MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-26-g4167cbe534a0) initialized Starting run at 05:40:49 UTC on 2023-05-23. Successfully read inputs file ... Castro git describe: 23.05-25-g99ae92958 AMReX git describe: 23.05-26-g4167cbe53 Microphysics git describe: 23.05-12-g1f8fd85f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016892641 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362590361 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353423708 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341521458 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.372918243 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368104497 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345100381 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311471248 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312540382 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312130848 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311378086 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010691501 seconds Ending run at 05:40:53 UTC on 2023-05-23. Run time = 3.591489258 Run time without initialization = 3.40955182 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.591 ... 3.591 ... 3.592 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3016 2.3657 2.4269 67.57% Gravity::make_radial_gravity() 21 0.3213 0.3371 0.3507 9.76% Castro::do_advance_ctu() 10 0.05014 0.1148 0.182 5.07% Castro::initData() 1 0.0387 0.07707 0.1135 3.16% Castro::estTimeStep() 21 0.02392 0.0684 0.1131 3.15% FabArray::setVal() 143 0.06368 0.07262 0.08462 2.36% amrex::Copy() 193 0.06258 0.07317 0.08395 2.34% FabArray::ParallelCopy_finish() 41 0.03737 0.05262 0.07903 2.20% Castro::reset_internal_energy(Fab) 1008 0.04803 0.04971 0.05176 1.44% FabArray::ParallelCopy_nowait() 41 0.03652 0.04184 0.04374 1.22% Castro::normalize_species() 62 0.04073 0.04146 0.04245 1.18% StateData::FillBoundary(geom) 41 0.03222 0.03551 0.04019 1.12% FillPatchIterator::Initialize 41 0.02898 0.03451 0.03657 1.02% Gravity::interpolate_monopole_grav() 21 0.02814 0.02845 0.0291 0.81% Castro::construct_new_gravity_source() 10 0.02253 0.02491 0.02852 0.79% Castro::initialize_do_advance() 10 0.01169 0.01816 0.02209 0.62% Castro::computeTemp() 63 0.01917 0.01995 0.0212 0.59% VisMF::Write(FabArray) 2 0.01362 0.01426 0.01697 0.47% Castro::initialize_advance() 10 0.009564 0.012 0.01506 0.42% FabArray::Saxpy() 20 0.01189 0.01353 0.01457 0.41% MultiFab::contains_nan() 20 0.0111 0.01197 0.01298 0.36% FabArray::setDomainBndry() 41 0.008763 0.01166 0.01291 0.36% Castro::construct_old_gravity_source() 10 0.00732 0.0101 0.01102 0.31% Amr::writePlotFile() 2 0.008107 0.01004 0.0107 0.30% Castro::initMFs() 1 0.006935 0.006974 0.007003 0.19% main() 1 0.005873 0.006504 0.006836 0.19% Castro::enforce_min_density() 62 0.005709 0.006011 0.006448 0.18% Castro::construct_new_source() 50 0.005713 0.006132 0.006323 0.18% Gravity::get_new_grav_vector() 11 0.002902 0.004246 0.006305 0.18% StateData::define() 4 0.005783 0.005835 0.005903 0.16% Castro::swap_state_time_levels() 10 0.003363 0.004386 0.004735 0.13% Amr::coarseTimeStep() 10 0.001314 0.002296 0.00321 0.09% Gravity::get_old_grav_vector() 10 0.001636 0.002351 0.002873 0.08% Castro::finalize_do_advance() 10 0.0006758 0.001516 0.001845 0.05% Castro::buildMetrics() 1 0.001643 0.001655 0.001674 0.05% Castro::expand_state() 10 0.0006425 0.0009865 0.001177 0.03% Amr::InitAmr() 1 0.0002573 0.0003277 0.0006344 0.02% DistributionMapping::LeastUsedCPUs() 1 8.105e-06 0.0003991 0.0004768 0.01% Amr::timeStep() 10 0.0001824 0.0002358 0.0004069 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002767 0.0002957 0.0003267 0.01% Castro::clean_state() 62 0.0001298 0.0001487 0.0001537 0.00% StateDataPhysBCFunct::() 41 7.674e-05 9.979e-05 0.0001238 0.00% Castro::finalize_advance() 10 8.84e-05 0.000107 0.0001202 0.00% Castro::Castro() 1 6.307e-05 8.064e-05 0.0001054 0.00% Castro::enforce_consistent_e() 1 7.704e-05 8.737e-05 9.906e-05 0.00% Amr::FinalizeInit() 1 4.236e-06 1.646e-05 9.184e-05 0.00% FabArray::ParallelCopy() 41 5.958e-05 7.384e-05 8.109e-05 0.00% FillPatchSingleLevel 41 6.096e-05 7.289e-05 7.775e-05 0.00% Castro::construct_old_source() 50 4.349e-05 6.311e-05 7.659e-05 0.00% Castro::do_new_sources() 10 5.334e-05 6.366e-05 7.47e-05 0.00% Amr::writeSmallPlotFile() 1 2.6e-05 5.778e-05 7.32e-05 0.00% Castro::do_old_sources() 10 4.927e-05 6.093e-05 7.132e-05 0.00% FabArrayBase::getCPC() 41 3.826e-05 5.698e-05 6.791e-05 0.00% Amr::defBaseLevel() 1 2.534e-05 4.393e-05 5.928e-05 0.00% Castro::subcycle_advance_ctu() 10 3.677e-05 4.415e-05 5.272e-05 0.00% Castro::apply_source_to_state() 20 3.172e-05 4.342e-05 4.795e-05 0.00% Castro::advance() 10 3.218e-05 4.023e-05 4.683e-05 0.00% Castro::construct_new_gravity() 10 3.427e-05 3.793e-05 4.277e-05 0.00% Castro::construct_old_gravity() 10 2.818e-05 3.58e-05 4.096e-05 0.00% FabArrayBase::CPC::define() 2 1.903e-05 2.558e-05 3.929e-05 0.00% Castro::enforce_speed_limit() 62 2.539e-05 2.945e-05 3.892e-05 0.00% Amr::initSubcycle() 1 9.274e-06 1.224e-05 3.165e-05 0.00% Castro::check_for_nan() 20 2.103e-05 2.348e-05 2.535e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.301e-05 1.655e-05 2.079e-05 0.00% Castro::post_timestep() 10 1.32e-05 1.481e-05 1.621e-05 0.00% Gravity::swapTimeLevels() 10 9.815e-06 1.199e-05 1.495e-05 0.00% Gravity::set_mass_offset() 10 8.823e-06 1.055e-05 1.276e-05 0.00% Castro::computeNewDt() 9 8.011e-06 1.046e-05 1.223e-05 0.00% Castro::create_source_corrector() 10 7.558e-06 8.952e-06 1.07e-05 0.00% Castro::FluxRegCrseInit 10 7.769e-06 8.701e-06 1.035e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.826e-06 5.736e-06 7.105e-06 0.00% Castro::retry_advance_ctu() 10 4.783e-06 5.308e-06 5.66e-06 0.00% Castro::computeInitialDt() 2 3.659e-06 4.413e-06 5.311e-06 0.00% Castro::post_init() 1 3.333e-06 4.001e-06 5.041e-06 0.00% Amr::InitializeInit() 1 1.877e-06 2.894e-06 4.874e-06 0.00% Castro::post_regrid() 1 1.96e-06 3.149e-06 4.507e-06 0.00% Amr::init() 1 1.868e-06 2.162e-06 2.579e-06 0.00% Castro::FluxRegFineAdd() 10 1.998e-06 2.189e-06 2.492e-06 0.00% Amr::initialInit() 1 1.163e-06 1.671e-06 1.977e-06 0.00% DistributionMapping::Distribute() 1 8.67e-07 1.07e-06 1.742e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.591 3.591 3.592 100.00% Amr::coarseTimeStep() 10 3.392 3.392 3.392 94.45% Amr::timeStep() 10 3.379 3.38 3.381 94.14% Castro::advance() 10 3.363 3.364 3.364 93.67% Castro::subcycle_advance_ctu() 10 3.279 3.286 3.291 91.62% Castro::do_advance_ctu() 10 3.279 3.286 3.291 91.62% Castro::construct_ctu_hydro_source() 10 2.302 2.366 2.427 67.57% Gravity::make_radial_gravity() 21 0.3384 0.3543 0.3696 10.29% Gravity::get_new_grav_vector() 11 0.2271 0.2312 0.2333 6.49% Castro::construct_old_gravity() 10 0.1967 0.2085 0.2207 6.15% Gravity::get_old_grav_vector() 10 0.196 0.2078 0.2201 6.13% Castro::construct_new_gravity() 10 0.2036 0.2056 0.2067 5.75% FillPatchIterator::Initialize 41 0.1611 0.1765 0.1891 5.26% Amr::init() 1 0.1811 0.1815 0.1815 5.05% Castro::initialize_do_advance() 10 0.1581 0.1689 0.1777 4.95% Amr::initialInit() 1 0.1643 0.1653 0.1658 4.62% FillPatchSingleLevel 41 0.118 0.1303 0.1514 4.21% Amr::InitializeInit() 1 0.06102 0.09939 0.136 3.79% Amr::defBaseLevel() 1 0.06102 0.09938 0.136 3.79% Castro::expand_state() 10 0.1079 0.1204 0.13 3.62% Castro::clean_state() 62 0.1144 0.1167 0.1209 3.37% Castro::initData() 1 0.04277 0.08121 0.1178 3.28% FabArray::ParallelCopy() 41 0.0801 0.09462 0.1157 3.22% Castro::estTimeStep() 21 0.02392 0.0684 0.1131 3.15% Amr::FinalizeInit() 1 0.02901 0.06587 0.1047 2.91% FabArray::setVal() 143 0.06368 0.07262 0.08462 2.36% amrex::Copy() 193 0.06258 0.07317 0.08395 2.34% Castro::initialize_advance() 10 0.06956 0.07398 0.08143 2.27% FabArray::ParallelCopy_finish() 41 0.03737 0.05262 0.07903 2.20% Castro::computeInitialDt() 2 0.002026 0.03856 0.07701 2.14% Castro::do_new_sources() 10 0.05961 0.06609 0.07578 2.11% Castro::computeTemp() 63 0.06782 0.06996 0.07313 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04831 0.05001 0.05206 1.45% Castro::reset_internal_energy(Fab) 1008 0.04803 0.04971 0.05176 1.44% Castro::do_old_sources() 10 0.0392 0.04451 0.04592 1.28% FabArray::ParallelCopy_nowait() 41 0.03663 0.04192 0.04381 1.22% Castro::normalize_species() 62 0.04073 0.04146 0.04245 1.18% StateDataPhysBCFunct::() 41 0.0323 0.03561 0.04029 1.12% StateData::FillBoundary(geom) 41 0.03222 0.03551 0.04019 1.12% Castro::construct_new_source() 50 0.02869 0.03104 0.03463 0.96% Gravity::interpolate_monopole_grav() 21 0.02814 0.02845 0.0291 0.81% Castro::construct_new_gravity_source() 10 0.02253 0.02491 0.02852 0.79% Amr::writePlotFile() 2 0.02643 0.02701 0.02788 0.78% Castro::post_init() 1 0.02576 0.02676 0.02733 0.76% VisMF::Write(FabArray) 2 0.01362 0.01426 0.01697 0.47% Castro::post_timestep() 10 0.01564 0.01602 0.01648 0.46% Castro::apply_source_to_state() 20 0.01193 0.01357 0.01462 0.41% FabArray::Saxpy() 20 0.01189 0.01353 0.01457 0.41% Castro::check_for_nan() 20 0.01112 0.01199 0.01301 0.36% MultiFab::contains_nan() 20 0.0111 0.01197 0.01298 0.36% FabArray::setDomainBndry() 41 0.008763 0.01166 0.01291 0.36% Castro::Castro() 1 0.01183 0.01187 0.01191 0.33% Castro::construct_old_source() 50 0.007363 0.01016 0.01109 0.31% Castro::construct_old_gravity_source() 10 0.00732 0.0101 0.01102 0.31% Castro::computeNewDt() 9 0.008681 0.00869 0.008699 0.24% Castro::initMFs() 1 0.006935 0.006974 0.007003 0.19% Castro::enforce_min_density() 62 0.005709 0.006011 0.006448 0.18% AmrLevel::AmrLevel(dm) 1 0.005804 0.005851 0.005923 0.16% StateData::define() 4 0.005783 0.005835 0.005903 0.16% Castro::swap_state_time_levels() 10 0.003363 0.004386 0.004735 0.13% Castro::finalize_advance() 10 0.002959 0.003439 0.003932 0.11% Castro::finalize_do_advance() 10 0.0006758 0.001516 0.001845 0.05% Castro::buildMetrics() 1 0.001783 0.001796 0.001812 0.05% Castro::post_regrid() 1 0.001523 0.001602 0.001662 0.05% Amr::InitAmr() 1 0.0002665 0.0003399 0.000666 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.596e-05 0.0004059 0.0004841 0.01% DistributionMapping::LeastUsedCPUs() 1 8.105e-06 0.0003991 0.0004768 0.01% FabArrayBase::getCPC() 41 6.33e-05 8.255e-05 0.0001072 0.00% Castro::enforce_consistent_e() 1 7.704e-05 8.737e-05 9.906e-05 0.00% Amr::writeSmallPlotFile() 1 2.6e-05 5.778e-05 7.32e-05 0.00% FabArrayBase::CPC::define() 2 1.903e-05 2.558e-05 3.929e-05 0.00% Castro::enforce_speed_limit() 62 2.539e-05 2.945e-05 3.892e-05 0.00% Amr::initSubcycle() 1 9.274e-06 1.224e-05 3.165e-05 0.00% Gravity::swapTimeLevels() 10 9.815e-06 1.199e-05 1.495e-05 0.00% Gravity::set_mass_offset() 10 8.823e-06 1.055e-05 1.276e-05 0.00% Castro::create_source_corrector() 10 7.558e-06 8.952e-06 1.07e-05 0.00% Castro::FluxRegCrseInit 10 7.769e-06 8.701e-06 1.035e-05 0.00% Castro::retry_advance_ctu() 10 4.783e-06 5.308e-06 5.66e-06 0.00% Castro::FluxRegFineAdd() 10 1.998e-06 2.189e-06 2.492e-06 0.00% DistributionMapping::Distribute() 1 8.67e-07 1.07e-06 1.742e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-26-g4167cbe534a0) finalized