MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-29-g76d6d344e12d) initialized Starting run at 05:38:59 UTC on 2023-05-25. Successfully read inputs file ... Castro git describe: 23.05-25-g99ae92958 AMReX git describe: 23.05-29-g76d6d344e Microphysics git describe: 23.05-12-g1f8fd85f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016859785 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363031526 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350160853 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33709807 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336526778 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.363536075 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345564145 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311929492 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31167168 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311431814 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314544952 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.04140187 seconds Ending run at 05:39:03 UTC on 2023-05-25. Run time = 3.601137858 Run time without initialization = 3.394942821 Average number of zones advanced per microsecond: 0.772 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.599 ... 3.601 ... 3.601 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2764 2.3645 2.4084 66.88% Gravity::make_radial_gravity() 21 0.3205 0.3388 0.3571 9.92% Castro::do_advance_ctu() 10 0.01363 0.05967 0.1535 4.26% Castro::estTimeStep() 21 0.04202 0.08578 0.1345 3.73% Castro::initData() 1 0.04029 0.08326 0.1338 3.71% FabArray::setVal() 143 0.06143 0.07216 0.08743 2.43% FabArray::ParallelCopy_finish() 41 0.03405 0.05546 0.08688 2.41% amrex::Copy() 193 0.06163 0.07287 0.08423 2.34% Castro::reset_internal_energy(Fab) 1008 0.0486 0.0502 0.05372 1.49% FabArray::ParallelCopy_nowait() 41 0.03714 0.0423 0.04419 1.23% Castro::normalize_species() 62 0.04109 0.04234 0.04384 1.22% Amr::writePlotFile() 2 0.03843 0.04162 0.04234 1.18% StateData::FillBoundary(geom) 41 0.0335 0.0371 0.03981 1.11% FillPatchIterator::Initialize 41 0.03007 0.03516 0.03743 1.04% Castro::construct_new_gravity_source() 10 0.0227 0.02574 0.02987 0.83% Gravity::interpolate_monopole_grav() 21 0.02779 0.0282 0.02852 0.79% Castro::initialize_do_advance() 10 0.01265 0.0189 0.02274 0.63% Castro::computeTemp() 63 0.01869 0.0198 0.02106 0.58% VisMF::Write(FabArray) 2 0.01373 0.01454 0.0181 0.50% Castro::initialize_advance() 10 0.004127 0.01046 0.015 0.42% FabArray::Saxpy() 20 0.01212 0.01389 0.01471 0.41% MultiFab::contains_nan() 20 0.01106 0.01201 0.01362 0.38% FabArray::setDomainBndry() 41 0.00836 0.0116 0.01266 0.35% Castro::construct_old_gravity_source() 10 0.007463 0.01034 0.01106 0.31% Castro::initMFs() 1 0.007089 0.007734 0.008402 0.23% main() 1 0.005554 0.006808 0.00729 0.20% StateData::define() 4 0.005883 0.006306 0.006726 0.19% Castro::enforce_min_density() 62 0.005736 0.006087 0.006694 0.19% Castro::construct_new_source() 50 0.005585 0.006171 0.006414 0.18% Gravity::get_new_grav_vector() 11 0.00315 0.004218 0.005877 0.16% Castro::swap_state_time_levels() 10 0.002753 0.004656 0.00544 0.15% Amr::coarseTimeStep() 10 0.001327 0.002921 0.00407 0.11% Gravity::get_old_grav_vector() 10 0.00188 0.002426 0.002807 0.08% Castro::finalize_do_advance() 10 0.0006822 0.001643 0.00205 0.06% Castro::buildMetrics() 1 0.001661 0.001798 0.00195 0.05% Castro::expand_state() 10 0.0007971 0.0008944 0.001067 0.03% Amr::timeStep() 10 0.0001719 0.000232 0.0004012 0.01% Amr::InitAmr() 1 0.0002742 0.0003028 0.0004008 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002823 0.000294 0.0003285 0.01% Castro::clean_state() 62 0.0001459 0.0001919 0.0002372 0.01% StateDataPhysBCFunct::() 41 8.324e-05 9.988e-05 0.0001267 0.00% Castro::finalize_advance() 10 8.427e-05 0.0001041 0.000125 0.00% DistributionMapping::LeastUsedCPUs() 1 6.27e-06 9.521e-05 0.0001208 0.00% Castro::enforce_consistent_e() 1 7.821e-05 8.708e-05 9.515e-05 0.00% Castro::construct_old_source() 50 5.114e-05 6.833e-05 8.457e-05 0.00% FabArray::ParallelCopy() 41 6.701e-05 7.29e-05 8.401e-05 0.00% FillPatchSingleLevel 41 6.498e-05 7.309e-05 8.208e-05 0.00% Amr::FinalizeInit() 1 4.196e-06 1.444e-05 8.168e-05 0.00% FabArrayBase::getCPC() 41 4.346e-05 5.845e-05 7.894e-05 0.00% Castro::Castro() 1 5.871e-05 6.625e-05 7.843e-05 0.00% Castro::do_new_sources() 10 5.286e-05 6.696e-05 7.705e-05 0.00% Castro::do_old_sources() 10 4.995e-05 5.927e-05 6.922e-05 0.00% Amr::writeSmallPlotFile() 1 2.492e-05 4.716e-05 6.345e-05 0.00% Castro::advance() 10 3.664e-05 4.718e-05 5.927e-05 0.00% Amr::defBaseLevel() 1 2.652e-05 3.848e-05 5.449e-05 0.00% Castro::apply_source_to_state() 20 3.461e-05 4.549e-05 5.234e-05 0.00% Castro::subcycle_advance_ctu() 10 3.755e-05 4.483e-05 4.733e-05 0.00% Castro::construct_new_gravity() 10 3.503e-05 3.893e-05 4.59e-05 0.00% Castro::construct_old_gravity() 10 3.302e-05 3.88e-05 4.38e-05 0.00% Castro::enforce_speed_limit() 62 2.191e-05 2.717e-05 3.45e-05 0.00% FabArrayBase::CPC::define() 2 2.048e-05 2.322e-05 2.799e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.324e-05 1.662e-05 2.271e-05 0.00% Castro::check_for_nan() 20 1.897e-05 2.071e-05 2.148e-05 0.00% Castro::post_timestep() 10 1.189e-05 1.446e-05 1.714e-05 0.00% Gravity::swapTimeLevels() 10 9.026e-06 1.292e-05 1.708e-05 0.00% Castro::computeNewDt() 9 8.005e-06 1.043e-05 1.375e-05 0.00% Gravity::set_mass_offset() 10 8.856e-06 1.064e-05 1.187e-05 0.00% Castro::create_source_corrector() 10 7.777e-06 8.877e-06 1.092e-05 0.00% Amr::initSubcycle() 1 9.175e-06 1.007e-05 1.071e-05 0.00% Castro::post_init() 1 2.555e-06 4.057e-06 1.038e-05 0.00% Castro::FluxRegCrseInit 10 6.964e-06 8.257e-06 9.252e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.634e-06 4.631e-06 6.911e-06 0.00% Castro::post_regrid() 1 2.417e-06 3.859e-06 6.394e-06 0.00% Castro::retry_advance_ctu() 10 4.188e-06 5.584e-06 6.113e-06 0.00% Castro::computeInitialDt() 2 3.53e-06 4.286e-06 6.072e-06 0.00% Amr::InitializeInit() 1 2.201e-06 2.705e-06 4.69e-06 0.00% Castro::FluxRegFineAdd() 10 2.015e-06 2.341e-06 2.927e-06 0.00% Amr::init() 1 1.694e-06 2.09e-06 2.392e-06 0.00% Amr::initialInit() 1 1.252e-06 1.636e-06 2.246e-06 0.00% DistributionMapping::Distribute() 1 1.027e-06 1.079e-06 1.258e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.599 3.601 3.601 100.00% Amr::coarseTimeStep() 10 3.346 3.346 3.346 92.92% Amr::timeStep() 10 3.332 3.333 3.335 92.61% Castro::advance() 10 3.316 3.317 3.319 92.15% Castro::subcycle_advance_ctu() 10 3.228 3.24 3.249 90.23% Castro::do_advance_ctu() 10 3.228 3.24 3.249 90.23% Castro::construct_ctu_hydro_source() 10 2.276 2.365 2.408 66.88% Gravity::make_radial_gravity() 21 0.3357 0.3552 0.371 10.30% Gravity::get_new_grav_vector() 11 0.2303 0.235 0.2376 6.60% Castro::construct_old_gravity() 10 0.1934 0.2047 0.2165 6.01% Gravity::get_old_grav_vector() 10 0.1926 0.204 0.2158 5.99% Castro::construct_new_gravity() 10 0.2033 0.2076 0.2095 5.82% Amr::init() 1 0.2056 0.2057 0.2058 5.71% FillPatchIterator::Initialize 41 0.1625 0.1819 0.1963 5.45% Amr::initialInit() 1 0.1882 0.1885 0.1888 5.24% Castro::initialize_do_advance() 10 0.1595 0.1756 0.1867 5.18% FillPatchSingleLevel 41 0.117 0.1352 0.1578 4.38% Amr::InitializeInit() 1 0.06092 0.1054 0.1572 4.36% Amr::defBaseLevel() 1 0.06091 0.1054 0.1572 4.36% Castro::expand_state() 10 0.1088 0.1263 0.1387 3.85% Castro::initData() 1 0.04419 0.08728 0.1379 3.83% Castro::estTimeStep() 21 0.04202 0.08578 0.1345 3.73% Amr::FinalizeInit() 1 0.03167 0.0831 0.1277 3.55% Castro::clean_state() 62 0.1151 0.1179 0.1244 3.45% FabArray::ParallelCopy() 41 0.07737 0.09791 0.1242 3.45% Castro::computeInitialDt() 2 0.002321 0.05413 0.09851 2.74% FabArray::setVal() 143 0.06143 0.07216 0.08743 2.43% FabArray::ParallelCopy_finish() 41 0.03405 0.05546 0.08688 2.41% Castro::initialize_advance() 10 0.06327 0.07376 0.08555 2.38% amrex::Copy() 193 0.06163 0.07287 0.08423 2.34% Castro::do_new_sources() 10 0.05947 0.0671 0.07848 2.18% Castro::computeTemp() 63 0.06835 0.07029 0.07508 2.08% Amr::writePlotFile() 2 0.05838 0.05875 0.05909 1.64% Castro::reset_internal_energy(MultiFab) 63 0.04892 0.0505 0.05402 1.50% Castro::reset_internal_energy(Fab) 1008 0.0486 0.0502 0.05372 1.49% Castro::do_old_sources() 10 0.03951 0.0449 0.04602 1.28% FabArray::ParallelCopy_nowait() 41 0.03722 0.04238 0.04426 1.23% Castro::normalize_species() 62 0.04109 0.04234 0.04384 1.22% StateDataPhysBCFunct::() 41 0.03359 0.0372 0.0399 1.11% StateData::FillBoundary(geom) 41 0.0335 0.0371 0.03981 1.11% Castro::construct_new_source() 50 0.02877 0.03192 0.03628 1.01% Castro::construct_new_gravity_source() 10 0.0227 0.02574 0.02987 0.83% Castro::post_init() 1 0.02828 0.02847 0.02869 0.80% Gravity::interpolate_monopole_grav() 21 0.02779 0.0282 0.02852 0.79% VisMF::Write(FabArray) 2 0.01373 0.01454 0.0181 0.50% Castro::post_timestep() 10 0.01545 0.01581 0.01628 0.45% Castro::apply_source_to_state() 20 0.01217 0.01393 0.01476 0.41% FabArray::Saxpy() 20 0.01212 0.01389 0.01471 0.41% Castro::check_for_nan() 20 0.01108 0.01203 0.01364 0.38% MultiFab::contains_nan() 20 0.01106 0.01201 0.01362 0.38% FabArray::setDomainBndry() 41 0.00836 0.0116 0.01266 0.35% Castro::Castro() 1 0.01077 0.01163 0.01242 0.35% Castro::construct_old_source() 50 0.007514 0.01041 0.01114 0.31% Castro::construct_old_gravity_source() 10 0.007463 0.01034 0.01106 0.31% Castro::computeNewDt() 9 0.008783 0.008792 0.008806 0.24% Castro::initMFs() 1 0.007089 0.007734 0.008402 0.23% AmrLevel::AmrLevel(dm) 1 0.005897 0.006323 0.006744 0.19% StateData::define() 4 0.005883 0.006306 0.006726 0.19% Castro::enforce_min_density() 62 0.005736 0.006087 0.006694 0.19% Castro::swap_state_time_levels() 10 0.002753 0.004656 0.00544 0.15% Castro::finalize_advance() 10 0.00291 0.003757 0.004598 0.13% Castro::buildMetrics() 1 0.001783 0.001943 0.002114 0.06% Castro::finalize_do_advance() 10 0.0006822 0.001643 0.00205 0.06% Castro::post_regrid() 1 0.001539 0.001669 0.002005 0.06% Amr::InitAmr() 1 0.0002838 0.0003129 0.00041 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.102e-05 0.0001009 0.000129 0.00% DistributionMapping::LeastUsedCPUs() 1 6.27e-06 9.521e-05 0.0001208 0.00% FabArrayBase::getCPC() 41 6.541e-05 8.167e-05 9.942e-05 0.00% Castro::enforce_consistent_e() 1 7.821e-05 8.708e-05 9.515e-05 0.00% Amr::writeSmallPlotFile() 1 2.492e-05 4.716e-05 6.345e-05 0.00% Castro::enforce_speed_limit() 62 2.191e-05 2.717e-05 3.45e-05 0.00% FabArrayBase::CPC::define() 2 2.048e-05 2.322e-05 2.799e-05 0.00% Gravity::swapTimeLevels() 10 9.026e-06 1.292e-05 1.708e-05 0.00% Gravity::set_mass_offset() 10 8.856e-06 1.064e-05 1.187e-05 0.00% Castro::create_source_corrector() 10 7.777e-06 8.877e-06 1.092e-05 0.00% Amr::initSubcycle() 1 9.175e-06 1.007e-05 1.071e-05 0.00% Castro::FluxRegCrseInit 10 6.964e-06 8.257e-06 9.252e-06 0.00% Castro::retry_advance_ctu() 10 4.188e-06 5.584e-06 6.113e-06 0.00% Castro::FluxRegFineAdd() 10 2.015e-06 2.341e-06 2.927e-06 0.00% DistributionMapping::Distribute() 1 1.027e-06 1.079e-06 1.258e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-29-g76d6d344e12d) finalized