MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-29-g76d6d344e12d) initialized Starting run at 05:30:11 UTC on 2023-05-26. Successfully read inputs file ... Castro git describe: 23.05-25-g99ae92958 AMReX git describe: 23.05-29-g76d6d344e Microphysics git describe: 23.05-12-g1f8fd85f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015647434 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365597135 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.357033079 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33090271 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33136093 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354748075 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.36537116 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315113017 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314551649 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315103199 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316160568 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.047754209 seconds Ending run at 05:30:14 UTC on 2023-05-26. Run time = 3.600633647 Run time without initialization = 3.4212431 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.599 ... 3.6 ... 3.601 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2911 2.3521 2.3989 66.62% Gravity::make_radial_gravity() 21 0.3149 0.3258 0.3416 9.49% Castro::do_advance_ctu() 10 0.03827 0.08335 0.1432 3.98% Castro::initData() 1 0.04212 0.08696 0.1135 3.15% Castro::estTimeStep() 21 0.03893 0.06384 0.09757 2.71% FabArray::ParallelCopy_finish() 41 0.03517 0.06401 0.08963 2.49% FabArray::setVal() 143 0.06339 0.07308 0.08931 2.48% amrex::Copy() 193 0.06612 0.07509 0.08694 2.41% Castro::reset_internal_energy(Fab) 1008 0.04879 0.04982 0.05288 1.47% Amr::writePlotFile() 2 0.0442 0.04682 0.04818 1.34% Castro::normalize_species() 62 0.041 0.04241 0.04363 1.21% FabArray::ParallelCopy_nowait() 41 0.03491 0.04105 0.04285 1.19% FillPatchIterator::Initialize 41 0.02881 0.0342 0.0409 1.14% Castro::construct_new_gravity_source() 10 0.02169 0.02598 0.03929 1.09% StateData::FillBoundary(geom) 41 0.03447 0.03686 0.03897 1.08% Gravity::interpolate_monopole_grav() 21 0.02787 0.02831 0.0287 0.80% Castro::initialize_do_advance() 10 0.0119 0.01857 0.02443 0.68% Castro::computeTemp() 63 0.0196 0.02012 0.02108 0.59% FabArray::Saxpy() 20 0.01217 0.01456 0.01809 0.50% VisMF::Write(FabArray) 2 0.0133 0.01396 0.01661 0.46% Castro::initialize_advance() 10 0.009123 0.01171 0.01539 0.43% MultiFab::contains_nan() 20 0.01098 0.01202 0.01332 0.37% FabArray::setDomainBndry() 41 0.008596 0.01108 0.01246 0.35% Castro::construct_new_source() 50 0.005748 0.006885 0.01159 0.32% Castro::construct_old_gravity_source() 10 0.007204 0.01014 0.01108 0.31% Castro::initMFs() 1 0.007096 0.008373 0.01048 0.29% StateData::define() 4 0.005744 0.006755 0.008511 0.24% Amr::coarseTimeStep() 10 0.001406 0.006451 0.008346 0.23% main() 1 0.005394 0.006305 0.006899 0.19% Castro::enforce_min_density() 62 0.005745 0.005981 0.006289 0.17% Castro::swap_state_time_levels() 10 0.003395 0.004472 0.004866 0.14% Gravity::get_new_grav_vector() 11 0.003061 0.003587 0.004101 0.11% Gravity::get_old_grav_vector() 10 0.001727 0.002376 0.002823 0.08% Castro::buildMetrics() 1 0.001637 0.00193 0.002461 0.07% Castro::finalize_do_advance() 10 0.000711 0.001572 0.001914 0.05% Castro::expand_state() 10 0.0006659 0.0009682 0.001167 0.03% Amr::InitAmr() 1 0.000277 0.0003642 0.0006479 0.02% Amr::timeStep() 10 0.0002119 0.0002521 0.0004295 0.01% DistributionMapping::LeastUsedCPUs() 1 9.458e-06 0.0003343 0.0004234 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002726 0.0002877 0.0002975 0.01% Castro::clean_state() 62 0.0001253 0.0001477 0.0001644 0.00% Castro::enforce_consistent_e() 1 7.898e-05 9.254e-05 0.0001345 0.00% Castro::finalize_advance() 10 9.026e-05 0.000111 0.0001235 0.00% Castro::do_new_sources() 10 4.709e-05 6.627e-05 0.0001058 0.00% StateDataPhysBCFunct::() 41 7.593e-05 8.928e-05 0.0001025 0.00% Castro::Castro() 1 5.736e-05 6.74e-05 8.851e-05 0.00% FabArray::ParallelCopy() 41 6.305e-05 7.408e-05 8.787e-05 0.00% Amr::FinalizeInit() 1 3.72e-06 1.437e-05 8.42e-05 0.00% Castro::do_old_sources() 10 4.368e-05 6.369e-05 8.294e-05 0.00% FillPatchSingleLevel 41 6.242e-05 7.439e-05 8.104e-05 0.00% Castro::construct_old_source() 50 4.573e-05 6.688e-05 7.853e-05 0.00% Amr::writeSmallPlotFile() 1 2.573e-05 4.155e-05 6.596e-05 0.00% Castro::subcycle_advance_ctu() 10 3.726e-05 4.85e-05 6.402e-05 0.00% FabArrayBase::getCPC() 41 3.435e-05 5.169e-05 6.331e-05 0.00% Castro::apply_source_to_state() 20 3.327e-05 4.822e-05 6.229e-05 0.00% Castro::construct_old_gravity() 10 2.858e-05 4.144e-05 5.103e-05 0.00% Castro::construct_new_gravity() 10 3.642e-05 4.392e-05 5.058e-05 0.00% Amr::defBaseLevel() 1 2.323e-05 3.131e-05 4.437e-05 0.00% Castro::advance() 10 3.212e-05 4.078e-05 4.415e-05 0.00% FabArrayBase::CPC::define() 2 2.216e-05 2.429e-05 2.852e-05 0.00% Castro::enforce_speed_limit() 62 2.334e-05 2.5e-05 2.686e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.425e-05 2.08e-05 2.581e-05 0.00% Castro::check_for_nan() 20 1.992e-05 2.21e-05 2.488e-05 0.00% Gravity::set_mass_offset() 10 1.031e-05 1.202e-05 1.847e-05 0.00% Castro::post_timestep() 10 1.114e-05 1.447e-05 1.702e-05 0.00% Amr::initSubcycle() 1 8.839e-06 1.125e-05 1.611e-05 0.00% Castro::FluxRegCrseInit 10 7.119e-06 9.686e-06 1.611e-05 0.00% Gravity::swapTimeLevels() 10 9.128e-06 1.192e-05 1.515e-05 0.00% Castro::create_source_corrector() 10 6.908e-06 9.238e-06 1.417e-05 0.00% Castro::computeNewDt() 9 7.289e-06 8.815e-06 1.184e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.247e-06 5.648e-06 7.963e-06 0.00% Amr::InitializeInit() 1 2.04e-06 3.002e-06 6.891e-06 0.00% Castro::retry_advance_ctu() 10 4.448e-06 5.332e-06 6.142e-06 0.00% Castro::computeInitialDt() 2 2.856e-06 3.65e-06 4.919e-06 0.00% Castro::post_regrid() 1 1.935e-06 3.098e-06 4.234e-06 0.00% Castro::post_init() 1 2.436e-06 3.258e-06 3.73e-06 0.00% Amr::init() 1 1.71e-06 2.12e-06 2.95e-06 0.00% Castro::FluxRegFineAdd() 10 1.925e-06 2.247e-06 2.859e-06 0.00% Amr::initialInit() 1 1.283e-06 1.557e-06 1.798e-06 0.00% DistributionMapping::Distribute() 1 9.92e-07 1.312e-06 1.626e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.599 3.6 3.601 100.00% Amr::coarseTimeStep() 10 3.367 3.367 3.367 93.50% Amr::timeStep() 10 3.349 3.351 3.356 93.20% Castro::advance() 10 3.333 3.334 3.336 92.64% Castro::subcycle_advance_ctu() 10 3.241 3.252 3.26 90.53% Castro::do_advance_ctu() 10 3.241 3.252 3.26 90.53% Castro::construct_ctu_hydro_source() 10 2.291 2.352 2.399 66.62% Gravity::make_radial_gravity() 21 0.3314 0.343 0.3566 9.90% Gravity::get_new_grav_vector() 11 0.2215 0.2228 0.2234 6.20% Castro::construct_old_gravity() 10 0.197 0.2055 0.2169 6.02% Gravity::get_old_grav_vector() 10 0.1958 0.2045 0.2163 6.01% FillPatchIterator::Initialize 41 0.1653 0.1875 0.1996 5.54% Castro::construct_new_gravity() 10 0.1963 0.1971 0.1983 5.51% Castro::initialize_do_advance() 10 0.1679 0.1798 0.1908 5.30% Amr::init() 1 0.1785 0.1788 0.1789 4.97% Amr::initialInit() 1 0.1627 0.1632 0.1635 4.54% FillPatchSingleLevel 41 0.1126 0.1422 0.1606 4.46% Castro::expand_state() 10 0.1167 0.1308 0.1431 3.97% Amr::InitializeInit() 1 0.06487 0.1101 0.1341 3.73% Amr::defBaseLevel() 1 0.06487 0.1101 0.1341 3.73% FabArray::ParallelCopy() 41 0.07695 0.1052 0.1247 3.46% Castro::clean_state() 62 0.1148 0.1178 0.123 3.42% Castro::initData() 1 0.04575 0.09085 0.1174 3.26% Amr::FinalizeInit() 1 0.02915 0.05312 0.09847 2.73% Castro::estTimeStep() 21 0.03893 0.06384 0.09757 2.71% FabArray::ParallelCopy_finish() 41 0.03517 0.06401 0.08963 2.49% FabArray::setVal() 143 0.06339 0.07308 0.08931 2.48% Castro::initialize_advance() 10 0.07038 0.0775 0.08893 2.47% amrex::Copy() 193 0.06612 0.07509 0.08694 2.41% Castro::do_new_sources() 10 0.06034 0.06706 0.08453 2.35% Castro::computeTemp() 63 0.06869 0.07022 0.07425 2.06% Castro::computeInitialDt() 2 0.002045 0.026 0.07129 1.98% Amr::writePlotFile() 2 0.06329 0.06348 0.06373 1.77% Castro::reset_internal_energy(MultiFab) 63 0.04908 0.0501 0.05317 1.48% Castro::reset_internal_energy(Fab) 1008 0.04879 0.04982 0.05288 1.47% Castro::do_old_sources() 10 0.03942 0.04576 0.05084 1.41% Castro::construct_new_source() 50 0.02743 0.03287 0.04548 1.26% Castro::normalize_species() 62 0.041 0.04241 0.04363 1.21% FabArray::ParallelCopy_nowait() 41 0.03499 0.04113 0.04292 1.19% Castro::construct_new_gravity_source() 10 0.02169 0.02598 0.03929 1.09% StateDataPhysBCFunct::() 41 0.03454 0.03694 0.03905 1.08% StateData::FillBoundary(geom) 41 0.03447 0.03686 0.03897 1.08% Gravity::interpolate_monopole_grav() 21 0.02787 0.02831 0.0287 0.80% Castro::post_init() 1 0.02631 0.02659 0.02677 0.74% Castro::post_timestep() 10 0.01559 0.01635 0.01987 0.55% Castro::apply_source_to_state() 20 0.01221 0.0146 0.01814 0.50% FabArray::Saxpy() 20 0.01217 0.01456 0.01809 0.50% VisMF::Write(FabArray) 2 0.0133 0.01396 0.01661 0.46% Castro::Castro() 1 0.01045 0.01209 0.01479 0.41% Castro::check_for_nan() 20 0.011 0.01204 0.01334 0.37% MultiFab::contains_nan() 20 0.01098 0.01202 0.01332 0.37% FabArray::setDomainBndry() 41 0.008596 0.01108 0.01246 0.35% Castro::construct_old_source() 50 0.00725 0.01021 0.01116 0.31% Castro::construct_old_gravity_source() 10 0.007204 0.01014 0.01108 0.31% Castro::initMFs() 1 0.007096 0.008373 0.01048 0.29% AmrLevel::AmrLevel(dm) 1 0.005758 0.006776 0.008535 0.24% StateData::define() 4 0.005744 0.006755 0.008511 0.24% Castro::computeNewDt() 9 0.008421 0.008434 0.008441 0.23% Castro::enforce_min_density() 62 0.005745 0.005981 0.006289 0.17% Castro::finalize_advance() 10 0.002901 0.004255 0.005995 0.17% Castro::swap_state_time_levels() 10 0.003395 0.004472 0.004866 0.14% Castro::buildMetrics() 1 0.001764 0.002088 0.002684 0.07% Castro::finalize_do_advance() 10 0.000711 0.001572 0.001914 0.05% Castro::post_regrid() 1 0.00152 0.001607 0.001655 0.05% Amr::InitAmr() 1 0.0002864 0.0003754 0.000664 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.513e-05 0.0003413 0.0004308 0.01% DistributionMapping::LeastUsedCPUs() 1 9.458e-06 0.0003343 0.0004234 0.01% Castro::enforce_consistent_e() 1 7.898e-05 9.254e-05 0.0001345 0.00% FabArrayBase::getCPC() 41 5.849e-05 7.597e-05 8.89e-05 0.00% Amr::writeSmallPlotFile() 1 2.573e-05 4.155e-05 6.596e-05 0.00% FabArrayBase::CPC::define() 2 2.216e-05 2.429e-05 2.852e-05 0.00% Castro::enforce_speed_limit() 62 2.334e-05 2.5e-05 2.686e-05 0.00% Gravity::set_mass_offset() 10 1.031e-05 1.202e-05 1.847e-05 0.00% Amr::initSubcycle() 1 8.839e-06 1.125e-05 1.611e-05 0.00% Castro::FluxRegCrseInit 10 7.119e-06 9.686e-06 1.611e-05 0.00% Gravity::swapTimeLevels() 10 9.128e-06 1.192e-05 1.515e-05 0.00% Castro::create_source_corrector() 10 6.908e-06 9.238e-06 1.417e-05 0.00% Castro::retry_advance_ctu() 10 4.448e-06 5.332e-06 6.142e-06 0.00% Castro::FluxRegFineAdd() 10 1.925e-06 2.247e-06 2.859e-06 0.00% DistributionMapping::Distribute() 1 9.92e-07 1.312e-06 1.626e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-29-g76d6d344e12d) finalized