MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-30-g07f87b0a9047) initialized Starting run at 19:40:01 UTC on 2023-05-30. Successfully read inputs file ... Castro git describe: 23.05-33-gf0647a658 AMReX git describe: 23.05-30-g07f87b0a9 Microphysics git describe: 23.05-13-gbf803460 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018651912 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.377717141 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.376403848 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33012835 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331523544 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360983057 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334623294 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31357834 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312499186 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31333699 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311687399 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010411181 seconds Ending run at 19:40:04 UTC on 2023-05-30. Run time = 3.638147701 Run time without initialization = 3.379719225 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.638 ... 3.638 ... 3.638 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2944 2.3497 2.3976 65.90% Gravity::make_radial_gravity() 21 0.3349 0.3458 0.3591 9.87% Castro::do_advance_ctu() 10 0.06745 0.1138 0.1727 4.75% Castro::estTimeStep() 21 0.02264 0.1121 0.1715 4.71% Castro::initData() 1 0.03874 0.09137 0.1655 4.55% FabArray::ParallelCopy_finish() 41 0.03991 0.05349 0.08426 2.32% FabArray::setVal() 143 0.05781 0.06697 0.07787 2.14% amrex::Copy() 193 0.06228 0.07046 0.07741 2.13% Castro::reset_internal_energy(Fab) 1008 0.048 0.05069 0.05542 1.52% Castro::normalize_species() 62 0.04094 0.04234 0.04478 1.23% StateData::FillBoundary(geom) 41 0.03385 0.03675 0.04366 1.20% FabArray::ParallelCopy_nowait() 41 0.03733 0.04082 0.04187 1.15% FillPatchIterator::Initialize 41 0.02919 0.03343 0.03597 0.99% Gravity::interpolate_monopole_grav() 21 0.02814 0.02865 0.02962 0.81% Castro::construct_new_gravity_source() 10 0.02265 0.02494 0.02801 0.77% Castro::computeTemp() 63 0.01832 0.02037 0.02245 0.62% Castro::initialize_do_advance() 10 0.01202 0.01779 0.02089 0.57% VisMF::Write(FabArray) 2 0.01388 0.01504 0.01947 0.54% FabArray::Saxpy() 20 0.01239 0.01378 0.01464 0.40% Castro::initialize_advance() 10 0.00411 0.01048 0.01447 0.40% Amr::writePlotFile() 2 0.007445 0.01209 0.01396 0.38% MultiFab::contains_nan() 20 0.01123 0.01215 0.0137 0.38% FabArray::setDomainBndry() 41 0.008659 0.0108 0.01188 0.33% Castro::initMFs() 1 0.007092 0.008118 0.01104 0.30% Castro::construct_old_gravity_source() 10 0.007629 0.01021 0.01097 0.30% StateData::define() 4 0.005974 0.006697 0.008703 0.24% Castro::swap_state_time_levels() 10 0.00338 0.004975 0.006811 0.19% Castro::enforce_min_density() 62 0.005768 0.006104 0.006589 0.18% Castro::construct_new_source() 50 0.005652 0.006164 0.006497 0.18% main() 1 0.005664 0.005902 0.006079 0.17% Gravity::get_new_grav_vector() 11 0.003144 0.00368 0.004343 0.12% Amr::coarseTimeStep() 10 0.001648 0.002892 0.004009 0.11% Gravity::get_old_grav_vector() 10 0.00175 0.002321 0.00275 0.08% Castro::buildMetrics() 1 0.001669 0.001876 0.002453 0.07% Castro::finalize_do_advance() 10 0.0006254 0.001715 0.002125 0.06% Castro::expand_state() 10 0.0005907 0.0008747 0.001007 0.03% Amr::InitAmr() 1 0.0002783 0.0003874 0.0006214 0.02% DistributionMapping::LeastUsedCPUs() 1 8.01e-06 0.0003293 0.0004687 0.01% Amr::timeStep() 10 0.000165 0.0002411 0.0004404 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002885 0.0003065 0.0003424 0.01% Castro::clean_state() 62 0.0001353 0.0001543 0.0001723 0.00% Castro::enforce_consistent_e() 1 7.78e-05 0.0001026 0.0001643 0.00% StateDataPhysBCFunct::() 41 7.592e-05 9.531e-05 0.0001346 0.00% Castro::finalize_advance() 10 9.821e-05 0.0001098 0.0001222 0.00% Castro::construct_old_source() 50 4.508e-05 6.767e-05 0.0001046 0.00% Castro::Castro() 1 5.877e-05 7.338e-05 8.84e-05 0.00% FillPatchSingleLevel 41 6.265e-05 7.087e-05 7.715e-05 0.00% FabArray::ParallelCopy() 41 6.712e-05 6.986e-05 7.684e-05 0.00% Castro::do_new_sources() 10 5.097e-05 6.158e-05 7.555e-05 0.00% Amr::FinalizeInit() 1 4.002e-06 1.456e-05 7.269e-05 0.00% FabArrayBase::getCPC() 41 3.655e-05 5.182e-05 6.682e-05 0.00% Castro::do_old_sources() 10 4.524e-05 5.798e-05 6.666e-05 0.00% Amr::writeSmallPlotFile() 1 2.627e-05 5.18e-05 6.576e-05 0.00% Castro::construct_new_gravity() 10 3.41e-05 4.011e-05 5.69e-05 0.00% Castro::advance() 10 3.407e-05 4.39e-05 5.44e-05 0.00% Castro::apply_source_to_state() 20 3.481e-05 4.588e-05 5.401e-05 0.00% Castro::subcycle_advance_ctu() 10 4.069e-05 4.528e-05 5.056e-05 0.00% Castro::construct_old_gravity() 10 3.006e-05 3.801e-05 4.898e-05 0.00% Amr::defBaseLevel() 1 2.77e-05 3.754e-05 4.892e-05 0.00% Castro::enforce_speed_limit() 62 2.626e-05 3.171e-05 3.817e-05 0.00% Amr::initSubcycle() 1 9.39e-06 1.415e-05 3.17e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.268e-05 1.899e-05 3.124e-05 0.00% FabArrayBase::CPC::define() 2 2.144e-05 2.431e-05 2.783e-05 0.00% Castro::post_timestep() 10 1.314e-05 1.683e-05 2.665e-05 0.00% Castro::check_for_nan() 20 2.179e-05 2.374e-05 2.591e-05 0.00% Gravity::swapTimeLevels() 10 1.017e-05 1.337e-05 1.765e-05 0.00% Gravity::set_mass_offset() 10 9.103e-06 1.055e-05 1.21e-05 0.00% Castro::computeNewDt() 9 9.104e-06 1.048e-05 1.138e-05 0.00% Castro::FluxRegCrseInit 10 7.578e-06 9.08e-06 1.068e-05 0.00% Castro::create_source_corrector() 10 6.766e-06 8.57e-06 1.067e-05 0.00% Amr::initialInit() 1 1.321e-06 2.747e-06 1.027e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.733e-06 5.51e-06 9.543e-06 0.00% Castro::post_regrid() 1 2.621e-06 3.975e-06 8.092e-06 0.00% Castro::retry_advance_ctu() 10 4.995e-06 5.992e-06 6.941e-06 0.00% Castro::computeInitialDt() 2 3.655e-06 4.463e-06 5.616e-06 0.00% Amr::InitializeInit() 1 1.932e-06 3.078e-06 5.032e-06 0.00% Castro::post_init() 1 2.951e-06 3.784e-06 4.778e-06 0.00% Castro::FluxRegFineAdd() 10 1.863e-06 2.133e-06 2.654e-06 0.00% Amr::init() 1 1.761e-06 2.127e-06 2.328e-06 0.00% DistributionMapping::Distribute() 1 9.02e-07 1.263e-06 1.835e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.638 3.638 3.638 100.00% Amr::coarseTimeStep() 10 3.363 3.363 3.363 92.44% Amr::timeStep() 10 3.349 3.35 3.351 92.12% Castro::advance() 10 3.333 3.334 3.334 91.65% Castro::subcycle_advance_ctu() 10 3.248 3.259 3.272 89.94% Castro::do_advance_ctu() 10 3.248 3.259 3.272 89.94% Castro::construct_ctu_hydro_source() 10 2.294 2.35 2.398 65.90% Gravity::make_radial_gravity() 21 0.3498 0.3619 0.3727 10.24% Amr::init() 1 0.2575 0.2579 0.258 7.09% Gravity::get_new_grav_vector() 11 0.2347 0.2379 0.2402 6.60% Amr::initialInit() 1 0.2381 0.2389 0.2397 6.59% Castro::construct_old_gravity() 10 0.2003 0.2084 0.2168 5.96% Gravity::get_old_grav_vector() 10 0.1995 0.2077 0.2162 5.94% Castro::construct_new_gravity() 10 0.1968 0.1991 0.2005 5.51% Amr::InitializeInit() 1 0.06078 0.1152 0.1954 5.37% Amr::defBaseLevel() 1 0.06078 0.1152 0.1954 5.37% FillPatchIterator::Initialize 41 0.159 0.1756 0.1949 5.36% Amr::FinalizeInit() 1 0.04433 0.1237 0.1774 4.88% Castro::initialize_do_advance() 10 0.1573 0.1696 0.1751 4.81% Castro::estTimeStep() 21 0.02264 0.1121 0.1715 4.71% Castro::initData() 1 0.04285 0.09575 0.1711 4.70% FillPatchSingleLevel 41 0.119 0.1314 0.1571 4.32% Castro::computeInitialDt() 2 0.003187 0.08347 0.1381 3.79% Castro::expand_state() 10 0.1084 0.1213 0.1335 3.67% Castro::clean_state() 62 0.1128 0.1189 0.1281 3.52% FabArray::ParallelCopy() 41 0.08194 0.09446 0.1218 3.35% FabArray::ParallelCopy_finish() 41 0.03991 0.05349 0.08426 2.32% Castro::initialize_advance() 10 0.05705 0.07098 0.08193 2.25% Castro::computeTemp() 63 0.06661 0.07137 0.07822 2.15% FabArray::setVal() 143 0.05781 0.06697 0.07787 2.14% amrex::Copy() 193 0.06228 0.07046 0.07741 2.13% Castro::do_new_sources() 10 0.05925 0.06489 0.07405 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04829 0.051 0.05577 1.53% Castro::reset_internal_energy(Fab) 1008 0.048 0.05069 0.05542 1.52% Castro::do_old_sources() 10 0.04068 0.04493 0.04669 1.28% Castro::normalize_species() 62 0.04094 0.04234 0.04478 1.23% StateDataPhysBCFunct::() 41 0.03393 0.03684 0.04373 1.20% StateData::FillBoundary(geom) 41 0.03385 0.03675 0.04366 1.20% FabArray::ParallelCopy_nowait() 41 0.03742 0.0409 0.04196 1.15% Castro::post_init() 1 0.03896 0.03987 0.04081 1.12% Castro::construct_new_source() 50 0.02883 0.0311 0.03449 0.95% Amr::writePlotFile() 2 0.02855 0.02947 0.03037 0.83% Gravity::interpolate_monopole_grav() 21 0.02814 0.02865 0.02962 0.81% Castro::construct_new_gravity_source() 10 0.02265 0.02494 0.02801 0.77% VisMF::Write(FabArray) 2 0.01388 0.01504 0.01947 0.54% Castro::post_timestep() 10 0.01534 0.01611 0.01701 0.47% Castro::Castro() 1 0.01126 0.01236 0.0153 0.42% Castro::apply_source_to_state() 20 0.01242 0.01382 0.01469 0.40% FabArray::Saxpy() 20 0.01239 0.01378 0.01464 0.40% Castro::check_for_nan() 20 0.01125 0.01217 0.01372 0.38% MultiFab::contains_nan() 20 0.01123 0.01215 0.0137 0.38% FabArray::setDomainBndry() 41 0.008659 0.0108 0.01188 0.33% Castro::construct_old_source() 50 0.007674 0.01028 0.01105 0.30% Castro::initMFs() 1 0.007092 0.008118 0.01104 0.30% Castro::construct_old_gravity_source() 10 0.007629 0.01021 0.01097 0.30% AmrLevel::AmrLevel(dm) 1 0.005988 0.006716 0.008734 0.24% StateData::define() 4 0.005974 0.006697 0.008703 0.24% Castro::computeNewDt() 9 0.008583 0.008592 0.008598 0.24% Castro::swap_state_time_levels() 10 0.00338 0.004975 0.006811 0.19% Castro::enforce_min_density() 62 0.005768 0.006104 0.006589 0.18% Castro::finalize_advance() 10 0.002977 0.00351 0.004157 0.11% Castro::post_regrid() 1 0.001552 0.001981 0.002934 0.08% Castro::buildMetrics() 1 0.001787 0.002018 0.002666 0.07% Castro::finalize_do_advance() 10 0.0006254 0.001715 0.002125 0.06% Amr::InitAmr() 1 0.0002884 0.0004015 0.0006531 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.59e-05 0.0003361 0.0004778 0.01% DistributionMapping::LeastUsedCPUs() 1 8.01e-06 0.0003293 0.0004687 0.01% Castro::enforce_consistent_e() 1 7.78e-05 0.0001026 0.0001643 0.00% FabArrayBase::getCPC() 41 5.841e-05 7.612e-05 9.465e-05 0.00% Amr::writeSmallPlotFile() 1 2.627e-05 5.18e-05 6.576e-05 0.00% Castro::enforce_speed_limit() 62 2.626e-05 3.171e-05 3.817e-05 0.00% Amr::initSubcycle() 1 9.39e-06 1.415e-05 3.17e-05 0.00% FabArrayBase::CPC::define() 2 2.144e-05 2.431e-05 2.783e-05 0.00% Gravity::swapTimeLevels() 10 1.017e-05 1.337e-05 1.765e-05 0.00% Gravity::set_mass_offset() 10 9.103e-06 1.055e-05 1.21e-05 0.00% Castro::FluxRegCrseInit 10 7.578e-06 9.08e-06 1.068e-05 0.00% Castro::create_source_corrector() 10 6.766e-06 8.57e-06 1.067e-05 0.00% Castro::retry_advance_ctu() 10 4.995e-06 5.992e-06 6.941e-06 0.00% Castro::FluxRegFineAdd() 10 1.863e-06 2.133e-06 2.654e-06 0.00% DistributionMapping::Distribute() 1 9.02e-07 1.263e-06 1.835e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-30-g07f87b0a9047) finalized