MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-19-gf4f6ae9184d2) initialized Starting run at 05:31:09 UTC on 2023-05-19. Successfully read inputs file ... Castro git describe: 23.05-20-g9567effc6 AMReX git describe: 23.05-19-gf4f6ae918 Microphysics git describe: 23.05-9-gcd53da1e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019454432 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.382483217 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.372709817 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334974672 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335766895 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.369894843 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.338336363 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310984379 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312263224 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311384056 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311770592 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010569261 seconds Ending run at 05:31:12 UTC on 2023-05-19. Run time = 3.597884611 Run time without initialization = 3.399037002 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.596 ... 3.597 ... 3.598 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3356 2.3739 2.4167 67.17% Gravity::make_radial_gravity() 21 0.3402 0.3517 0.3613 10.04% Castro::do_advance_ctu() 10 0.0305 0.07418 0.1159 3.22% Castro::initData() 1 0.0651 0.08424 0.1131 3.14% Castro::estTimeStep() 21 0.02306 0.05916 0.08929 2.48% amrex::Copy() 193 0.07135 0.07754 0.08607 2.39% FabArray::setVal() 143 0.06227 0.07435 0.08539 2.37% FabArray::ParallelCopy_finish() 41 0.03783 0.05002 0.05788 1.61% Castro::reset_internal_energy(Fab) 1008 0.0488 0.05054 0.0523 1.45% FabArray::ParallelCopy_nowait() 41 0.04303 0.04432 0.04557 1.27% Castro::normalize_species() 62 0.04092 0.04195 0.04275 1.19% StateData::FillBoundary(geom) 41 0.03353 0.0367 0.04096 1.14% FillPatchIterator::Initialize 41 0.0311 0.03618 0.03849 1.07% Castro::construct_new_gravity_source() 10 0.02288 0.02598 0.02891 0.80% Gravity::interpolate_monopole_grav() 21 0.028 0.02839 0.02878 0.80% Castro::initialize_do_advance() 10 0.01856 0.02012 0.02235 0.62% Castro::computeTemp() 63 0.01918 0.02026 0.02087 0.58% VisMF::Write(FabArray) 2 0.01345 0.01446 0.01869 0.52% Castro::initialize_advance() 10 0.009623 0.01267 0.01579 0.44% FabArray::Saxpy() 20 0.01428 0.01496 0.01539 0.43% Amr::writePlotFile() 2 0.009147 0.01381 0.01505 0.42% MultiFab::contains_nan() 20 0.01174 0.01277 0.0139 0.39% FabArray::setDomainBndry() 41 0.01028 0.01231 0.01323 0.37% Castro::construct_old_gravity_source() 10 0.01063 0.01111 0.01149 0.32% Castro::initMFs() 1 0.00706 0.008169 0.01077 0.30% StateData::define() 4 0.005886 0.006702 0.008624 0.24% Castro::swap_state_time_levels() 10 0.003839 0.005117 0.008112 0.23% main() 1 0.005382 0.006616 0.007174 0.20% Castro::construct_new_source() 50 0.006101 0.006298 0.006438 0.18% Castro::enforce_min_density() 62 0.005811 0.006249 0.006425 0.18% Gravity::get_new_grav_vector() 11 0.00338 0.004416 0.006309 0.18% Gravity::get_old_grav_vector() 10 0.001965 0.002533 0.002837 0.08% Amr::coarseTimeStep() 10 0.001302 0.002 0.002768 0.08% Castro::buildMetrics() 1 0.001679 0.001923 0.002489 0.07% Castro::finalize_do_advance() 10 0.001736 0.00202 0.002309 0.06% Castro::expand_state() 10 0.0007736 0.0009766 0.001169 0.03% Amr::InitAmr() 1 0.000254 0.0003437 0.000649 0.02% Amr::timeStep() 10 0.0001889 0.0002653 0.0005054 0.01% DistributionMapping::LeastUsedCPUs() 1 9.869e-06 0.0003707 0.0004719 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002942 0.0003112 0.0003376 0.01% Castro::clean_state() 62 0.0001398 0.0001616 0.0001728 0.00% Castro::enforce_consistent_e() 1 8.152e-05 0.0001049 0.0001586 0.00% StateDataPhysBCFunct::() 41 9.026e-05 0.0001055 0.0001336 0.00% Castro::finalize_advance() 10 8.607e-05 0.0001058 0.0001236 0.00% FabArray::ParallelCopy() 41 7.545e-05 8.369e-05 9.976e-05 0.00% Castro::Castro() 1 5.054e-05 7.118e-05 9.466e-05 0.00% Amr::FinalizeInit() 1 4.027e-06 1.562e-05 9.093e-05 0.00% Castro::construct_old_source() 50 6.336e-05 7.422e-05 8.934e-05 0.00% FillPatchSingleLevel 41 6.457e-05 7.444e-05 8.569e-05 0.00% Castro::do_old_sources() 10 6.216e-05 7.306e-05 8.257e-05 0.00% Castro::do_new_sources() 10 5.804e-05 6.631e-05 7.464e-05 0.00% FabArrayBase::getCPC() 41 4.153e-05 5.499e-05 6.968e-05 0.00% Castro::apply_source_to_state() 20 4.322e-05 5.171e-05 6.242e-05 0.00% Castro::advance() 10 3.721e-05 4.476e-05 5.889e-05 0.00% Amr::writeSmallPlotFile() 1 2.687e-05 4.296e-05 5.76e-05 0.00% Castro::subcycle_advance_ctu() 10 4.416e-05 4.846e-05 5.566e-05 0.00% Castro::construct_new_gravity() 10 3.706e-05 4.501e-05 5.33e-05 0.00% Castro::construct_old_gravity() 10 3.695e-05 4.384e-05 5.24e-05 0.00% Amr::defBaseLevel() 1 2.49e-05 3.047e-05 3.578e-05 0.00% Castro::enforce_speed_limit() 62 2.399e-05 2.851e-05 3.573e-05 0.00% FabArrayBase::CPC::define() 2 2.051e-05 2.671e-05 3.559e-05 0.00% Castro::check_for_nan() 20 2.248e-05 2.571e-05 3.297e-05 0.00% Amr::initSubcycle() 1 8.983e-06 1.217e-05 2.552e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.247e-05 1.695e-05 2.322e-05 0.00% Gravity::swapTimeLevels() 10 1.329e-05 1.532e-05 1.802e-05 0.00% Castro::post_timestep() 10 1.347e-05 1.509e-05 1.657e-05 0.00% Gravity::set_mass_offset() 10 1.115e-05 1.23e-05 1.396e-05 0.00% Castro::computeNewDt() 9 8.303e-06 1.011e-05 1.171e-05 0.00% Castro::computeInitialDt() 2 3.541e-06 4.974e-06 1.123e-05 0.00% Castro::create_source_corrector() 10 8.255e-06 9.61e-06 1.057e-05 0.00% Castro::FluxRegCrseInit 10 6.782e-06 8.504e-06 1.028e-05 0.00% Amr::initialInit() 1 1.465e-06 2.675e-06 8.683e-06 0.00% Amr::InitializeInit() 1 1.909e-06 2.994e-06 7.439e-06 0.00% Amr::init() 1 1.965e-06 2.987e-06 6.98e-06 0.00% Castro::retry_advance_ctu() 10 4.607e-06 5.609e-06 6.641e-06 0.00% Castro::post_init() 1 3.197e-06 4.225e-06 6.121e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.778e-06 4.394e-06 5.63e-06 0.00% Castro::post_regrid() 1 1.878e-06 3.176e-06 3.95e-06 0.00% Castro::FluxRegFineAdd() 10 1.866e-06 2.309e-06 2.575e-06 0.00% DistributionMapping::Distribute() 1 8.42e-07 9.949e-07 1.333e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.596 3.597 3.598 100.00% Amr::coarseTimeStep() 10 3.381 3.381 3.381 93.98% Amr::timeStep() 10 3.368 3.369 3.37 93.66% Castro::advance() 10 3.352 3.353 3.354 93.21% Castro::subcycle_advance_ctu() 10 3.266 3.272 3.278 91.12% Castro::do_advance_ctu() 10 3.266 3.272 3.278 91.12% Castro::construct_ctu_hydro_source() 10 2.336 2.374 2.417 67.17% Gravity::make_radial_gravity() 21 0.3571 0.3693 0.3797 10.55% Gravity::get_new_grav_vector() 11 0.2539 0.2563 0.2583 7.18% Castro::construct_new_gravity() 10 0.2151 0.2169 0.2188 6.08% Castro::construct_old_gravity() 10 0.1934 0.2013 0.2083 5.79% Gravity::get_old_grav_vector() 10 0.1926 0.2005 0.2076 5.77% Amr::init() 1 0.198 0.1983 0.1984 5.51% FillPatchIterator::Initialize 41 0.1695 0.1799 0.1884 5.24% Castro::initialize_do_advance() 10 0.1662 0.1741 0.182 5.06% Amr::initialInit() 1 0.1779 0.1782 0.1783 4.96% FillPatchSingleLevel 41 0.1194 0.1314 0.1375 3.82% Amr::InitializeInit() 1 0.08666 0.1078 0.1348 3.75% Amr::defBaseLevel() 1 0.08666 0.1078 0.1348 3.75% Castro::expand_state() 10 0.1144 0.1233 0.1324 3.68% Castro::clean_state() 62 0.1156 0.1184 0.1205 3.35% Castro::initData() 1 0.06887 0.08847 0.1172 3.26% FabArray::ParallelCopy() 41 0.08213 0.0945 0.1019 2.83% Amr::FinalizeInit() 1 0.04311 0.07034 0.09121 2.54% Castro::estTimeStep() 21 0.02306 0.05916 0.08929 2.48% amrex::Copy() 193 0.07135 0.07754 0.08607 2.39% FabArray::setVal() 143 0.06227 0.07435 0.08539 2.37% Castro::initialize_advance() 10 0.07093 0.07706 0.08352 2.32% Castro::do_new_sources() 10 0.05939 0.06863 0.07768 2.16% Castro::computeTemp() 63 0.06871 0.07111 0.07337 2.04% FabArray::ParallelCopy_finish() 41 0.03783 0.05002 0.05788 1.61% Castro::reset_internal_energy(MultiFab) 63 0.04909 0.05085 0.0526 1.46% Castro::reset_internal_energy(Fab) 1008 0.0488 0.05054 0.0523 1.45% Castro::computeInitialDt() 2 0.002671 0.02953 0.05078 1.41% Castro::do_old_sources() 10 0.04607 0.04706 0.04813 1.34% FabArray::ParallelCopy_nowait() 41 0.04312 0.0444 0.04564 1.27% Castro::normalize_species() 62 0.04092 0.04195 0.04275 1.19% StateDataPhysBCFunct::() 41 0.03364 0.03681 0.04107 1.14% StateData::FillBoundary(geom) 41 0.03353 0.0367 0.04096 1.14% Castro::post_init() 1 0.03996 0.04059 0.04095 1.14% Castro::construct_new_source() 50 0.02909 0.03227 0.03523 0.98% Amr::writePlotFile() 2 0.03034 0.03085 0.03123 0.87% Castro::construct_new_gravity_source() 10 0.02288 0.02598 0.02891 0.80% Gravity::interpolate_monopole_grav() 21 0.028 0.02839 0.02878 0.80% VisMF::Write(FabArray) 2 0.01345 0.01446 0.01869 0.52% Castro::post_timestep() 10 0.01561 0.01593 0.01631 0.45% Castro::apply_source_to_state() 20 0.01432 0.01501 0.01544 0.43% FabArray::Saxpy() 20 0.01428 0.01496 0.01539 0.43% Castro::Castro() 1 0.011 0.01221 0.0151 0.42% Castro::check_for_nan() 20 0.01176 0.01279 0.01393 0.39% MultiFab::contains_nan() 20 0.01174 0.01277 0.0139 0.39% FabArray::setDomainBndry() 41 0.01028 0.01231 0.01323 0.37% Castro::construct_old_source() 50 0.0107 0.01118 0.01157 0.32% Castro::construct_old_gravity_source() 10 0.01063 0.01111 0.01149 0.32% Castro::initMFs() 1 0.00706 0.008169 0.01077 0.30% AmrLevel::AmrLevel(dm) 1 0.005901 0.006719 0.008643 0.24% Castro::computeNewDt() 9 0.008616 0.008624 0.008634 0.24% StateData::define() 4 0.005886 0.006702 0.008624 0.24% Castro::swap_state_time_levels() 10 0.003839 0.005117 0.008112 0.23% Castro::enforce_min_density() 62 0.005811 0.006249 0.006425 0.18% Castro::finalize_advance() 10 0.002974 0.003481 0.004015 0.11% Castro::post_regrid() 1 0.001519 0.001928 0.002963 0.08% Castro::buildMetrics() 1 0.001811 0.002085 0.002721 0.08% Castro::finalize_do_advance() 10 0.001736 0.00202 0.002309 0.06% Amr::InitAmr() 1 0.0002631 0.0003559 0.0006746 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.511e-05 0.0003761 0.0004785 0.01% DistributionMapping::LeastUsedCPUs() 1 9.869e-06 0.0003707 0.0004719 0.01% Castro::enforce_consistent_e() 1 8.152e-05 0.0001049 0.0001586 0.00% FabArrayBase::getCPC() 41 7.127e-05 8.171e-05 9.271e-05 0.00% Amr::writeSmallPlotFile() 1 2.687e-05 4.296e-05 5.76e-05 0.00% Castro::enforce_speed_limit() 62 2.399e-05 2.851e-05 3.573e-05 0.00% FabArrayBase::CPC::define() 2 2.051e-05 2.671e-05 3.559e-05 0.00% Amr::initSubcycle() 1 8.983e-06 1.217e-05 2.552e-05 0.00% Gravity::swapTimeLevels() 10 1.329e-05 1.532e-05 1.802e-05 0.00% Gravity::set_mass_offset() 10 1.115e-05 1.23e-05 1.396e-05 0.00% Castro::create_source_corrector() 10 8.255e-06 9.61e-06 1.057e-05 0.00% Castro::FluxRegCrseInit 10 6.782e-06 8.504e-06 1.028e-05 0.00% Castro::retry_advance_ctu() 10 4.607e-06 5.609e-06 6.641e-06 0.00% Castro::FluxRegFineAdd() 10 1.866e-06 2.309e-06 2.575e-06 0.00% DistributionMapping::Distribute() 1 8.42e-07 9.949e-07 1.333e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-19-gf4f6ae9184d2) finalized