MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-29-g76d6d344e12d) initialized Starting run at 05:31:06 UTC on 2023-05-29. Successfully read inputs file ... Castro git describe: 23.05-30-g283f15d69 AMReX git describe: 23.05-29-g76d6d344e Microphysics git describe: 23.05-13-gbf803460 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015611777 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.352812404 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.340609055 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335874968 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336812514 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362180983 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347750537 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.320440528 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316030246 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315801477 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318765368 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010320901 seconds Ending run at 05:31:10 UTC on 2023-05-29. Run time = 3.586380488 Run time without initialization = 3.365103932 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.585 ... 3.586 ... 3.586 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3040 2.3624 2.4277 67.69% Gravity::make_radial_gravity() 21 0.319 0.331 0.3463 9.65% Castro::estTimeStep() 21 0.03574 0.09676 0.1553 4.33% Castro::initData() 1 0.03843 0.08678 0.1461 4.07% Castro::do_advance_ctu() 10 0.01124 0.07984 0.1408 3.93% FabArray::setVal() 143 0.06253 0.07217 0.08847 2.47% FabArray::ParallelCopy_finish() 41 0.0354 0.05607 0.08786 2.45% amrex::Copy() 193 0.06174 0.07364 0.081 2.26% Castro::reset_internal_energy(Fab) 1008 0.04832 0.05063 0.05311 1.48% Castro::normalize_species() 62 0.04114 0.04238 0.04344 1.21% FabArray::ParallelCopy_nowait() 41 0.0355 0.04108 0.04275 1.19% StateData::FillBoundary(geom) 41 0.03231 0.03506 0.03773 1.05% FillPatchIterator::Initialize 41 0.029 0.03328 0.03554 0.99% Castro::construct_new_gravity_source() 10 0.02239 0.02551 0.03023 0.84% Gravity::interpolate_monopole_grav() 21 0.02806 0.0283 0.02865 0.80% Castro::initialize_do_advance() 10 0.01176 0.01738 0.02201 0.61% Castro::computeTemp() 63 0.01965 0.02033 0.02071 0.58% VisMF::Write(FabArray) 2 0.01325 0.01396 0.01664 0.46% FabArray::Saxpy() 20 0.01241 0.01391 0.01458 0.41% Castro::initialize_advance() 10 0.004125 0.01032 0.01424 0.40% FabArray::setDomainBndry() 41 0.008543 0.01119 0.01258 0.35% MultiFab::contains_nan() 20 0.01002 0.01102 0.01166 0.33% Amr::writePlotFile() 2 0.006742 0.009447 0.01119 0.31% Castro::construct_old_gravity_source() 10 0.007136 0.01005 0.01072 0.30% Castro::initMFs() 1 0.006899 0.008029 0.01065 0.30% StateData::define() 4 0.005746 0.006578 0.00857 0.24% main() 1 0.005461 0.006372 0.007062 0.20% Castro::enforce_min_density() 62 0.005782 0.006147 0.006772 0.19% Castro::construct_new_source() 50 0.005607 0.006238 0.006493 0.18% Gravity::get_new_grav_vector() 11 0.003152 0.003891 0.005913 0.16% Castro::swap_state_time_levels() 10 0.003355 0.004424 0.004752 0.13% Amr::coarseTimeStep() 10 0.001399 0.002244 0.002759 0.08% Gravity::get_old_grav_vector() 10 0.001871 0.002372 0.00271 0.08% Castro::buildMetrics() 1 0.001609 0.001871 0.002464 0.07% Castro::finalize_do_advance() 10 0.0006949 0.001559 0.001926 0.05% Castro::expand_state() 10 0.0007168 0.0009163 0.00107 0.03% Amr::InitAmr() 1 0.0002651 0.0003524 0.000653 0.02% Amr::timeStep() 10 0.0001693 0.000237 0.0004602 0.01% DistributionMapping::LeastUsedCPUs() 1 9.454e-06 0.0003465 0.0004397 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002763 0.0002877 0.0003024 0.01% Castro::clean_state() 62 0.0001397 0.0001777 0.0002261 0.01% StateDataPhysBCFunct::() 41 7.549e-05 9.751e-05 0.0001218 0.00% Castro::finalize_advance() 10 7.502e-05 9.879e-05 0.0001199 0.00% Castro::enforce_consistent_e() 1 8.358e-05 9.327e-05 0.0001143 0.00% FabArray::ParallelCopy() 41 6.456e-05 7.52e-05 9.722e-05 0.00% Castro::construct_old_source() 50 4.283e-05 6.598e-05 8.139e-05 0.00% Castro::Castro() 1 5.555e-05 6.67e-05 7.682e-05 0.00% Amr::FinalizeInit() 1 3.689e-06 1.371e-05 7.637e-05 0.00% FabArrayBase::getCPC() 41 3.813e-05 5.253e-05 7.357e-05 0.00% Castro::do_new_sources() 10 4.789e-05 6.286e-05 7.249e-05 0.00% FillPatchSingleLevel 41 6.227e-05 6.8e-05 7.072e-05 0.00% Amr::writeSmallPlotFile() 1 2.524e-05 4.967e-05 6.808e-05 0.00% Amr::defBaseLevel() 1 3.05e-05 4.641e-05 6.756e-05 0.00% Castro::do_old_sources() 10 4.185e-05 5.716e-05 6.686e-05 0.00% Castro::subcycle_advance_ctu() 10 3.436e-05 4.478e-05 5.87e-05 0.00% Castro::apply_source_to_state() 20 3.886e-05 4.621e-05 5.058e-05 0.00% Castro::construct_old_gravity() 10 3.566e-05 3.987e-05 4.838e-05 0.00% Castro::construct_new_gravity() 10 3.556e-05 3.961e-05 4.627e-05 0.00% Castro::advance() 10 3.461e-05 4.096e-05 4.513e-05 0.00% Castro::enforce_speed_limit() 62 2.168e-05 2.843e-05 3.436e-05 0.00% FabArrayBase::CPC::define() 2 2.08e-05 2.357e-05 3.101e-05 0.00% Castro::check_for_nan() 20 2.111e-05 2.355e-05 2.503e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.349e-05 1.921e-05 2.438e-05 0.00% Castro::post_timestep() 10 1.269e-05 1.721e-05 2.362e-05 0.00% Amr::initSubcycle() 1 8.813e-06 1.082e-05 1.543e-05 0.00% Gravity::set_mass_offset() 10 9.099e-06 1.094e-05 1.393e-05 0.00% Gravity::swapTimeLevels() 10 9.631e-06 1.123e-05 1.264e-05 0.00% Castro::computeNewDt() 9 8.132e-06 1.008e-05 1.178e-05 0.00% Castro::create_source_corrector() 10 7.576e-06 8.867e-06 1.078e-05 0.00% Castro::FluxRegCrseInit 10 7.243e-06 8.46e-06 9.648e-06 0.00% Castro::post_init() 1 2.193e-06 4.577e-06 9.263e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.796e-06 4.989e-06 7.129e-06 0.00% Amr::InitializeInit() 1 2.132e-06 3.277e-06 7.128e-06 0.00% Castro::retry_advance_ctu() 10 4.283e-06 4.858e-06 5.588e-06 0.00% Castro::computeInitialDt() 2 3.486e-06 4.036e-06 5.184e-06 0.00% Castro::post_regrid() 1 2.216e-06 2.941e-06 3.999e-06 0.00% Amr::init() 1 1.62e-06 2.263e-06 2.845e-06 0.00% Castro::FluxRegFineAdd() 10 1.872e-06 2.33e-06 2.772e-06 0.00% Amr::initialInit() 1 1.443e-06 1.819e-06 2.317e-06 0.00% DistributionMapping::Distribute() 1 9.56e-07 1.135e-06 1.416e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.585 3.586 3.586 100.00% Amr::coarseTimeStep() 10 3.348 3.348 3.348 93.35% Amr::timeStep() 10 3.336 3.336 3.337 93.04% Castro::advance() 10 3.319 3.32 3.321 92.59% Castro::subcycle_advance_ctu() 10 3.23 3.242 3.25 90.63% Castro::do_advance_ctu() 10 3.23 3.242 3.25 90.63% Castro::construct_ctu_hydro_source() 10 2.304 2.362 2.428 67.69% Gravity::make_radial_gravity() 21 0.3354 0.3481 0.36 10.04% Gravity::get_new_grav_vector() 11 0.2253 0.2294 0.2319 6.46% Amr::init() 1 0.2204 0.2208 0.2208 6.16% Castro::construct_old_gravity() 10 0.1942 0.2015 0.2102 5.86% Gravity::get_old_grav_vector() 10 0.1935 0.2008 0.2096 5.84% Amr::initialInit() 1 0.2046 0.2051 0.2054 5.73% Castro::construct_new_gravity() 10 0.199 0.2026 0.2045 5.70% FillPatchIterator::Initialize 41 0.1597 0.177 0.1945 5.42% Castro::initialize_do_advance() 10 0.1609 0.1721 0.1826 5.09% Amr::InitializeInit() 1 0.0594 0.1097 0.1742 4.86% Amr::defBaseLevel() 1 0.05939 0.1097 0.1742 4.86% FillPatchSingleLevel 41 0.1158 0.1325 0.157 4.38% Castro::estTimeStep() 21 0.03574 0.09676 0.1553 4.33% Castro::initData() 1 0.04232 0.09074 0.1505 4.20% Amr::FinalizeInit() 1 0.03053 0.09538 0.1456 4.06% Castro::expand_state() 10 0.1105 0.1242 0.1359 3.79% FabArray::ParallelCopy() 41 0.07816 0.0973 0.1235 3.44% Castro::clean_state() 62 0.116 0.119 0.1232 3.44% Castro::computeInitialDt() 2 0.002262 0.06696 0.1174 3.27% FabArray::setVal() 143 0.06253 0.07217 0.08847 2.47% FabArray::ParallelCopy_finish() 41 0.0354 0.05607 0.08786 2.45% Castro::initialize_advance() 10 0.06464 0.07354 0.08581 2.39% amrex::Copy() 193 0.06174 0.07364 0.081 2.26% Castro::do_new_sources() 10 0.0596 0.06726 0.07823 2.18% Castro::computeTemp() 63 0.06825 0.07125 0.0741 2.07% Castro::reset_internal_energy(MultiFab) 63 0.0486 0.05092 0.05339 1.49% Castro::reset_internal_energy(Fab) 1008 0.04832 0.05063 0.05311 1.48% Castro::do_old_sources() 10 0.03997 0.04495 0.04625 1.29% Castro::normalize_species() 62 0.04114 0.04238 0.04344 1.21% FabArray::ParallelCopy_nowait() 41 0.03558 0.04116 0.04282 1.19% StateDataPhysBCFunct::() 41 0.03242 0.03516 0.03785 1.06% StateData::FillBoundary(geom) 41 0.03231 0.03506 0.03773 1.05% Castro::construct_new_source() 50 0.02868 0.03175 0.03668 1.02% Castro::construct_new_gravity_source() 10 0.02239 0.02551 0.03023 0.84% Gravity::interpolate_monopole_grav() 21 0.02806 0.0283 0.02865 0.80% Castro::post_init() 1 0.02755 0.02788 0.02818 0.79% Amr::writePlotFile() 2 0.02583 0.02606 0.02623 0.73% VisMF::Write(FabArray) 2 0.01325 0.01396 0.01664 0.46% Castro::post_timestep() 10 0.0159 0.01607 0.01628 0.45% Castro::Castro() 1 0.0108 0.01197 0.01491 0.42% Castro::apply_source_to_state() 20 0.01245 0.01396 0.01462 0.41% FabArray::Saxpy() 20 0.01241 0.01391 0.01458 0.41% FabArray::setDomainBndry() 41 0.008543 0.01119 0.01258 0.35% Castro::check_for_nan() 20 0.01004 0.01104 0.01168 0.33% MultiFab::contains_nan() 20 0.01002 0.01102 0.01166 0.33% Castro::construct_old_source() 50 0.007179 0.01012 0.0108 0.30% Castro::construct_old_gravity_source() 10 0.007136 0.01005 0.01072 0.30% Castro::initMFs() 1 0.006899 0.008029 0.01065 0.30% AmrLevel::AmrLevel(dm) 1 0.00577 0.006597 0.008594 0.24% StateData::define() 4 0.005746 0.006578 0.00857 0.24% Castro::computeNewDt() 9 0.008424 0.008431 0.00844 0.24% Castro::enforce_min_density() 62 0.005782 0.006147 0.006772 0.19% Castro::swap_state_time_levels() 10 0.003355 0.004424 0.004752 0.13% Castro::finalize_advance() 10 0.002921 0.003809 0.004646 0.13% Castro::buildMetrics() 1 0.001721 0.002015 0.002677 0.07% Castro::finalize_do_advance() 10 0.0006949 0.001559 0.001926 0.05% Castro::post_regrid() 1 0.001526 0.001625 0.001811 0.05% Amr::InitAmr() 1 0.000274 0.0003632 0.0006685 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.498e-05 0.0003526 0.0004479 0.01% DistributionMapping::LeastUsedCPUs() 1 9.454e-06 0.0003465 0.0004397 0.01% Castro::enforce_consistent_e() 1 8.358e-05 9.327e-05 0.0001143 0.00% FabArrayBase::getCPC() 41 6.124e-05 7.61e-05 9.668e-05 0.00% Amr::writeSmallPlotFile() 1 2.524e-05 4.967e-05 6.808e-05 0.00% Castro::enforce_speed_limit() 62 2.168e-05 2.843e-05 3.436e-05 0.00% FabArrayBase::CPC::define() 2 2.08e-05 2.357e-05 3.101e-05 0.00% Amr::initSubcycle() 1 8.813e-06 1.082e-05 1.543e-05 0.00% Gravity::set_mass_offset() 10 9.099e-06 1.094e-05 1.393e-05 0.00% Gravity::swapTimeLevels() 10 9.631e-06 1.123e-05 1.264e-05 0.00% Castro::create_source_corrector() 10 7.576e-06 8.867e-06 1.078e-05 0.00% Castro::FluxRegCrseInit 10 7.243e-06 8.46e-06 9.648e-06 0.00% Castro::retry_advance_ctu() 10 4.283e-06 4.858e-06 5.588e-06 0.00% Castro::FluxRegFineAdd() 10 1.872e-06 2.33e-06 2.772e-06 0.00% DistributionMapping::Distribute() 1 9.56e-07 1.135e-06 1.416e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-29-g76d6d344e12d) finalized