MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-30-g07f87b0a9047) initialized Starting run at 05:21:53 UTC on 2023-05-31. Successfully read inputs file ... Castro git describe: 23.05-30-g283f15d69 AMReX git describe: 23.05-30-g07f87b0a9 Microphysics git describe: 23.05-14-gf5b7933e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016316902 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.382788346 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.372227073 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.368042696 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332360894 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.371361378 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337522987 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314052544 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314170373 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313924201 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31496201 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010590973 seconds Ending run at 05:21:57 UTC on 2023-05-31. Run time = 3.645351199 Run time without initialization = 3.439371318 Average number of zones advanced per microsecond: 0.762 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.644 ... 3.645 ... 3.645 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3221 2.3776 2.4716 67.80% Gravity::make_radial_gravity() 21 0.336 0.3473 0.3664 10.05% Castro::do_advance_ctu() 10 0.03221 0.128 0.183 5.02% Castro::initData() 1 0.06533 0.08803 0.1308 3.59% Castro::estTimeStep() 21 0.02856 0.0743 0.1051 2.88% amrex::Copy() 193 0.05936 0.07328 0.08309 2.28% FabArray::setVal() 143 0.06134 0.06914 0.07981 2.19% FabArray::ParallelCopy_finish() 41 0.03809 0.0522 0.07767 2.13% Castro::reset_internal_energy(Fab) 1008 0.04857 0.05054 0.05307 1.46% Castro::normalize_species() 62 0.04094 0.0424 0.04463 1.22% FabArray::ParallelCopy_nowait() 41 0.03784 0.0422 0.04418 1.21% StateData::FillBoundary(geom) 41 0.03285 0.03588 0.04003 1.10% FillPatchIterator::Initialize 41 0.02945 0.03483 0.03716 1.02% Gravity::interpolate_monopole_grav() 21 0.0279 0.02845 0.02917 0.80% Castro::construct_new_gravity_source() 10 0.02264 0.02479 0.02797 0.77% Castro::computeTemp() 63 0.01938 0.02039 0.02139 0.59% Castro::initialize_do_advance() 10 0.01181 0.01794 0.01982 0.54% VisMF::Write(FabArray) 2 0.01394 0.01468 0.01776 0.49% FabArray::Saxpy() 20 0.0125 0.01416 0.01523 0.42% Castro::initialize_advance() 10 0.008937 0.01162 0.01496 0.41% FabArray::setDomainBndry() 41 0.00898 0.01185 0.01324 0.36% MultiFab::contains_nan() 20 0.01006 0.01108 0.0126 0.35% Castro::construct_old_gravity_source() 10 0.008403 0.01044 0.01115 0.31% Amr::writePlotFile() 2 0.007096 0.01011 0.01091 0.30% Castro::initMFs() 1 0.006898 0.008066 0.01032 0.28% StateData::define() 4 0.005733 0.006668 0.00843 0.23% main() 1 0.004872 0.005974 0.006701 0.18% Castro::construct_new_source() 50 0.005657 0.006238 0.006516 0.18% Castro::enforce_min_density() 62 0.005858 0.00611 0.006378 0.17% Castro::swap_state_time_levels() 10 0.002222 0.004496 0.005343 0.15% Gravity::get_new_grav_vector() 11 0.003273 0.003815 0.004259 0.12% Amr::coarseTimeStep() 10 0.001225 0.002836 0.003798 0.10% Gravity::get_old_grav_vector() 10 0.001614 0.002438 0.00292 0.08% Castro::buildMetrics() 1 0.001631 0.001896 0.00242 0.07% Castro::finalize_do_advance() 10 0.000679 0.001494 0.001792 0.05% Castro::expand_state() 10 0.0007129 0.0008106 0.0009494 0.03% Amr::InitAmr() 1 0.0002588 0.0003535 0.0006383 0.02% Amr::timeStep() 10 0.0001681 0.0002347 0.0004729 0.01% DistributionMapping::LeastUsedCPUs() 1 8.027e-06 0.0003444 0.0004576 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002769 0.0003005 0.0003497 0.01% Castro::clean_state() 62 0.0001546 0.000167 0.0001857 0.01% Castro::enforce_consistent_e() 1 7.86e-05 9.732e-05 0.000142 0.00% Castro::finalize_advance() 10 8.391e-05 0.0001047 0.0001389 0.00% StateDataPhysBCFunct::() 41 7.93e-05 9.442e-05 0.000131 0.00% Castro::Castro() 1 6.029e-05 6.738e-05 8.491e-05 0.00% FabArray::ParallelCopy() 41 7.008e-05 7.76e-05 8.429e-05 0.00% Castro::construct_old_source() 50 5.81e-05 6.868e-05 8.298e-05 0.00% Amr::FinalizeInit() 1 3.553e-06 1.412e-05 7.937e-05 0.00% FillPatchSingleLevel 41 6.65e-05 7.154e-05 7.828e-05 0.00% Castro::do_old_sources() 10 5.34e-05 6.66e-05 7.78e-05 0.00% FabArrayBase::getCPC() 41 4.635e-05 5.63e-05 7.474e-05 0.00% Castro::do_new_sources() 10 5.635e-05 6.319e-05 7.235e-05 0.00% Amr::writeSmallPlotFile() 1 2.893e-05 4.594e-05 6.02e-05 0.00% Castro::apply_source_to_state() 20 3.818e-05 4.819e-05 5.591e-05 0.00% Castro::subcycle_advance_ctu() 10 3.325e-05 4.304e-05 5.472e-05 0.00% Amr::defBaseLevel() 1 2.383e-05 3.626e-05 5.267e-05 0.00% Castro::construct_new_gravity() 10 3.629e-05 4.209e-05 5.222e-05 0.00% Castro::advance() 10 3.67e-05 4.131e-05 4.827e-05 0.00% Castro::construct_old_gravity() 10 3.702e-05 3.985e-05 4.275e-05 0.00% FabArrayBase::CPC::define() 2 1.962e-05 2.482e-05 3.183e-05 0.00% Castro::check_for_nan() 20 2.286e-05 2.46e-05 3.056e-05 0.00% Castro::enforce_speed_limit() 62 2.424e-05 2.56e-05 2.923e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.415e-05 1.793e-05 2.308e-05 0.00% Castro::post_timestep() 10 1.195e-05 1.387e-05 1.863e-05 0.00% Amr::initSubcycle() 1 8.857e-06 1.11e-05 1.511e-05 0.00% Gravity::swapTimeLevels() 10 1.062e-05 1.302e-05 1.434e-05 0.00% Gravity::set_mass_offset() 10 8.557e-06 1.046e-05 1.305e-05 0.00% Castro::create_source_corrector() 10 7.5e-06 9.352e-06 1.202e-05 0.00% Castro::computeNewDt() 9 8.191e-06 9.753e-06 1.063e-05 0.00% Castro::computeInitialDt() 2 2.871e-06 4.756e-06 1.036e-05 0.00% Castro::FluxRegCrseInit 10 6.766e-06 8.402e-06 9.809e-06 0.00% Amr::InitializeInit() 1 2.16e-06 3.091e-06 7.578e-06 0.00% Castro::retry_advance_ctu() 10 4.586e-06 5.458e-06 6.644e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.132e-06 4.593e-06 5.317e-06 0.00% Castro::post_init() 1 2.304e-06 3.62e-06 4.618e-06 0.00% Castro::post_regrid() 1 2.445e-06 3.169e-06 4.364e-06 0.00% Castro::FluxRegFineAdd() 10 1.83e-06 2.213e-06 2.86e-06 0.00% Amr::init() 1 1.93e-06 2.312e-06 2.789e-06 0.00% Amr::initialInit() 1 1.421e-06 1.802e-06 2.366e-06 0.00% DistributionMapping::Distribute() 1 9.6e-07 1.18e-06 1.495e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.644 3.645 3.645 100.00% Amr::coarseTimeStep() 10 3.422 3.422 3.422 93.88% Amr::timeStep() 10 3.409 3.41 3.411 93.57% Castro::advance() 10 3.393 3.393 3.394 93.11% Castro::subcycle_advance_ctu() 10 3.309 3.316 3.322 91.14% Castro::do_advance_ctu() 10 3.309 3.316 3.322 91.14% Castro::construct_ctu_hydro_source() 10 2.322 2.378 2.472 67.80% Gravity::make_radial_gravity() 21 0.3531 0.3641 0.3802 10.43% Gravity::get_new_grav_vector() 11 0.2347 0.2371 0.2393 6.56% Castro::construct_old_gravity() 10 0.2043 0.2117 0.2285 6.27% Gravity::get_old_grav_vector() 10 0.2035 0.211 0.228 6.25% Castro::construct_new_gravity() 10 0.204 0.206 0.2074 5.69% Amr::init() 1 0.2051 0.2055 0.2056 5.64% Amr::initialInit() 1 0.1882 0.1886 0.189 5.18% FillPatchIterator::Initialize 41 0.1648 0.1773 0.1871 5.13% Castro::initialize_do_advance() 10 0.1588 0.169 0.1765 4.84% Amr::InitializeInit() 1 0.08595 0.1111 0.1534 4.21% Amr::defBaseLevel() 1 0.08595 0.1111 0.1534 4.21% FillPatchSingleLevel 41 0.1168 0.1306 0.1487 4.08% Castro::initData() 1 0.06917 0.0922 0.1348 3.70% Castro::expand_state() 10 0.1093 0.1204 0.1285 3.52% Castro::clean_state() 62 0.1148 0.1188 0.125 3.43% FabArray::ParallelCopy() 41 0.08168 0.09456 0.1157 3.17% Castro::estTimeStep() 21 0.02856 0.0743 0.1051 2.88% Amr::FinalizeInit() 1 0.03554 0.07752 0.1027 2.82% amrex::Copy() 193 0.05936 0.07328 0.08309 2.28% Castro::initialize_advance() 10 0.06637 0.07339 0.08089 2.22% FabArray::setVal() 143 0.06134 0.06914 0.07981 2.19% FabArray::ParallelCopy_finish() 41 0.03809 0.0522 0.07767 2.13% Castro::computeTemp() 63 0.06822 0.07123 0.07475 2.05% Castro::do_new_sources() 10 0.06006 0.06547 0.07415 2.03% Castro::computeInitialDt() 2 0.002377 0.04466 0.06991 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04884 0.05084 0.05337 1.46% Castro::reset_internal_energy(Fab) 1008 0.04857 0.05054 0.05307 1.46% Castro::do_old_sources() 10 0.04272 0.04557 0.04774 1.31% Castro::normalize_species() 62 0.04094 0.0424 0.04463 1.22% FabArray::ParallelCopy_nowait() 41 0.03792 0.04228 0.04425 1.21% StateDataPhysBCFunct::() 41 0.03293 0.03597 0.04016 1.10% StateData::FillBoundary(geom) 41 0.03285 0.03588 0.04003 1.10% Castro::construct_new_source() 50 0.02888 0.03103 0.03431 0.94% Castro::post_init() 1 0.03091 0.03212 0.03257 0.89% Gravity::interpolate_monopole_grav() 21 0.0279 0.02845 0.02917 0.80% Castro::construct_new_gravity_source() 10 0.02264 0.02479 0.02797 0.77% Amr::writePlotFile() 2 0.02714 0.02751 0.02774 0.76% VisMF::Write(FabArray) 2 0.01394 0.01468 0.01776 0.49% Castro::post_timestep() 10 0.01569 0.01608 0.01687 0.46% Castro::apply_source_to_state() 20 0.01255 0.0142 0.01529 0.42% FabArray::Saxpy() 20 0.0125 0.01416 0.01523 0.42% Castro::Castro() 1 0.01038 0.01182 0.01455 0.40% FabArray::setDomainBndry() 41 0.00898 0.01185 0.01324 0.36% Castro::check_for_nan() 20 0.01008 0.01111 0.01263 0.35% MultiFab::contains_nan() 20 0.01006 0.01108 0.0126 0.35% Castro::construct_old_source() 50 0.008461 0.01051 0.01123 0.31% Castro::construct_old_gravity_source() 10 0.008403 0.01044 0.01115 0.31% Castro::initMFs() 1 0.006898 0.008066 0.01032 0.28% Castro::computeNewDt() 9 0.008616 0.008621 0.008629 0.24% AmrLevel::AmrLevel(dm) 1 0.005748 0.006686 0.008451 0.23% StateData::define() 4 0.005733 0.006668 0.00843 0.23% Castro::enforce_min_density() 62 0.005858 0.00611 0.006378 0.17% Castro::swap_state_time_levels() 10 0.002222 0.004496 0.005343 0.15% Castro::finalize_advance() 10 0.002923 0.003484 0.004071 0.11% Castro::post_regrid() 1 0.001533 0.00194 0.002923 0.08% Castro::buildMetrics() 1 0.001735 0.002044 0.002635 0.07% Castro::finalize_do_advance() 10 0.000679 0.001494 0.001792 0.05% Amr::InitAmr() 1 0.0002679 0.0003646 0.0006533 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.353e-05 0.0003502 0.0004642 0.01% DistributionMapping::LeastUsedCPUs() 1 8.027e-06 0.0003444 0.0004576 0.01% Castro::enforce_consistent_e() 1 7.86e-05 9.732e-05 0.000142 0.00% FabArrayBase::getCPC() 41 6.779e-05 8.112e-05 9.814e-05 0.00% Amr::writeSmallPlotFile() 1 2.893e-05 4.594e-05 6.02e-05 0.00% FabArrayBase::CPC::define() 2 1.962e-05 2.482e-05 3.183e-05 0.00% Castro::enforce_speed_limit() 62 2.424e-05 2.56e-05 2.923e-05 0.00% Amr::initSubcycle() 1 8.857e-06 1.11e-05 1.511e-05 0.00% Gravity::swapTimeLevels() 10 1.062e-05 1.302e-05 1.434e-05 0.00% Gravity::set_mass_offset() 10 8.557e-06 1.046e-05 1.305e-05 0.00% Castro::create_source_corrector() 10 7.5e-06 9.352e-06 1.202e-05 0.00% Castro::FluxRegCrseInit 10 6.766e-06 8.402e-06 9.809e-06 0.00% Castro::retry_advance_ctu() 10 4.586e-06 5.458e-06 6.644e-06 0.00% Castro::FluxRegFineAdd() 10 1.83e-06 2.213e-06 2.86e-06 0.00% DistributionMapping::Distribute() 1 9.6e-07 1.18e-06 1.495e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 45 B 117 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-30-g07f87b0a9047) finalized