MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-29-g76d6d344e12d) initialized Starting run at 16:34:49 UTC on 2023-05-26. Successfully read inputs file ... Castro git describe: 23.05-29-g8a4c047e9 AMReX git describe: 23.05-29-g76d6d344e Microphysics git describe: 23.05-12-g1f8fd85f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017167625 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366918569 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.373201935 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341715411 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.342394688 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.422475332 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339017904 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31579053 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31449643 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313478757 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313062431 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010529743 seconds Ending run at 16:34:53 UTC on 2023-05-26. Run time = 3.647778976 Run time without initialization = 3.460614838 Average number of zones advanced per microsecond: 0.758 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.646 ... 3.647 ... 3.648 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2823 2.3927 2.4890 68.23% Gravity::make_radial_gravity() 21 0.3199 0.3351 0.3501 9.60% Castro::do_advance_ctu() 10 0.04557 0.1437 0.2581 7.08% Castro::estTimeStep() 21 0.02153 0.06942 0.116 3.18% Castro::initData() 1 0.03948 0.07914 0.1158 3.17% FabArray::setVal() 143 0.066 0.07268 0.08381 2.30% amrex::Copy() 193 0.06216 0.07349 0.08174 2.24% FabArray::ParallelCopy_finish() 41 0.03593 0.04908 0.07434 2.04% Castro::reset_internal_energy(Fab) 1008 0.04838 0.05011 0.05182 1.42% FabArray::ParallelCopy_nowait() 41 0.03519 0.04205 0.0443 1.21% Castro::normalize_species() 62 0.04144 0.04203 0.0431 1.18% StateData::FillBoundary(geom) 41 0.03268 0.03597 0.03975 1.09% FillPatchIterator::Initialize 41 0.02934 0.03482 0.03695 1.01% Castro::construct_new_gravity_source() 10 0.02271 0.02487 0.02905 0.80% Gravity::interpolate_monopole_grav() 21 0.02823 0.02843 0.02899 0.79% Castro::initialize_do_advance() 10 0.01232 0.01844 0.02305 0.63% Castro::computeTemp() 63 0.01938 0.02012 0.02088 0.57% VisMF::Write(FabArray) 2 0.01389 0.01467 0.01769 0.49% Castro::initialize_advance() 10 0.009616 0.01223 0.01509 0.41% FabArray::Saxpy() 20 0.01163 0.01354 0.01425 0.39% FabArray::setDomainBndry() 41 0.008487 0.01163 0.0131 0.36% MultiFab::contains_nan() 20 0.01022 0.01104 0.01205 0.33% Amr::writePlotFile() 2 0.007422 0.01029 0.01117 0.31% Castro::construct_old_gravity_source() 10 0.007094 0.009978 0.01082 0.30% Castro::initMFs() 1 0.007137 0.007578 0.008775 0.24% main() 1 0.005252 0.006163 0.006824 0.19% StateData::define() 4 0.005771 0.00601 0.006654 0.18% Castro::construct_new_source() 50 0.005488 0.006166 0.006456 0.18% Gravity::get_new_grav_vector() 11 0.003006 0.004295 0.0063 0.17% Castro::enforce_min_density() 62 0.005635 0.00593 0.006246 0.17% Castro::swap_state_time_levels() 10 0.003394 0.00463 0.005417 0.15% Gravity::get_old_grav_vector() 10 0.001638 0.00241 0.002757 0.08% Amr::coarseTimeStep() 10 0.001096 0.00195 0.002422 0.07% Castro::buildMetrics() 1 0.001636 0.001721 0.001928 0.05% Castro::finalize_do_advance() 10 0.0006841 0.001493 0.001806 0.05% Castro::expand_state() 10 0.0007678 0.0009217 0.001132 0.03% Amr::timeStep() 10 0.0002077 0.0002502 0.0004226 0.01% Amr::InitAmr() 1 0.0002718 0.000299 0.0004051 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002801 0.0002932 0.0003171 0.01% Castro::clean_state() 62 0.0001374 0.0001519 0.0001668 0.00% DistributionMapping::LeastUsedCPUs() 1 8.079e-06 0.0001027 0.0001283 0.00% StateDataPhysBCFunct::() 41 7.426e-05 9.598e-05 0.0001238 0.00% Castro::finalize_advance() 10 8.173e-05 0.0001035 0.0001196 0.00% Castro::enforce_consistent_e() 1 7.749e-05 8.573e-05 9.49e-05 0.00% Castro::Castro() 1 5.963e-05 7.004e-05 9.145e-05 0.00% Castro::do_old_sources() 10 4.346e-05 6.425e-05 8.631e-05 0.00% Amr::FinalizeInit() 1 4.141e-06 1.5e-05 8.459e-05 0.00% Castro::construct_old_source() 50 4.618e-05 6.641e-05 8.131e-05 0.00% FabArray::ParallelCopy() 41 6.832e-05 7.466e-05 8.061e-05 0.00% FillPatchSingleLevel 41 5.827e-05 6.926e-05 7.891e-05 0.00% FabArrayBase::getCPC() 41 3.755e-05 5.686e-05 7.226e-05 0.00% Castro::do_new_sources() 10 4.813e-05 6.336e-05 7.194e-05 0.00% Amr::writeSmallPlotFile() 1 2.533e-05 4.933e-05 6.614e-05 0.00% Amr::defBaseLevel() 1 2.708e-05 3.699e-05 5.311e-05 0.00% Castro::construct_new_gravity() 10 3.71e-05 4.367e-05 5.275e-05 0.00% Castro::subcycle_advance_ctu() 10 3.732e-05 4.406e-05 5.077e-05 0.00% Castro::apply_source_to_state() 20 3.236e-05 4.331e-05 4.949e-05 0.00% Castro::advance() 10 3.623e-05 4.29e-05 4.94e-05 0.00% Castro::construct_old_gravity() 10 3.368e-05 3.897e-05 4.525e-05 0.00% Castro::enforce_speed_limit() 62 2.311e-05 2.803e-05 3.454e-05 0.00% FabArrayBase::CPC::define() 2 1.983e-05 2.41e-05 3.194e-05 0.00% Castro::check_for_nan() 20 2.295e-05 2.514e-05 2.75e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.437e-05 1.662e-05 2.001e-05 0.00% Castro::post_timestep() 10 1.248e-05 1.418e-05 1.58e-05 0.00% Amr::initSubcycle() 1 8.936e-06 1.041e-05 1.579e-05 0.00% Gravity::swapTimeLevels() 10 1.076e-05 1.252e-05 1.428e-05 0.00% Gravity::set_mass_offset() 10 1.035e-05 1.16e-05 1.345e-05 0.00% Castro::computeNewDt() 9 7.876e-06 9.953e-06 1.099e-05 0.00% Castro::FluxRegCrseInit 10 6.713e-06 9.19e-06 1.054e-05 0.00% Castro::create_source_corrector() 10 8.01e-06 9.04e-06 9.829e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.804e-06 6.036e-06 9.68e-06 0.00% Castro::retry_advance_ctu() 10 4.67e-06 6.077e-06 7.251e-06 0.00% Castro::post_regrid() 1 2.242e-06 3.322e-06 4.946e-06 0.00% Castro::post_init() 1 3.078e-06 3.613e-06 4.69e-06 0.00% Amr::InitializeInit() 1 2.159e-06 3.056e-06 4.628e-06 0.00% Castro::computeInitialDt() 2 3.372e-06 4.152e-06 4.56e-06 0.00% Amr::init() 1 1.732e-06 2.271e-06 2.929e-06 0.00% Amr::initialInit() 1 1.718e-06 2.202e-06 2.894e-06 0.00% Castro::FluxRegFineAdd() 10 1.867e-06 2.292e-06 2.867e-06 0.00% DistributionMapping::Distribute() 1 8.68e-07 1.083e-06 1.329e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.646 3.647 3.648 100.00% Amr::coarseTimeStep() 10 3.443 3.443 3.443 94.39% Amr::timeStep() 10 3.431 3.432 3.433 94.10% Castro::advance() 10 3.415 3.416 3.416 93.65% Castro::subcycle_advance_ctu() 10 3.329 3.337 3.342 91.61% Castro::do_advance_ctu() 10 3.329 3.337 3.342 91.61% Castro::construct_ctu_hydro_source() 10 2.282 2.393 2.489 68.23% Gravity::make_radial_gravity() 21 0.3357 0.3521 0.3641 9.98% Gravity::get_new_grav_vector() 11 0.2269 0.2306 0.2322 6.37% Castro::construct_old_gravity() 10 0.1946 0.2062 0.2148 5.89% Gravity::get_old_grav_vector() 10 0.1939 0.2055 0.2142 5.87% Castro::construct_new_gravity() 10 0.2011 0.2035 0.2044 5.60% Amr::init() 1 0.1866 0.1867 0.1867 5.12% FillPatchIterator::Initialize 41 0.16 0.1739 0.1813 4.97% Castro::initialize_do_advance() 10 0.1571 0.1679 0.1755 4.81% Amr::initialInit() 1 0.1693 0.1696 0.17 4.66% FillPatchSingleLevel 41 0.119 0.1274 0.1434 3.93% Amr::InitializeInit() 1 0.06097 0.1011 0.1386 3.80% Amr::defBaseLevel() 1 0.06096 0.1011 0.1386 3.80% Castro::expand_state() 10 0.1056 0.1189 0.1277 3.50% Castro::clean_state() 62 0.1154 0.1177 0.1209 3.31% Castro::initData() 1 0.0436 0.08317 0.1193 3.27% Castro::estTimeStep() 21 0.02153 0.06942 0.116 3.18% FabArray::ParallelCopy() 41 0.07913 0.09129 0.1097 3.01% Amr::FinalizeInit() 1 0.03085 0.0685 0.1086 2.98% FabArray::setVal() 143 0.066 0.07268 0.08381 2.30% Castro::initialize_advance() 10 0.07042 0.07502 0.08322 2.28% amrex::Copy() 193 0.06216 0.07349 0.08174 2.24% Castro::computeInitialDt() 2 0.002199 0.03971 0.07984 2.19% Castro::do_new_sources() 10 0.06018 0.06655 0.07668 2.10% FabArray::ParallelCopy_finish() 41 0.03593 0.04908 0.07434 2.04% Castro::computeTemp() 63 0.06864 0.07053 0.07283 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04867 0.0504 0.05212 1.43% Castro::reset_internal_energy(Fab) 1008 0.04838 0.05011 0.05182 1.42% Castro::do_old_sources() 10 0.03858 0.04457 0.04578 1.25% FabArray::ParallelCopy_nowait() 41 0.03528 0.04213 0.04439 1.22% Castro::normalize_species() 62 0.04144 0.04203 0.0431 1.18% StateDataPhysBCFunct::() 41 0.03275 0.03607 0.03984 1.09% StateData::FillBoundary(geom) 41 0.03268 0.03597 0.03975 1.09% Castro::construct_new_source() 50 0.02901 0.03104 0.03524 0.97% Castro::construct_new_gravity_source() 10 0.02271 0.02487 0.02905 0.80% Gravity::interpolate_monopole_grav() 21 0.02823 0.02843 0.02899 0.79% Castro::post_init() 1 0.02813 0.02841 0.0289 0.79% Amr::writePlotFile() 2 0.02727 0.02774 0.02805 0.77% VisMF::Write(FabArray) 2 0.01389 0.01467 0.01769 0.49% Castro::post_timestep() 10 0.0156 0.0159 0.01622 0.44% Castro::apply_source_to_state() 20 0.01168 0.01358 0.01429 0.39% FabArray::Saxpy() 20 0.01163 0.01354 0.01425 0.39% FabArray::setDomainBndry() 41 0.008487 0.01163 0.0131 0.36% Castro::Castro() 1 0.01139 0.01172 0.01251 0.34% Castro::check_for_nan() 20 0.01025 0.01107 0.01207 0.33% MultiFab::contains_nan() 20 0.01022 0.01104 0.01205 0.33% Castro::construct_old_source() 50 0.00714 0.01004 0.0109 0.30% Castro::construct_old_gravity_source() 10 0.007094 0.009978 0.01082 0.30% Castro::initMFs() 1 0.007137 0.007578 0.008775 0.24% Castro::computeNewDt() 9 0.008428 0.008436 0.008443 0.23% AmrLevel::AmrLevel(dm) 1 0.005786 0.006027 0.006671 0.18% StateData::define() 4 0.005771 0.00601 0.006654 0.18% Castro::enforce_min_density() 62 0.005635 0.00593 0.006246 0.17% Castro::swap_state_time_levels() 10 0.003394 0.00463 0.005417 0.15% Castro::finalize_advance() 10 0.003047 0.003487 0.003963 0.11% Castro::buildMetrics() 1 0.001751 0.001852 0.002083 0.06% Castro::post_regrid() 1 0.001514 0.001613 0.001845 0.05% Castro::finalize_do_advance() 10 0.0006841 0.001493 0.001806 0.05% Amr::InitAmr() 1 0.0002814 0.0003094 0.0004144 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.297e-05 0.0001098 0.0001368 0.00% DistributionMapping::LeastUsedCPUs() 1 8.079e-06 0.0001027 0.0001283 0.00% FabArrayBase::getCPC() 41 6.832e-05 8.096e-05 9.885e-05 0.00% Castro::enforce_consistent_e() 1 7.749e-05 8.573e-05 9.49e-05 0.00% Amr::writeSmallPlotFile() 1 2.533e-05 4.933e-05 6.614e-05 0.00% Castro::enforce_speed_limit() 62 2.311e-05 2.803e-05 3.454e-05 0.00% FabArrayBase::CPC::define() 2 1.983e-05 2.41e-05 3.194e-05 0.00% Amr::initSubcycle() 1 8.936e-06 1.041e-05 1.579e-05 0.00% Gravity::swapTimeLevels() 10 1.076e-05 1.252e-05 1.428e-05 0.00% Gravity::set_mass_offset() 10 1.035e-05 1.16e-05 1.345e-05 0.00% Castro::FluxRegCrseInit 10 6.713e-06 9.19e-06 1.054e-05 0.00% Castro::create_source_corrector() 10 8.01e-06 9.04e-06 9.829e-06 0.00% Castro::retry_advance_ctu() 10 4.67e-06 6.077e-06 7.251e-06 0.00% Castro::FluxRegFineAdd() 10 1.867e-06 2.292e-06 2.867e-06 0.00% DistributionMapping::Distribute() 1 8.68e-07 1.083e-06 1.329e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-29-g76d6d344e12d) finalized