MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-30-g07f87b0a9047) initialized Starting run at 18:35:13 UTC on 2023-05-29. Successfully read inputs file ... Castro git describe: 23.05-29-gce1e3ba5e AMReX git describe: 23.05-30-g07f87b0a9 Microphysics git describe: 23.05-13-gbf803460 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016668288 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.372285775 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339396677 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337983334 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334684962 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368691302 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344495407 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313389304 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314171222 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311956897 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313055886 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010321996 seconds Ending run at 18:35:17 UTC on 2023-05-29. Run time = 3.587703549 Run time without initialization = 3.36823936 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.586 ... 3.587 ... 3.588 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3190 2.3588 2.4084 67.13% Gravity::make_radial_gravity() 21 0.3219 0.3372 0.348 9.70% Castro::initData() 1 0.04025 0.09045 0.144 4.01% Castro::estTimeStep() 21 0.03936 0.09057 0.1411 3.93% Castro::do_advance_ctu() 10 0.02996 0.08387 0.1276 3.56% FabArray::ParallelCopy_finish() 41 0.04045 0.05478 0.08433 2.35% FabArray::setVal() 143 0.06261 0.07033 0.08319 2.32% amrex::Copy() 193 0.06226 0.07077 0.07909 2.20% Castro::reset_internal_energy(Fab) 1008 0.04873 0.05065 0.05403 1.51% Castro::normalize_species() 62 0.04092 0.04205 0.04322 1.20% FabArray::ParallelCopy_nowait() 41 0.0366 0.04092 0.04283 1.19% StateData::FillBoundary(geom) 41 0.03298 0.03554 0.04043 1.13% FillPatchIterator::Initialize 41 0.0298 0.03352 0.03585 1.00% Castro::construct_new_gravity_source() 10 0.02253 0.02562 0.03001 0.84% Gravity::interpolate_monopole_grav() 21 0.0279 0.02839 0.02894 0.81% Castro::computeTemp() 63 0.01905 0.02027 0.02158 0.60% Castro::initialize_do_advance() 10 0.01272 0.01811 0.02111 0.59% VisMF::Write(FabArray) 2 0.01357 0.01449 0.01747 0.49% FabArray::Saxpy() 20 0.01261 0.0139 0.01481 0.41% Castro::initialize_advance() 10 0.00405 0.01042 0.01461 0.41% FabArray::setDomainBndry() 41 0.008694 0.01105 0.01231 0.34% MultiFab::contains_nan() 20 0.01011 0.01094 0.01186 0.33% Amr::writePlotFile() 2 0.007117 0.01009 0.0109 0.30% Castro::construct_old_gravity_source() 10 0.007552 0.01019 0.01079 0.30% Castro::initMFs() 1 0.006861 0.008253 0.01027 0.29% StateData::define() 4 0.005792 0.00689 0.008544 0.24% main() 1 0.005176 0.006305 0.007067 0.20% Castro::enforce_min_density() 62 0.005645 0.006028 0.006687 0.19% Castro::construct_new_source() 50 0.005787 0.006218 0.006411 0.18% Gravity::get_new_grav_vector() 11 0.003051 0.003892 0.005836 0.16% Castro::swap_state_time_levels() 10 0.003344 0.004636 0.005354 0.15% Amr::coarseTimeStep() 10 0.001597 0.002809 0.003715 0.10% Gravity::get_old_grav_vector() 10 0.001731 0.002283 0.002707 0.08% Castro::buildMetrics() 1 0.001625 0.001948 0.002409 0.07% Castro::finalize_do_advance() 10 0.0006762 0.001465 0.001747 0.05% Castro::expand_state() 10 0.0007362 0.0008106 0.0009375 0.03% Amr::InitAmr() 1 0.0002878 0.0003645 0.0005106 0.01% Amr::timeStep() 10 0.0001611 0.0002481 0.0004778 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002863 0.0002953 0.0003158 0.01% DistributionMapping::LeastUsedCPUs() 1 6.078e-06 0.0001833 0.0002774 0.01% Castro::clean_state() 62 0.0001283 0.0001567 0.0001865 0.01% Castro::enforce_consistent_e() 1 8.033e-05 0.0001032 0.0001763 0.00% Castro::finalize_advance() 10 7.274e-05 9.899e-05 0.0001207 0.00% StateDataPhysBCFunct::() 41 7.169e-05 9.158e-05 0.0001169 0.00% Amr::FinalizeInit() 1 4.072e-06 1.72e-05 0.0001019 0.00% Castro::construct_old_source() 50 4.298e-05 6.519e-05 8.751e-05 0.00% FillPatchSingleLevel 41 6.068e-05 6.915e-05 7.916e-05 0.00% FabArray::ParallelCopy() 41 5.965e-05 6.846e-05 7.641e-05 0.00% Castro::Castro() 1 5.756e-05 6.687e-05 7.552e-05 0.00% Castro::do_old_sources() 10 4.464e-05 6.015e-05 7.159e-05 0.00% Castro::do_new_sources() 10 4.928e-05 6.077e-05 7.159e-05 0.00% FabArrayBase::getCPC() 41 3.867e-05 4.876e-05 6.549e-05 0.00% Amr::writeSmallPlotFile() 1 2.915e-05 4.414e-05 6.058e-05 0.00% Castro::advance() 10 3.5e-05 4.246e-05 5.897e-05 0.00% Castro::subcycle_advance_ctu() 10 3.338e-05 4.317e-05 5.258e-05 0.00% Castro::apply_source_to_state() 20 3.543e-05 4.43e-05 4.99e-05 0.00% Castro::construct_new_gravity() 10 3.482e-05 4.178e-05 4.949e-05 0.00% Amr::defBaseLevel() 1 2.809e-05 3.606e-05 4.946e-05 0.00% Castro::construct_old_gravity() 10 3.243e-05 3.871e-05 4.346e-05 0.00% Castro::enforce_speed_limit() 62 2.475e-05 2.965e-05 3.62e-05 0.00% Castro::check_for_nan() 20 2.334e-05 2.632e-05 3.612e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.569e-05 2.296e-05 2.816e-05 0.00% FabArrayBase::CPC::define() 2 2.24e-05 2.419e-05 2.635e-05 0.00% Castro::post_timestep() 10 1.231e-05 1.459e-05 1.691e-05 0.00% Gravity::set_mass_offset() 10 9.327e-06 1.179e-05 1.663e-05 0.00% Amr::initSubcycle() 1 9.354e-06 1.149e-05 1.583e-05 0.00% Gravity::swapTimeLevels() 10 7.919e-06 1.214e-05 1.507e-05 0.00% Castro::computeNewDt() 9 8.035e-06 9.929e-06 1.257e-05 0.00% Castro::create_source_corrector() 10 7.53e-06 8.908e-06 1.078e-05 0.00% Castro::FluxRegCrseInit 10 6.97e-06 8.236e-06 9.984e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.035e-06 5.451e-06 9.669e-06 0.00% Amr::init() 1 1.898e-06 3.083e-06 9.379e-06 0.00% Castro::post_regrid() 1 2.382e-06 3.956e-06 7.269e-06 0.00% Castro::retry_advance_ctu() 10 4.643e-06 5.723e-06 7.059e-06 0.00% Castro::computeInitialDt() 2 2.975e-06 4.224e-06 4.991e-06 0.00% Amr::InitializeInit() 1 2.4e-06 3.085e-06 4.972e-06 0.00% Castro::post_init() 1 2.753e-06 3.58e-06 4.816e-06 0.00% Castro::FluxRegFineAdd() 10 2e-06 2.307e-06 2.551e-06 0.00% Amr::initialInit() 1 1.379e-06 1.731e-06 2.056e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.198e-06 1.646e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.586 3.587 3.588 100.00% Amr::coarseTimeStep() 10 3.351 3.351 3.351 93.40% Amr::timeStep() 10 3.337 3.338 3.339 93.08% Castro::advance() 10 3.321 3.322 3.323 92.61% Castro::subcycle_advance_ctu() 10 3.236 3.246 3.254 90.69% Castro::do_advance_ctu() 10 3.236 3.246 3.254 90.69% Castro::construct_ctu_hydro_source() 10 2.319 2.359 2.408 67.13% Gravity::make_radial_gravity() 21 0.3373 0.3534 0.3618 10.08% Gravity::get_new_grav_vector() 11 0.2235 0.2283 0.231 6.44% Amr::init() 1 0.2188 0.2189 0.219 6.11% Castro::construct_old_gravity() 10 0.1961 0.2079 0.2139 5.96% Gravity::get_old_grav_vector() 10 0.1954 0.2072 0.2132 5.94% Castro::construct_new_gravity() 10 0.1968 0.2009 0.2029 5.66% Amr::initialInit() 1 0.2019 0.2022 0.2027 5.65% FillPatchIterator::Initialize 41 0.1554 0.1761 0.1932 5.38% Castro::initialize_do_advance() 10 0.1565 0.1709 0.1779 4.96% Amr::InitializeInit() 1 0.05983 0.1138 0.1708 4.76% Amr::defBaseLevel() 1 0.05983 0.1138 0.1708 4.76% FillPatchSingleLevel 41 0.1157 0.1315 0.1547 4.31% Castro::initData() 1 0.0438 0.09462 0.1477 4.12% Amr::FinalizeInit() 1 0.03109 0.08845 0.1422 3.96% Castro::estTimeStep() 21 0.03936 0.09057 0.1411 3.93% Castro::expand_state() 10 0.1049 0.1222 0.131 3.65% Castro::clean_state() 62 0.1149 0.1184 0.1231 3.43% FabArray::ParallelCopy() 41 0.08258 0.09584 0.1211 3.37% Castro::computeInitialDt() 2 0.002186 0.05941 0.1133 3.16% FabArray::ParallelCopy_finish() 41 0.04045 0.05478 0.08433 2.35% FabArray::setVal() 143 0.06261 0.07033 0.08319 2.32% Castro::initialize_advance() 10 0.06383 0.07264 0.0824 2.30% amrex::Copy() 193 0.06226 0.07077 0.07909 2.20% Castro::do_new_sources() 10 0.05962 0.06695 0.0776 2.16% Castro::computeTemp() 63 0.06851 0.07122 0.07501 2.09% Castro::reset_internal_energy(MultiFab) 63 0.04902 0.05095 0.05432 1.51% Castro::reset_internal_energy(Fab) 1008 0.04873 0.05065 0.05403 1.51% Castro::do_old_sources() 10 0.03987 0.045 0.04644 1.29% Castro::normalize_species() 62 0.04092 0.04205 0.04322 1.20% FabArray::ParallelCopy_nowait() 41 0.03666 0.04099 0.0429 1.20% StateDataPhysBCFunct::() 41 0.03306 0.03563 0.04052 1.13% StateData::FillBoundary(geom) 41 0.03298 0.03554 0.04043 1.13% Castro::construct_new_source() 50 0.02857 0.03184 0.03642 1.02% Castro::construct_new_gravity_source() 10 0.02253 0.02562 0.03001 0.84% Gravity::interpolate_monopole_grav() 21 0.0279 0.02839 0.02894 0.81% Castro::post_init() 1 0.02841 0.02855 0.02868 0.80% Amr::writePlotFile() 2 0.02672 0.0271 0.0273 0.76% VisMF::Write(FabArray) 2 0.01357 0.01449 0.01747 0.49% Castro::post_timestep() 10 0.01553 0.01592 0.01676 0.47% Castro::apply_source_to_state() 20 0.01265 0.01395 0.01486 0.41% FabArray::Saxpy() 20 0.01261 0.0139 0.01481 0.41% Castro::Castro() 1 0.009983 0.01203 0.01451 0.40% FabArray::setDomainBndry() 41 0.008694 0.01105 0.01231 0.34% Castro::check_for_nan() 20 0.01013 0.01097 0.01189 0.33% MultiFab::contains_nan() 20 0.01011 0.01094 0.01186 0.33% Castro::construct_old_source() 50 0.007595 0.01026 0.01087 0.30% Castro::construct_old_gravity_source() 10 0.007552 0.01019 0.01079 0.30% Castro::initMFs() 1 0.006861 0.008253 0.01027 0.29% Castro::computeNewDt() 9 0.008719 0.008728 0.008735 0.24% AmrLevel::AmrLevel(dm) 1 0.005819 0.006913 0.008564 0.24% StateData::define() 4 0.005792 0.00689 0.008544 0.24% Castro::enforce_min_density() 62 0.005645 0.006028 0.006687 0.19% Castro::swap_state_time_levels() 10 0.003344 0.004636 0.005354 0.15% Castro::finalize_advance() 10 0.003065 0.00369 0.004604 0.13% Castro::buildMetrics() 1 0.00175 0.002102 0.002636 0.07% Castro::post_regrid() 1 0.001525 0.001715 0.001991 0.06% Castro::finalize_do_advance() 10 0.0006762 0.001465 0.001747 0.05% Amr::InitAmr() 1 0.0002975 0.000376 0.000526 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.131e-05 0.0001899 0.0002859 0.01% DistributionMapping::LeastUsedCPUs() 1 6.078e-06 0.0001833 0.0002774 0.01% Castro::enforce_consistent_e() 1 8.033e-05 0.0001032 0.0001763 0.00% FabArrayBase::getCPC() 41 6.365e-05 7.295e-05 8.988e-05 0.00% Amr::writeSmallPlotFile() 1 2.915e-05 4.414e-05 6.058e-05 0.00% Castro::enforce_speed_limit() 62 2.475e-05 2.965e-05 3.62e-05 0.00% FabArrayBase::CPC::define() 2 2.24e-05 2.419e-05 2.635e-05 0.00% Gravity::set_mass_offset() 10 9.327e-06 1.179e-05 1.663e-05 0.00% Amr::initSubcycle() 1 9.354e-06 1.149e-05 1.583e-05 0.00% Gravity::swapTimeLevels() 10 7.919e-06 1.214e-05 1.507e-05 0.00% Castro::create_source_corrector() 10 7.53e-06 8.908e-06 1.078e-05 0.00% Castro::FluxRegCrseInit 10 6.97e-06 8.236e-06 9.984e-06 0.00% Castro::retry_advance_ctu() 10 4.643e-06 5.723e-06 7.059e-06 0.00% Castro::FluxRegFineAdd() 10 2e-06 2.307e-06 2.551e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.198e-06 1.646e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-30-g07f87b0a9047) finalized