e-05 6.044e-05 0.00% Castro::apply_source_to_state() 20 4.221e-05 4.72e-05 5.53e-05 0.00% Castro::subcycle_advance_ctu() 10 3.973e-05 4.537e-05 5.356e-05 0.00% Castro::advance() 10 3.697e-05 4.268e-05 5.051e-05 0.00% Castro::construct_new_gravity() 10 3.545e-05 4.152e-05 4.986e-05 0.00% Castro::construct_old_gravity() 10 3.524e-05 4.149e-05 4.858e-05 0.00% Amr::defBaseLevel() 1 2.905e-05 3.664e-05 4.193e-05 0.00% Castro::check_for_nan() 20 2.068e-05 2.343e-05 3.311e-05 0.00% Castro::enforce_speed_limit() 62 2.164e-05 2.56e-05 3.207e-05 0.00% FabArrayBase::CPC::define() 2 2.003e-05 2.349e-05 2.912e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.198e-05 1.767e-05 2.367e-05 0.00% Gravity::set_mass_offset() 10 9.345e-06 1.184e-05 1.715e-05 0.00% Amr::initSubcycle() 1 9.473e-06 1.285e-05 1.686e-05 0.00% Gravity::swapTimeLevels() 10 7.365e-06 1.245e-05 1.576e-05 0.00% Castro::post_timestep() 10 1.346e-05 1.461e-05 1.537e-05 0.00% Castro::computeNewDt() 9 7.635e-06 9.619e-06 1.191e-05 0.00% Castro::create_source_corrector() 10 6.887e-06 8.596e-06 9.961e-06 0.00% Castro::FluxRegCrseInit 10 7.754e-06 8.631e-06 9.544e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.883e-06 5.144e-06 7.295e-06 0.00% Amr::InitializeInit() 1 2.188e-06 3.221e-06 7.235e-06 0.00% Castro::post_regrid() 1 2.286e-06 4e-06 6.814e-06 0.00% Castro::retry_advance_ctu() 10 4.956e-06 5.399e-06 6.334e-06 0.00% Castro::computeInitialDt() 2 3.202e-06 4.301e-06 5.587e-06 0.00% Castro::post_init() 1 3.2e-06 4.001e-06 4.768e-06 0.00% Amr::init() 1 1.962e-06 2.565e-06 3.219e-06 0.00% Castro::FluxRegFineAdd() 10 1.721e-06 2.25e-06 2.563e-06 0.00% Amr::initialInit() 1 1.294e-06 1.699e-06 2.374e-06 0.00% DistributionMapping::Distribute() 1 8.28e-07 1.129e-06 1.357e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.598 3.599 3.599 100.00% Amr::coarseTimeStep() 10 3.36 3.36 3.36 93.36% Amr::timeStep() 10 3.346 3.347 3.349 93.05% Castro::advance() 10 3.331 3.331 3.332 92.60% Castro::subcycle_advance_ctu() 10 3.245 3.255 3.267 90.78% Castro::do_advance_ctu() 10 3.245 3.255 3.267 90.78% Castro::construct_ctu_hydro_source() 10 2.32 2.369 2.429 67.50% Gravity::make_radial_gravity() 21 0.3408 0.3481 0.359 9.97% Gravity::get_new_grav_vector() 11 0.2264 0.2303 0.232 6.45% Amr::init() 1 0.2217 0.222 0.2222 6.17% Castro::construct_old_gravity() 10 0.1946 0.2006 0.209 5.81% Gravity::get_old_grav_vector() 10 0.1938 0.1999 0.2083 5.79% Amr::initialInit() 1 0.2054 0.2056 0.2058 5.72% Castro::construct_new_gravity() 10 0.1997 0.203 0.2039 5.67% FillPatchIterator::Initialize 41 0.1566 0.1761 0.1948 5.41% Castro::initialize_do_advance() 10 0.1602 0.1723 0.1817 5.05% Amr::InitializeInit() 1 0.08703 0.118 0.1744 4.85% Amr::defBaseLevel() 1 0.08703 0.1179 0.1744 4.85% FillPatchSingleLevel 41 0.1127 0.1314 0.1563 4.34% Castro::initData() 1 0.0699 0.09738 0.1503 4.18% Castro::expand_state() 10 0.1089 0.1243 0.1342 3.73% Castro::estTimeStep() 21 0.03967 0.08983 0.1282 3.56% Castro::clean_state() 62 0.1148 0.1173 0.1214 3.37% FabArray::ParallelCopy() 41 0.07654 0.09574 0.1213 3.37% Amr::FinalizeInit() 1 0.03112 0.08767 0.1188 3.30% Castro::computeInitialDt() 2 0.002105 0.05866 0.08974 2.49% FabArray::setVal() 143 0.06111 0.07033 0.08501 2.36% FabArray::ParallelCopy_finish() 41 0.03586 0.05453 0.08394 2.33% Castro::initialize_advance() 10 0.05949 0.07217 0.08303 2.31% amrex::Copy() 193 0.06198 0.07329 0.0817 2.27% Castro::do_new_sources() 10 0.05977 0.06647 0.07707 2.14% Castro::computeTemp() 63 0.0688 0.07052 0.07295 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04946 0.0507 0.05206 1.45% Castro::reset_internal_energy(Fab) 1008 0.04916 0.0504 0.05174 1.44% Castro::do_old_sources() 10 0.04008 0.04506 0.04655 1.29% Castro::normalize_species() 62 0.04085 0.04183 0.04415 1.23% FabArray::ParallelCopy_nowait() 41 0.03726 0.04114 0.04272 1.19% StateDataPhysBCFunct::() 41 0.03366 0.03562 0.03765 1.05% StateData::FillBoundary(geom) 41 0.03353 0.03552 0.03756 1.04% Castro::construct_new_source() 50 0.02873 0.03157 0.03603 1.00% Castro::construct_new_gravity_source() 10 0.02255 0.02539 0.02977 0.83% Gravity::interpolate_monopole_grav() 21 0.02789 0.02837 0.02893 0.80% Castro::post_init() 1 0.02801 0.02846 0.02867 0.80% Amr::writePlotFile() 2 0.02681 0.027 0.02723 0.76% VisMF::Write(FabArray) 2 0.01412 0.01471 0.0173 0.48% Castro::post_timestep() 10 0.01544 0.01578 0.01636 0.45% Castro::Castro() 1 0.01073 0.01298 0.01526 0.42% Castro::apply_source_to_state() 20 0.01255 0.01395 0.01484 0.41% FabArray::Saxpy() 20 0.01251 0.0139 0.01479 0.41% Castro::check_for_nan() 20 0.0114 0.01195 0.01254 0.35% MultiFab::contains_nan() 20 0.01138 0.01192 0.01252 0.35% FabArray::setDomainBndry() 41 0.008946 0.01113 0.01242 0.35% Castro::construct_old_source() 50 0.007484 0.01031 0.01087 0.30% Castro::construct_old_gravity_source() 10 0.007442 0.01025 0.0108 0.30% Castro::initMFs() 1 0.007065 0.008758 0.01048 0.29% Castro::computeNewDt() 9 0.008686 0.008698 0.008708 0.24% AmrLevel::AmrLevel(dm) 1 0.005875 0.007227 0.008551 0.24% StateData::define() 4 0.005863 0.007209 0.00853 0.24% Castro::enforce_min_density() 62 0.005565 0.005992 0.006796 0.19% Castro::swap_state_time_levels() 10 0.003439 0.004583 0.004816 0.13% Castro::finalize_advance() 10 0.002964 0.003552 0.004602 0.13% Castro::buildMetrics() 1 0.001799 0.002247 0.002697 0.07% Castro::finalize_do_advance() 10 0.0006089 0.001685 0.002097 0.06% Castro::post_regrid() 1 0.001529 0.001685 0.001966 0.05% Amr::InitAmr() 1 0.0002963 0.0004299 0.0006916 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.706e-05 0.0003207 0.0004741 0.01% DistributionMapping::LeastUsedCPUs() 1 1.155e-05 0.0003144 0.0004681 0.01% Castro::enforce_consistent_e() 1 8.539e-05 0.0001115 0.0001476 0.00% FabArrayBase::getCPC() 41 6.89e-05 8.024e-05 8.957e-05 0.00% Amr::writeSmallPlotFile() 1 2.493e-05 4.537e-05 6.044e-05 0.00% Castro::enforce_speed_limit() 62 2.164e-05 2.56e-05 3.207e-05 0.00% FabArrayBase::CPC::define() 2 2.003e-05 2.349e-05 2.912e-05 0.00% Gravity::set_mass_offset() 10 9.345e-06 1.184e-05 1.715e-05 0.00% Amr::initSubcycle() 1 9.473e-06 1.285e-05 1.686e-05 0.00% Gravity::swapTimeLevels() 10 7.365e-06 1.245e-05 1.576e-05 0.00% Castro::create_source_corrector() 10 6.887e-06 8.596e-06 9.961e-06 0.00% Castro::FluxRegCrseInit 10 7.754e-06 8.631e-06 9.544e-06 0.00% Castro::retry_advance_ctu() 10 4.956e-06 5.399e-06 6.334e-06 0.00% Castro::FluxRegFineAdd() 10 1.721e-06 2.25e-06 2.563e-06 0.00% DistributionMapping::Distribute() 1 8.28e-07 1.129e-06 1.357e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 36 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-15-g23b157942e41) finalized