MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-20-g084165c236ab) initialized Starting run at 05:40:23 UTC on 2023-05-22. Successfully read inputs file ... Castro git describe: 23.05-25-g99ae92958 AMReX git describe: 23.05-20-g084165c23 Microphysics git describe: 23.05-10-g10fb84d2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.078264234 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361450228 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354298328 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329274583 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330154648 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36608814 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340412476 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313953101 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313361132 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31489029 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314894937 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010517644 seconds Ending run at 05:40:26 UTC on 2023-05-22. Run time = 3.654080666 Run time without initialization = 3.356517624 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.653 ... 3.654 ... 3.654 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3221 2.3685 2.4006 65.69% Gravity::make_radial_gravity() 21 0.3242 0.3307 0.3429 9.38% Castro::estTimeStep() 21 0.02324 0.1049 0.167 4.57% Castro::initData() 1 0.03847 0.09153 0.1602 4.38% Castro::do_advance_ctu() 10 0.04523 0.07889 0.1225 3.35% FabArray::ParallelCopy_finish() 41 0.03373 0.05015 0.08133 2.23% FabArray::setVal() 143 0.05788 0.0679 0.08091 2.21% amrex::Copy() 193 0.06145 0.07189 0.07816 2.14% Amr::writePlotFile() 2 0.06872 0.07182 0.0739 2.02% Castro::reset_internal_energy(Fab) 1008 0.04818 0.05013 0.0523 1.43% Castro::normalize_species() 62 0.04058 0.0416 0.04258 1.17% FabArray::ParallelCopy_nowait() 41 0.03755 0.04077 0.04221 1.16% StateData::FillBoundary(geom) 41 0.03314 0.0355 0.03749 1.03% FillPatchIterator::Initialize 41 0.02944 0.03337 0.0361 0.99% Gravity::interpolate_monopole_grav() 21 0.02784 0.02838 0.02903 0.79% Castro::construct_new_gravity_source() 10 0.02257 0.02512 0.02869 0.79% Castro::initialize_do_advance() 10 0.01214 0.01703 0.02157 0.59% Castro::computeTemp() 63 0.01973 0.02018 0.02073 0.57% VisMF::Write(FabArray) 2 0.01335 0.01451 0.01764 0.48% FabArray::Saxpy() 20 0.01252 0.01387 0.01475 0.40% Castro::initialize_advance() 10 0.004056 0.01039 0.01426 0.39% MultiFab::contains_nan() 20 0.01151 0.01202 0.01295 0.35% FabArray::setDomainBndry() 41 0.008991 0.01105 0.01247 0.34% Castro::construct_old_gravity_source() 10 0.007623 0.01042 0.01135 0.31% Castro::initMFs() 1 0.007183 0.008464 0.01054 0.29% StateData::define() 4 0.005851 0.006878 0.008579 0.23% main() 1 0.005369 0.006124 0.006625 0.18% Castro::construct_new_source() 50 0.005798 0.006228 0.006499 0.18% Castro::enforce_min_density() 62 0.005583 0.00586 0.006109 0.17% Gravity::get_new_grav_vector() 11 0.003064 0.003864 0.005938 0.16% Castro::swap_state_time_levels() 10 0.003417 0.004613 0.005504 0.15% Gravity::get_old_grav_vector() 10 0.001689 0.0024 0.00281 0.08% Amr::coarseTimeStep() 10 0.0007805 0.001767 0.00252 0.07% Castro::buildMetrics() 1 0.001683 0.001971 0.002458 0.07% Castro::finalize_do_advance() 10 0.0006995 0.001515 0.001864 0.05% Castro::expand_state() 10 0.0006434 0.0008116 0.0009199 0.03% Amr::InitAmr() 1 0.0002652 0.0003517 0.0004848 0.01% Amr::timeStep() 10 0.0001801 0.0002473 0.0004134 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002851 0.0003042 0.0003216 0.01% DistributionMapping::LeastUsedCPUs() 1 7.095e-06 0.0001796 0.000274 0.01% Castro::clean_state() 62 0.0001313 0.0001485 0.0001658 0.00% Castro::finalize_advance() 10 9.55e-05 0.0001127 0.0001372 0.00% StateDataPhysBCFunct::() 41 8.082e-05 0.0001055 0.0001307 0.00% Castro::enforce_consistent_e() 1 7.67e-05 8.811e-05 9.963e-05 0.00% Amr::FinalizeInit() 1 4.52e-06 1.592e-05 8.495e-05 0.00% FabArray::ParallelCopy() 41 6.582e-05 7.534e-05 8.471e-05 0.00% Castro::construct_old_source() 50 4.26e-05 6.653e-05 8.274e-05 0.00% FillPatchSingleLevel 41 6.273e-05 6.96e-05 7.731e-05 0.00% Castro::do_new_sources() 10 4.631e-05 6.229e-05 7.559e-05 0.00% Castro::Castro() 1 5.72e-05 6.488e-05 7.454e-05 0.00% FabArrayBase::getCPC() 41 3.676e-05 5.914e-05 7.263e-05 0.00% Amr::writeSmallPlotFile() 1 2.584e-05 6.067e-05 7.178e-05 0.00% Castro::do_old_sources() 10 4.739e-05 6.025e-05 6.653e-05 0.00% Castro::construct_new_gravity() 10 3.589e-05 4.349e-05 6.053e-05 0.00% Castro::subcycle_advance_ctu() 10 3.695e-05 4.571e-05 5.994e-05 0.00% Castro::apply_source_to_state() 20 3.389e-05 4.614e-05 5.498e-05 0.00% Castro::advance() 10 3.197e-05 4.207e-05 5.462e-05 0.00% Amr::defBaseLevel() 1 3.119e-05 3.872e-05 4.78e-05 0.00% Castro::construct_old_gravity() 10 3.289e-05 3.854e-05 4.57e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.621e-05 2.198e-05 3.766e-05 0.00% Castro::enforce_speed_limit() 62 2.348e-05 2.78e-05 3.337e-05 0.00% Castro::check_for_nan() 20 2.063e-05 2.359e-05 2.742e-05 0.00% FabArrayBase::CPC::define() 2 2.192e-05 2.339e-05 2.508e-05 0.00% Castro::post_timestep() 10 1.34e-05 1.532e-05 1.851e-05 0.00% Amr::initSubcycle() 1 8.94e-06 1.126e-05 1.608e-05 0.00% Gravity::swapTimeLevels() 10 7.736e-06 1.228e-05 1.561e-05 0.00% Gravity::set_mass_offset() 10 9.529e-06 1.167e-05 1.357e-05 0.00% Castro::FluxRegCrseInit 10 7.248e-06 9.497e-06 1.113e-05 0.00% Castro::computeNewDt() 9 8.122e-06 1.011e-05 1.099e-05 0.00% Castro::create_source_corrector() 10 6.887e-06 8.284e-06 9.762e-06 0.00% Castro::post_regrid() 1 1.823e-06 3.519e-06 7.268e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.963e-06 4.951e-06 6.602e-06 0.00% Castro::retry_advance_ctu() 10 4.915e-06 5.588e-06 6.437e-06 0.00% Amr::InitializeInit() 1 2.094e-06 2.66e-06 5.373e-06 0.00% Castro::computeInitialDt() 2 3.371e-06 4.31e-06 4.998e-06 0.00% Castro::post_init() 1 2.789e-06 3.475e-06 4.106e-06 0.00% Castro::FluxRegFineAdd() 10 1.968e-06 2.344e-06 2.985e-06 0.00% Amr::initialInit() 1 1.232e-06 1.688e-06 2.654e-06 0.00% Amr::init() 1 2.061e-06 2.312e-06 2.611e-06 0.00% DistributionMapping::Distribute() 1 8.82e-07 1.141e-06 1.356e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.653 3.654 3.654 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 91.39% Amr::timeStep() 10 3.327 3.328 3.329 91.10% Castro::advance() 10 3.311 3.312 3.313 90.66% Castro::subcycle_advance_ctu() 10 3.23 3.237 3.25 88.94% Castro::do_advance_ctu() 10 3.23 3.237 3.25 88.94% Castro::construct_ctu_hydro_source() 10 2.322 2.368 2.401 65.69% Gravity::make_radial_gravity() 21 0.3411 0.3474 0.3562 9.75% Amr::init() 1 0.2969 0.297 0.2971 8.13% Gravity::get_new_grav_vector() 11 0.2272 0.2293 0.2309 6.32% Amr::initialInit() 1 0.2185 0.2187 0.2192 6.00% Castro::construct_old_gravity() 10 0.1966 0.2002 0.2071 5.67% Gravity::get_old_grav_vector() 10 0.1958 0.1995 0.2065 5.65% Castro::construct_new_gravity() 10 0.2005 0.202 0.203 5.55% FillPatchIterator::Initialize 41 0.1575 0.1712 0.1924 5.27% Amr::InitializeInit() 1 0.05908 0.1146 0.1874 5.13% Amr::defBaseLevel() 1 0.05908 0.1146 0.1874 5.13% Castro::initialize_do_advance() 10 0.1546 0.1661 0.1722 4.71% Castro::estTimeStep() 21 0.02324 0.1049 0.167 4.57% Castro::initData() 1 0.04208 0.09534 0.164 4.49% Amr::FinalizeInit() 1 0.03137 0.1041 0.1596 4.37% FillPatchSingleLevel 41 0.1112 0.1268 0.154 4.21% Castro::computeInitialDt() 2 0.002164 0.0751 0.1308 3.58% Castro::expand_state() 10 0.1074 0.1191 0.1307 3.58% Castro::clean_state() 62 0.1145 0.1173 0.121 3.31% FabArray::ParallelCopy() 41 0.07521 0.09109 0.119 3.26% Amr::writePlotFile() 2 0.08851 0.08889 0.08915 2.44% FabArray::ParallelCopy_finish() 41 0.03373 0.05015 0.08133 2.23% FabArray::setVal() 143 0.05788 0.0679 0.08091 2.21% Castro::initialize_advance() 10 0.05743 0.07086 0.07874 2.15% amrex::Copy() 193 0.06145 0.07189 0.07816 2.14% Castro::do_new_sources() 10 0.05947 0.06573 0.07613 2.08% Castro::computeTemp() 63 0.06834 0.07062 0.07336 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04848 0.05043 0.05263 1.44% Castro::reset_internal_energy(Fab) 1008 0.04818 0.05013 0.0523 1.43% Castro::do_old_sources() 10 0.04054 0.04541 0.04663 1.28% Castro::normalize_species() 62 0.04058 0.0416 0.04258 1.17% FabArray::ParallelCopy_nowait() 41 0.03765 0.04086 0.04229 1.16% StateDataPhysBCFunct::() 41 0.03327 0.0356 0.03759 1.03% StateData::FillBoundary(geom) 41 0.03314 0.0355 0.03749 1.03% Castro::construct_new_source() 50 0.02868 0.03135 0.03516 0.96% Gravity::interpolate_monopole_grav() 21 0.02784 0.02838 0.02903 0.79% Castro::post_init() 1 0.02791 0.02849 0.02882 0.79% Castro::construct_new_gravity_source() 10 0.02257 0.02512 0.02869 0.79% VisMF::Write(FabArray) 2 0.01335 0.01451 0.01764 0.48% Castro::post_timestep() 10 0.0155 0.01583 0.01618 0.44% Castro::Castro() 1 0.01061 0.01218 0.01483 0.41% Castro::apply_source_to_state() 20 0.01256 0.01392 0.0148 0.41% FabArray::Saxpy() 20 0.01252 0.01387 0.01475 0.40% Castro::check_for_nan() 20 0.01153 0.01204 0.01297 0.36% MultiFab::contains_nan() 20 0.01151 0.01202 0.01295 0.35% FabArray::setDomainBndry() 41 0.008991 0.01105 0.01247 0.34% Castro::construct_old_source() 50 0.007666 0.01048 0.01143 0.31% Castro::construct_old_gravity_source() 10 0.007623 0.01042 0.01135 0.31% Castro::initMFs() 1 0.007183 0.008464 0.01054 0.29% AmrLevel::AmrLevel(dm) 1 0.005869 0.0069 0.008602 0.24% StateData::define() 4 0.005851 0.006878 0.008579 0.23% Castro::computeNewDt() 9 0.008423 0.008433 0.008439 0.23% Castro::enforce_min_density() 62 0.005583 0.00586 0.006109 0.17% Castro::swap_state_time_levels() 10 0.003417 0.004613 0.005504 0.15% Castro::finalize_advance() 10 0.00308 0.003625 0.004121 0.11% Castro::buildMetrics() 1 0.001792 0.00212 0.002672 0.07% Castro::post_regrid() 1 0.0015 0.001693 0.002014 0.06% Castro::finalize_do_advance() 10 0.0006995 0.001515 0.001864 0.05% Amr::InitAmr() 1 0.0002749 0.0003629 0.0004993 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.237e-05 0.0001857 0.0002818 0.01% DistributionMapping::LeastUsedCPUs() 1 7.095e-06 0.0001796 0.000274 0.01% Castro::enforce_consistent_e() 1 7.67e-05 8.811e-05 9.963e-05 0.00% FabArrayBase::getCPC() 41 6.008e-05 8.253e-05 9.676e-05 0.00% Amr::writeSmallPlotFile() 1 2.584e-05 6.067e-05 7.178e-05 0.00% Castro::enforce_speed_limit() 62 2.348e-05 2.78e-05 3.337e-05 0.00% FabArrayBase::CPC::define() 2 2.192e-05 2.339e-05 2.508e-05 0.00% Amr::initSubcycle() 1 8.94e-06 1.126e-05 1.608e-05 0.00% Gravity::swapTimeLevels() 10 7.736e-06 1.228e-05 1.561e-05 0.00% Gravity::set_mass_offset() 10 9.529e-06 1.167e-05 1.357e-05 0.00% Castro::FluxRegCrseInit 10 7.248e-06 9.497e-06 1.113e-05 0.00% Castro::create_source_corrector() 10 6.887e-06 8.284e-06 9.762e-06 0.00% Castro::retry_advance_ctu() 10 4.915e-06 5.588e-06 6.437e-06 0.00% Castro::FluxRegFineAdd() 10 1.968e-06 2.344e-06 2.985e-06 0.00% DistributionMapping::Distribute() 1 8.82e-07 1.141e-06 1.356e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-20-g084165c236ab) finalized