MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-29-g76d6d344e12d) initialized Starting run at 18:05:42 UTC on 2023-05-28. Successfully read inputs file ... Castro git describe: 23.05-33-gfaef3a317 AMReX git describe: 23.05-29-g76d6d344e Microphysics git describe: 23.05-13-gbf803460 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016315021 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.387099858 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.389593664 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.352444071 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332935619 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.373876979 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334268334 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315533148 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316419999 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315172236 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317237527 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010333489 seconds Ending run at 18:05:45 UTC on 2023-05-28. Run time = 3.690449217 Run time without initialization = 3.452096076 Average number of zones advanced per microsecond: 0.759 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.69 ... 3.69 ... 3.691 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3387 2.3803 2.4415 66.16% Gravity::make_radial_gravity() 21 0.3335 0.3455 0.3587 9.72% Castro::do_advance_ctu() 10 0.08105 0.145 0.1876 5.08% Castro::estTimeStep() 21 0.02235 0.1081 0.1632 4.42% Castro::initData() 1 0.03846 0.08715 0.1586 4.30% amrex::Copy() 193 0.06143 0.07204 0.08267 2.24% FabArray::ParallelCopy_finish() 41 0.03986 0.05462 0.08 2.17% FabArray::setVal() 143 0.05938 0.06661 0.07713 2.09% Castro::reset_internal_energy(Fab) 1008 0.049 0.05094 0.05398 1.46% Castro::normalize_species() 62 0.04121 0.04254 0.04431 1.20% FabArray::ParallelCopy_nowait() 41 0.03831 0.04177 0.04379 1.19% StateData::FillBoundary(geom) 41 0.03311 0.03609 0.04164 1.13% FillPatchIterator::Initialize 41 0.02918 0.03434 0.03647 0.99% Gravity::interpolate_monopole_grav() 21 0.02792 0.02845 0.02922 0.79% Castro::construct_new_gravity_source() 10 0.02268 0.02474 0.02836 0.77% Castro::computeTemp() 63 0.01981 0.02047 0.02134 0.58% Castro::initialize_do_advance() 10 0.01246 0.01779 0.02008 0.54% VisMF::Write(FabArray) 2 0.01366 0.01438 0.01715 0.46% FabArray::Saxpy() 20 0.01228 0.01364 0.01466 0.40% Castro::initialize_advance() 10 0.004035 0.01024 0.01419 0.38% MultiFab::contains_nan() 20 0.00993 0.01113 0.01324 0.36% FabArray::setDomainBndry() 41 0.008741 0.0115 0.01265 0.34% Castro::initMFs() 1 0.006948 0.007933 0.01084 0.29% Amr::writePlotFile() 2 0.007206 0.01008 0.01072 0.29% Castro::construct_old_gravity_source() 10 0.007429 0.009936 0.01046 0.28% StateData::define() 4 0.005754 0.006473 0.008387 0.23% main() 1 0.005529 0.006174 0.006485 0.18% Castro::construct_new_source() 50 0.005596 0.006096 0.006283 0.17% Castro::enforce_min_density() 62 0.005595 0.005969 0.006142 0.17% Castro::swap_state_time_levels() 10 0.003678 0.004748 0.005397 0.15% Gravity::get_new_grav_vector() 11 0.003154 0.003776 0.004185 0.11% Amr::coarseTimeStep() 10 0.001482 0.002181 0.002712 0.07% Gravity::get_old_grav_vector() 10 0.001836 0.002368 0.002705 0.07% Castro::buildMetrics() 1 0.001614 0.001827 0.002432 0.07% Castro::finalize_do_advance() 10 0.0006412 0.001716 0.002181 0.06% Castro::expand_state() 10 0.000757 0.001032 0.001303 0.04% Amr::InitAmr() 1 0.0002757 0.000351 0.000502 0.01% Amr::timeStep() 10 0.000162 0.000228 0.0004122 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002853 0.0003023 0.0003203 0.01% DistributionMapping::LeastUsedCPUs() 1 6.682e-06 0.0001947 0.0002798 0.01% Castro::clean_state() 62 0.0001443 0.0001601 0.0001898 0.01% Castro::enforce_consistent_e() 1 7.953e-05 9.946e-05 0.0001397 0.00% Castro::finalize_advance() 10 8.833e-05 0.0001047 0.0001229 0.00% StateDataPhysBCFunct::() 41 8.016e-05 9.593e-05 0.0001181 0.00% Castro::Castro() 1 6.045e-05 7.177e-05 8.323e-05 0.00% FillPatchSingleLevel 41 6.729e-05 7.333e-05 8.051e-05 0.00% FabArray::ParallelCopy() 41 6.845e-05 7.291e-05 7.718e-05 0.00% Castro::do_old_sources() 10 4.682e-05 6.165e-05 7.572e-05 0.00% Amr::FinalizeInit() 1 4.438e-06 1.412e-05 7.501e-05 0.00% FabArrayBase::getCPC() 41 4.089e-05 5.913e-05 7.474e-05 0.00% Castro::construct_old_source() 50 4.427e-05 6.041e-05 7.012e-05 0.00% Amr::writeSmallPlotFile() 1 2.542e-05 5.378e-05 6.676e-05 0.00% Castro::do_new_sources() 10 4.936e-05 5.845e-05 6.615e-05 0.00% Castro::construct_new_gravity() 10 3.486e-05 4.093e-05 5.506e-05 0.00% Amr::defBaseLevel() 1 2.933e-05 4.142e-05 5.419e-05 0.00% Castro::apply_source_to_state() 20 3.633e-05 4.426e-05 5.332e-05 0.00% Castro::advance() 10 3.524e-05 4.256e-05 5.135e-05 0.00% Castro::subcycle_advance_ctu() 10 3.528e-05 4.227e-05 5.077e-05 0.00% Castro::construct_old_gravity() 10 3.228e-05 3.623e-05 3.99e-05 0.00% Castro::enforce_speed_limit() 62 2.314e-05 2.703e-05 3.135e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.211e-05 2.22e-05 3.098e-05 0.00% Castro::check_for_nan() 20 2.241e-05 2.477e-05 2.832e-05 0.00% FabArrayBase::CPC::define() 2 2.02e-05 2.313e-05 2.639e-05 0.00% Gravity::swapTimeLevels() 10 1.045e-05 1.351e-05 2.283e-05 0.00% Castro::post_timestep() 10 1.213e-05 1.4e-05 1.689e-05 0.00% Amr::initSubcycle() 1 8.871e-06 1.084e-05 1.633e-05 0.00% Castro::computeNewDt() 9 8.327e-06 1.079e-05 1.297e-05 0.00% Gravity::set_mass_offset() 10 9.297e-06 1.055e-05 1.202e-05 0.00% Castro::computeInitialDt() 2 3.444e-06 5.14e-06 1.192e-05 0.00% Castro::FluxRegCrseInit 10 7.951e-06 9.088e-06 1.106e-05 0.00% Castro::post_init() 1 3.023e-06 5.179e-06 1.064e-05 0.00% Castro::create_source_corrector() 10 8.031e-06 8.864e-06 9.931e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.694e-06 5.45e-06 7.689e-06 0.00% Castro::post_regrid() 1 2.384e-06 3.673e-06 6.973e-06 0.00% Castro::retry_advance_ctu() 10 4.571e-06 5.356e-06 5.889e-06 0.00% Amr::InitializeInit() 1 1.898e-06 2.754e-06 5.395e-06 0.00% Amr::init() 1 1.656e-06 2.299e-06 2.722e-06 0.00% Castro::FluxRegFineAdd() 10 1.903e-06 2.266e-06 2.674e-06 0.00% Amr::initialInit() 1 1.497e-06 1.747e-06 2.177e-06 0.00% DistributionMapping::Distribute() 1 9.22e-07 1.206e-06 1.95e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.69 3.69 3.69 100.00% Amr::coarseTimeStep() 10 3.435 3.435 3.435 93.09% Amr::timeStep() 10 3.423 3.423 3.424 92.77% Castro::advance() 10 3.407 3.407 3.408 92.34% Castro::subcycle_advance_ctu() 10 3.327 3.334 3.344 90.61% Castro::do_advance_ctu() 10 3.327 3.334 3.344 90.61% Castro::construct_ctu_hydro_source() 10 2.339 2.38 2.441 66.16% Gravity::make_radial_gravity() 21 0.3502 0.3619 0.3768 10.21% Amr::init() 1 0.2377 0.2378 0.2379 6.45% Gravity::get_new_grav_vector() 11 0.2237 0.228 0.2303 6.24% Castro::construct_old_gravity() 10 0.2102 0.2184 0.2301 6.24% Gravity::get_old_grav_vector() 10 0.2094 0.2177 0.2296 6.22% Amr::initialInit() 1 0.221 0.2212 0.2214 6.00% Castro::construct_new_gravity() 10 0.1959 0.1988 0.2007 5.44% FillPatchIterator::Initialize 41 0.1684 0.1786 0.1932 5.24% Amr::InitializeInit() 1 0.05973 0.1103 0.1871 5.07% Amr::defBaseLevel() 1 0.05972 0.1103 0.1871 5.07% Castro::initialize_do_advance() 10 0.1607 0.1703 0.1771 4.80% Castro::initData() 1 0.04246 0.09139 0.1636 4.43% Castro::estTimeStep() 21 0.02235 0.1081 0.1632 4.42% Amr::FinalizeInit() 1 0.03424 0.111 0.1615 4.38% FillPatchSingleLevel 41 0.1203 0.1328 0.1551 4.20% Castro::computeInitialDt() 2 0.002737 0.07979 0.1304 3.53% Castro::expand_state() 10 0.1108 0.1214 0.1295 3.51% Castro::clean_state() 62 0.1158 0.1193 0.1247 3.38% FabArray::ParallelCopy() 41 0.08381 0.09654 0.1185 3.21% amrex::Copy() 193 0.06143 0.07204 0.08267 2.24% FabArray::ParallelCopy_finish() 41 0.03986 0.05462 0.08 2.17% FabArray::setVal() 143 0.05938 0.06661 0.07713 2.09% Castro::initialize_advance() 10 0.05868 0.0695 0.07702 2.09% Castro::computeTemp() 63 0.06959 0.07171 0.07561 2.05% Castro::do_new_sources() 10 0.05902 0.06472 0.07357 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04929 0.05124 0.05428 1.47% Castro::reset_internal_energy(Fab) 1008 0.049 0.05094 0.05398 1.46% Castro::do_old_sources() 10 0.04183 0.04501 0.04823 1.31% Castro::normalize_species() 62 0.04121 0.04254 0.04431 1.20% FabArray::ParallelCopy_nowait() 41 0.03842 0.04185 0.04387 1.19% StateDataPhysBCFunct::() 41 0.03322 0.03618 0.04172 1.13% StateData::FillBoundary(geom) 41 0.03311 0.03609 0.04164 1.13% Castro::construct_new_source() 50 0.02877 0.03083 0.03464 0.94% Castro::post_init() 1 0.02951 0.03038 0.03081 0.83% Gravity::interpolate_monopole_grav() 21 0.02792 0.02845 0.02922 0.79% Castro::construct_new_gravity_source() 10 0.02268 0.02474 0.02836 0.77% Amr::writePlotFile() 2 0.02668 0.02703 0.02727 0.74% VisMF::Write(FabArray) 2 0.01366 0.01438 0.01715 0.46% Castro::post_timestep() 10 0.01565 0.01587 0.0161 0.44% Castro::Castro() 1 0.01104 0.01213 0.01506 0.41% Castro::apply_source_to_state() 20 0.01232 0.01369 0.01472 0.40% FabArray::Saxpy() 20 0.01228 0.01364 0.01466 0.40% Castro::check_for_nan() 20 0.009957 0.01115 0.01326 0.36% MultiFab::contains_nan() 20 0.00993 0.01113 0.01324 0.36% FabArray::setDomainBndry() 41 0.008741 0.0115 0.01265 0.34% Castro::initMFs() 1 0.006948 0.007933 0.01084 0.29% Castro::construct_old_source() 50 0.007474 0.009996 0.01052 0.29% Castro::construct_old_gravity_source() 10 0.007429 0.009936 0.01046 0.28% Castro::computeNewDt() 9 0.008826 0.008833 0.008837 0.24% AmrLevel::AmrLevel(dm) 1 0.005771 0.006495 0.008412 0.23% StateData::define() 4 0.005754 0.006473 0.008387 0.23% Castro::enforce_min_density() 62 0.005595 0.005969 0.006142 0.17% Castro::swap_state_time_levels() 10 0.003678 0.004748 0.005397 0.15% Castro::finalize_advance() 10 0.002916 0.003284 0.00385 0.10% Castro::post_regrid() 1 0.001556 0.001983 0.002878 0.08% Castro::buildMetrics() 1 0.001737 0.001973 0.002636 0.07% Castro::finalize_do_advance() 10 0.0006412 0.001716 0.002181 0.06% Amr::InitAmr() 1 0.0002849 0.0003619 0.0005173 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.217e-05 0.0002013 0.0002883 0.01% DistributionMapping::LeastUsedCPUs() 1 6.682e-06 0.0001947 0.0002798 0.01% Castro::enforce_consistent_e() 1 7.953e-05 9.946e-05 0.0001397 0.00% FabArrayBase::getCPC() 41 6.537e-05 8.226e-05 0.0001011 0.00% Amr::writeSmallPlotFile() 1 2.542e-05 5.378e-05 6.676e-05 0.00% Castro::enforce_speed_limit() 62 2.314e-05 2.703e-05 3.135e-05 0.00% FabArrayBase::CPC::define() 2 2.02e-05 2.313e-05 2.639e-05 0.00% Gravity::swapTimeLevels() 10 1.045e-05 1.351e-05 2.283e-05 0.00% Amr::initSubcycle() 1 8.871e-06 1.084e-05 1.633e-05 0.00% Gravity::set_mass_offset() 10 9.297e-06 1.055e-05 1.202e-05 0.00% Castro::FluxRegCrseInit 10 7.951e-06 9.088e-06 1.106e-05 0.00% Castro::create_source_corrector() 10 8.031e-06 8.864e-06 9.931e-06 0.00% Castro::retry_advance_ctu() 10 4.571e-06 5.356e-06 5.889e-06 0.00% Castro::FluxRegFineAdd() 10 1.903e-06 2.266e-06 2.674e-06 0.00% DistributionMapping::Distribute() 1 9.22e-07 1.206e-06 1.95e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-29-g76d6d344e12d) finalized