MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-30-g07f87b0a9047) initialized Starting run at 05:26:29 UTC on 2023-05-30. Successfully read inputs file ... Castro git describe: 23.05-30-g283f15d69 AMReX git describe: 23.05-30-g07f87b0a9 Microphysics git describe: 23.05-13-gbf803460 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016200433 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358408156 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34766713 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333416037 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333438334 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.343892537 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.36655293 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314091342 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312038736 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312107876 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312274578 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010413679 seconds Ending run at 05:26:33 UTC on 2023-05-30. Run time = 3.553380875 Run time without initialization = 3.351731042 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.553 ... 3.553 ... 3.553 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2804 2.3618 2.3882 67.21% Gravity::make_radial_gravity() 21 0.3151 0.3311 0.3477 9.78% Castro::do_advance_ctu() 10 0.02052 0.04583 0.1327 3.73% Castro::estTimeStep() 21 0.03708 0.08195 0.1289 3.63% Castro::initData() 1 0.03887 0.07941 0.1289 3.63% FabArray::setVal() 143 0.06365 0.07542 0.0909 2.56% FabArray::ParallelCopy_finish() 41 0.03551 0.06437 0.0909 2.56% amrex::Copy() 193 0.06507 0.07533 0.08756 2.46% Castro::reset_internal_energy(Fab) 1008 0.04811 0.05092 0.0553 1.56% Castro::normalize_species() 62 0.04121 0.04231 0.045 1.27% FabArray::ParallelCopy_nowait() 41 0.03593 0.04191 0.044 1.24% FillPatchIterator::Initialize 41 0.02909 0.03654 0.0432 1.22% StateData::FillBoundary(geom) 41 0.03314 0.03592 0.04099 1.15% Gravity::interpolate_monopole_grav() 21 0.02793 0.02834 0.02875 0.81% Castro::construct_new_gravity_source() 10 0.0218 0.02462 0.02594 0.73% Castro::initialize_do_advance() 10 0.01248 0.0198 0.02524 0.71% Castro::computeTemp() 63 0.01931 0.0203 0.02145 0.60% VisMF::Write(FabArray) 2 0.01385 0.01443 0.0171 0.48% Castro::initialize_advance() 10 0.008988 0.01161 0.01536 0.43% FabArray::Saxpy() 20 0.01229 0.01392 0.01483 0.42% FabArray::setDomainBndry() 41 0.008874 0.01181 0.01317 0.37% MultiFab::contains_nan() 20 0.01008 0.01114 0.01279 0.36% Castro::construct_old_gravity_source() 10 0.006997 0.0102 0.01102 0.31% Amr::writePlotFile() 2 0.006892 0.009886 0.01058 0.30% Castro::initMFs() 1 0.007044 0.007555 0.008776 0.25% Castro::construct_new_source() 50 0.005801 0.006512 0.007487 0.21% main() 1 0.006416 0.006576 0.006708 0.19% StateData::define() 4 0.005875 0.006109 0.006652 0.19% Castro::enforce_min_density() 62 0.005675 0.005937 0.006271 0.18% Amr::coarseTimeStep() 10 0.001779 0.004008 0.00603 0.17% Castro::swap_state_time_levels() 10 0.00337 0.004515 0.004784 0.13% Gravity::get_new_grav_vector() 11 0.003048 0.003768 0.004273 0.12% Gravity::get_old_grav_vector() 10 0.00172 0.002397 0.002834 0.08% Castro::finalize_do_advance() 10 0.0006135 0.002002 0.002566 0.07% Castro::buildMetrics() 1 0.00163 0.001722 0.001895 0.05% Castro::expand_state() 10 0.0006304 0.00101 0.001267 0.04% Amr::timeStep() 10 0.0002041 0.0002478 0.0004196 0.01% Amr::InitAmr() 1 0.0002628 0.0002908 0.000405 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002881 0.0003009 0.0003646 0.01% Castro::clean_state() 62 0.0001482 0.0001556 0.000172 0.00% DistributionMapping::LeastUsedCPUs() 1 7.101e-06 0.0001157 0.0001403 0.00% Castro::finalize_advance() 10 8.14e-05 0.0001054 0.0001272 0.00% Castro::do_new_sources() 10 4.996e-05 7.146e-05 0.0001094 0.00% StateDataPhysBCFunct::() 41 8.187e-05 9.076e-05 9.894e-05 0.00% Castro::enforce_consistent_e() 1 7.81e-05 8.486e-05 8.897e-05 0.00% FabArray::ParallelCopy() 41 6.752e-05 7.547e-05 8.077e-05 0.00% Castro::Castro() 1 5.988e-05 6.916e-05 7.892e-05 0.00% Castro::do_old_sources() 10 5.464e-05 6.437e-05 7.532e-05 0.00% Castro::construct_old_source() 50 4.871e-05 6.561e-05 7.491e-05 0.00% Amr::writeSmallPlotFile() 1 2.56e-05 5.097e-05 7.471e-05 0.00% FillPatchSingleLevel 41 6.689e-05 6.912e-05 7.41e-05 0.00% Amr::FinalizeInit() 1 4.067e-06 1.403e-05 7.355e-05 0.00% FabArrayBase::getCPC() 41 4.783e-05 5.511e-05 6.597e-05 0.00% Castro::subcycle_advance_ctu() 10 4.033e-05 4.718e-05 6.158e-05 0.00% Castro::apply_source_to_state() 20 4.262e-05 4.929e-05 5.663e-05 0.00% Castro::construct_new_gravity() 10 3.878e-05 4.565e-05 5.573e-05 0.00% Amr::defBaseLevel() 1 3.709e-05 4.485e-05 5.493e-05 0.00% Castro::advance() 10 3.714e-05 4.267e-05 5.274e-05 0.00% Castro::construct_old_gravity() 10 3.654e-05 4.068e-05 4.354e-05 0.00% FabArrayBase::CPC::define() 2 2.011e-05 2.519e-05 3.512e-05 0.00% Castro::enforce_speed_limit() 62 2.357e-05 2.6e-05 2.998e-05 0.00% Castro::check_for_nan() 20 2.221e-05 2.407e-05 2.627e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.205e-05 1.585e-05 2.354e-05 0.00% Gravity::set_mass_offset() 10 9.692e-06 1.434e-05 2.043e-05 0.00% Castro::FluxRegCrseInit 10 8.527e-06 1.38e-05 1.949e-05 0.00% Castro::post_timestep() 10 1.263e-05 1.359e-05 1.552e-05 0.00% Gravity::swapTimeLevels() 10 1.06e-05 1.226e-05 1.362e-05 0.00% Castro::computeNewDt() 9 8.165e-06 1.062e-05 1.248e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.821e-06 5.284e-06 1.053e-05 0.00% Amr::initSubcycle() 1 8.97e-06 9.579e-06 1.051e-05 0.00% Castro::create_source_corrector() 10 6.91e-06 8.56e-06 1.045e-05 0.00% Castro::retry_advance_ctu() 10 4.035e-06 5.675e-06 6.567e-06 0.00% Castro::computeInitialDt() 2 3.324e-06 4.298e-06 5.284e-06 0.00% Amr::InitializeInit() 1 1.968e-06 2.631e-06 4.718e-06 0.00% Castro::post_init() 1 2.864e-06 3.453e-06 4.411e-06 0.00% Castro::post_regrid() 1 1.906e-06 3.286e-06 4.143e-06 0.00% Castro::FluxRegFineAdd() 10 1.814e-06 2.34e-06 2.952e-06 0.00% Amr::init() 1 1.379e-06 2.145e-06 2.826e-06 0.00% Amr::initialInit() 1 1.2e-06 1.728e-06 2.588e-06 0.00% DistributionMapping::Distribute() 1 9.27e-07 1.013e-06 1.162e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.553 3.553 3.553 100.00% Amr::coarseTimeStep() 10 3.335 3.335 3.335 93.84% Amr::timeStep() 10 3.319 3.321 3.323 93.52% Castro::advance() 10 3.303 3.305 3.306 93.04% Castro::subcycle_advance_ctu() 10 3.212 3.223 3.231 90.92% Castro::do_advance_ctu() 10 3.212 3.223 3.231 90.92% Castro::construct_ctu_hydro_source() 10 2.28 2.362 2.388 67.21% Gravity::make_radial_gravity() 21 0.331 0.3482 0.3621 10.19% Gravity::get_new_grav_vector() 11 0.2279 0.2292 0.2301 6.47% Castro::construct_old_gravity() 10 0.1915 0.2052 0.2167 6.10% Gravity::get_old_grav_vector() 10 0.1902 0.2043 0.216 6.08% FillPatchIterator::Initialize 41 0.165 0.1909 0.2103 5.92% Amr::init() 1 0.2011 0.2012 0.2012 5.66% Castro::construct_new_gravity() 10 0.1987 0.1999 0.2008 5.65% Castro::initialize_do_advance() 10 0.165 0.1821 0.1965 5.53% Amr::initialInit() 1 0.1844 0.1846 0.1848 5.20% FillPatchSingleLevel 41 0.1123 0.1425 0.1605 4.52% Amr::InitializeInit() 1 0.0602 0.1012 0.1518 4.27% Amr::defBaseLevel() 1 0.0602 0.1012 0.1518 4.27% Castro::expand_state() 10 0.1101 0.1318 0.1484 4.18% Castro::initData() 1 0.04292 0.0833 0.1325 3.73% Castro::estTimeStep() 21 0.03708 0.08195 0.1289 3.63% FabArray::ParallelCopy() 41 0.0779 0.1064 0.127 3.57% Castro::clean_state() 62 0.115 0.119 0.1266 3.56% Amr::FinalizeInit() 1 0.03297 0.08335 0.1242 3.49% Castro::computeInitialDt() 2 0.002214 0.05279 0.09386 2.64% FabArray::setVal() 143 0.06365 0.07542 0.0909 2.56% FabArray::ParallelCopy_finish() 41 0.03551 0.06437 0.0909 2.56% Castro::initialize_advance() 10 0.06986 0.07729 0.08827 2.48% amrex::Copy() 193 0.06507 0.07533 0.08756 2.46% Castro::computeTemp() 63 0.06827 0.07151 0.07711 2.17% Castro::do_new_sources() 10 0.06156 0.06637 0.07588 2.14% Castro::reset_internal_energy(MultiFab) 63 0.04841 0.05122 0.05567 1.57% Castro::reset_internal_energy(Fab) 1008 0.04811 0.05092 0.0553 1.56% Castro::do_old_sources() 10 0.03956 0.04735 0.05197 1.46% Castro::normalize_species() 62 0.04121 0.04231 0.045 1.27% FabArray::ParallelCopy_nowait() 41 0.036 0.04199 0.04408 1.24% StateDataPhysBCFunct::() 41 0.03322 0.03601 0.04108 1.16% StateData::FillBoundary(geom) 41 0.03314 0.03592 0.04099 1.15% Castro::construct_new_source() 50 0.0276 0.03113 0.03245 0.91% Castro::post_init() 1 0.02993 0.03023 0.03043 0.86% Gravity::interpolate_monopole_grav() 21 0.02793 0.02834 0.02875 0.81% Amr::writePlotFile() 2 0.02682 0.02708 0.02734 0.77% Castro::construct_new_gravity_source() 10 0.0218 0.02462 0.02594 0.73% VisMF::Write(FabArray) 2 0.01385 0.01443 0.0171 0.48% Castro::post_timestep() 10 0.0155 0.01609 0.01697 0.48% Castro::apply_source_to_state() 20 0.01233 0.01397 0.01489 0.42% FabArray::Saxpy() 20 0.01229 0.01392 0.01483 0.42% FabArray::setDomainBndry() 41 0.008874 0.01181 0.01317 0.37% Castro::check_for_nan() 20 0.01011 0.01116 0.01282 0.36% MultiFab::contains_nan() 20 0.01008 0.01114 0.01279 0.36% Castro::Castro() 1 0.01112 0.01165 0.0125 0.35% Castro::construct_old_source() 50 0.007045 0.01026 0.01109 0.31% Castro::construct_old_gravity_source() 10 0.006997 0.0102 0.01102 0.31% Castro::initMFs() 1 0.007044 0.007555 0.008776 0.25% Castro::computeNewDt() 9 0.008381 0.008389 0.0084 0.24% AmrLevel::AmrLevel(dm) 1 0.005895 0.006125 0.006666 0.19% StateData::define() 4 0.005875 0.006109 0.006652 0.19% Castro::enforce_min_density() 62 0.005675 0.005937 0.006271 0.18% Castro::finalize_advance() 10 0.002925 0.00434 0.005927 0.17% Castro::swap_state_time_levels() 10 0.00337 0.004515 0.004784 0.13% Castro::finalize_do_advance() 10 0.0006135 0.002002 0.002566 0.07% Castro::buildMetrics() 1 0.001753 0.001858 0.002065 0.06% Castro::post_regrid() 1 0.001525 0.001585 0.001663 0.05% Amr::InitAmr() 1 0.0002723 0.0003003 0.0004141 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.191e-05 0.000122 0.000152 0.00% DistributionMapping::LeastUsedCPUs() 1 7.101e-06 0.0001157 0.0001403 0.00% FabArrayBase::getCPC() 41 7.061e-05 8.03e-05 9.134e-05 0.00% Castro::enforce_consistent_e() 1 7.81e-05 8.486e-05 8.897e-05 0.00% Amr::writeSmallPlotFile() 1 2.56e-05 5.097e-05 7.471e-05 0.00% FabArrayBase::CPC::define() 2 2.011e-05 2.519e-05 3.512e-05 0.00% Castro::enforce_speed_limit() 62 2.357e-05 2.6e-05 2.998e-05 0.00% Gravity::set_mass_offset() 10 9.692e-06 1.434e-05 2.043e-05 0.00% Castro::FluxRegCrseInit 10 8.527e-06 1.38e-05 1.949e-05 0.00% Gravity::swapTimeLevels() 10 1.06e-05 1.226e-05 1.362e-05 0.00% Amr::initSubcycle() 1 8.97e-06 9.579e-06 1.051e-05 0.00% Castro::create_source_corrector() 10 6.91e-06 8.56e-06 1.045e-05 0.00% Castro::retry_advance_ctu() 10 4.035e-06 5.675e-06 6.567e-06 0.00% Castro::FluxRegFineAdd() 10 1.814e-06 2.34e-06 2.952e-06 0.00% DistributionMapping::Distribute() 1 9.27e-07 1.013e-06 1.162e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-30-g07f87b0a9047) finalized