MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (23.05-31-g2e1106e246c4) initialized
Starting run at 13:37:54 UTC on 2023-06-01.
Successfully read inputs file ...
Castro git describe: 23.05-31-g95ff25350
AMReX git describe: 23.05-31-g2e1106e24
Microphysics git describe: 23.06
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.01603824 seconds
[Level 0 step 1] ADVANCE with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
[STEP 1] Coarse TimeStep time: 0.387298795
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[Level 0 step 2] ADVANCE with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
[STEP 2] Coarse TimeStep time: 0.353024919
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[Level 0 step 3] ADVANCE with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
[STEP 3] Coarse TimeStep time: 0.363610212
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[Level 0 step 4] ADVANCE with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
[STEP 4] Coarse TimeStep time: 0.331609387
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[Level 0 step 5] ADVANCE with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
[STEP 5] Coarse TimeStep time: 0.36270724
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[Level 0 step 6] ADVANCE with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
[STEP 6] Coarse TimeStep time: 0.329874466
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[Level 0 step 7] ADVANCE with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
[STEP 7] Coarse TimeStep time: 0.31377127
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[Level 0 step 8] ADVANCE with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
[STEP 8] Coarse TimeStep time: 0.312059547
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[Level 0 step 9] ADVANCE with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
[STEP 9] Coarse TimeStep time: 0.313111712
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[Level 0 step 10] ADVANCE with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
[STEP 10] Coarse TimeStep time: 0.313264442
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.010482972 seconds
Ending run at 13:37:58 UTC on 2023-06-01.
Run time = 3.645805989
Run time without initialization = 3.398129474
Average number of zones advanced per microsecond: 0.771
Average number of zones advanced per microsecond per rank: 0.096
TinyProfiler total time across processes [min...avg...max]: 3.644 ... 3.645 ... 3.646
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.3276 2.3649 2.3973 65.75%
Gravity::make_radial_gravity() 21 0.3396 0.352 0.3644 10.00%
Castro::estTimeStep() 21 0.03372 0.109 0.1677 4.60%
Castro::initData() 1 0.03849 0.09028 0.1636 4.49%
Castro::do_advance_ctu() 10 0.07147 0.1055 0.1454 3.99%
amrex::Copy() 193 0.06303 0.07285 0.08322 2.28%
FabArray::setVal() 143 0.05894 0.06688 0.07845 2.15%
FabArray::ParallelCopy_finish() 41 0.03702 0.05383 0.07792 2.14%
Castro::reset_internal_energy(Fab) 1008 0.04892 0.05105 0.053 1.45%
Castro::normalize_species() 62 0.04098 0.0424 0.04361 1.20%
FabArray::ParallelCopy_nowait() 41 0.03719 0.04127 0.04274 1.17%
StateData::FillBoundary(geom) 41 0.03309 0.03628 0.04006 1.10%
FillPatchIterator::Initialize 41 0.02943 0.0341 0.0358 0.98%
Gravity::interpolate_monopole_grav() 21 0.02774 0.02852 0.02986 0.82%
Castro::construct_new_gravity_source() 10 0.02235 0.02448 0.0272 0.75%
Castro::computeTemp() 63 0.02004 0.02061 0.02114 0.58%
Castro::initialize_do_advance() 10 0.01249 0.0176 0.01956 0.54%
VisMF::Write(FabArray) 2 0.01387 0.01458 0.01722 0.47%
FabArray::Saxpy() 20 0.01298 0.01405 0.01487 0.41%
Castro::initialize_advance() 10 0.004109 0.01017 0.0139 0.38%
FabArray::setDomainBndry() 41 0.008852 0.01167 0.01289 0.35%
MultiFab::contains_nan() 20 0.01003 0.01109 0.01222 0.34%
Castro::construct_old_gravity_source() 10 0.00847 0.01011 0.01058 0.29%
Castro::initMFs() 1 0.006891 0.008007 0.01044 0.29%
Amr::writePlotFile() 2 0.0068 0.009477 0.01021 0.28%
StateData::define() 4 0.005758 0.006642 0.00844 0.23%
main() 1 0.005168 0.006089 0.006631 0.18%
Castro::enforce_min_density() 62 0.005729 0.006082 0.006386 0.18%
Castro::construct_new_source() 50 0.00555 0.006086 0.006283 0.17%
Castro::swap_state_time_levels() 10 0.003387 0.004562 0.004761 0.13%
Gravity::get_new_grav_vector() 11 0.002964 0.003768 0.004478 0.12%
Amr::coarseTimeStep() 10 0.001512 0.002186 0.003029 0.08%
Gravity::get_old_grav_vector() 10 0.001926 0.002398 0.002726 0.07%
Castro::buildMetrics() 1 0.001651 0.001926 0.002443 0.07%
Castro::finalize_do_advance() 10 0.000615 0.001489 0.001812 0.05%
Castro::expand_state() 10 0.0006836 0.0008476 0.001041 0.03%
Amr::InitAmr() 1 0.0002689 0.0003547 0.0004958 0.01%
Amr::timeStep() 10 0.0001771 0.0002483 0.0004747 0.01%
Castro::reset_internal_energy(MultiFab) 63 0.0002935 0.000315 0.0003362 0.01%
DistributionMapping::LeastUsedCPUs() 1 7.602e-06 0.0001862 0.0002704 0.01%
Castro::clean_state() 62 0.0001493 0.0001621 0.000179 0.00%
Castro::enforce_consistent_e() 1 7.953e-05 0.0001098 0.0001698 0.00%
StateDataPhysBCFunct::() 41 7.986e-05 9.667e-05 0.0001333 0.00%
Castro::finalize_advance() 10 7.819e-05 9.764e-05 0.0001075 0.00%
FabArray::ParallelCopy() 41 6.992e-05 8.024e-05 9.621e-05 0.00%
FabArrayBase::getCPC() 41 4.307e-05 5.81e-05 8.538e-05 0.00%
FillPatchSingleLevel 41 6.623e-05 7.204e-05 8.127e-05 0.00%
Castro::Castro() 1 5.153e-05 6.721e-05 7.659e-05 0.00%
Castro::construct_old_source() 50 5.378e-05 6.57e-05 7.621e-05 0.00%
Castro::subcycle_advance_ctu() 10 4.187e-05 5.027e-05 7.5e-05 0.00%
Amr::FinalizeInit() 1 3.936e-06 1.351e-05 7.187e-05 0.00%
Castro::do_new_sources() 10 5.353e-05 6.523e-05 7.17e-05 0.00%
Amr::writeSmallPlotFile() 1 2.506e-05 5.176e-05 7.129e-05 0.00%
Castro::do_old_sources() 10 5.656e-05 6.526e-05 7.007e-05 0.00%
Amr::defBaseLevel() 1 2.442e-05 3.623e-05 5.412e-05 0.00%
Castro::apply_source_to_state() 20 3.659e-05 4.639e-05 5.323e-05 0.00%
Castro::construct_new_gravity() 10 3.476e-05 4.451e-05 4.889e-05 0.00%
Castro::advance() 10 3.801e-05 4.359e-05 4.757e-05 0.00%
Castro::enforce_speed_limit() 62 2.401e-05 3.141e-05 4.709e-05 0.00%
Castro::construct_old_gravity() 10 3.552e-05 4.008e-05 4.354e-05 0.00%
FabArrayBase::CPC::define() 2 2.173e-05 2.524e-05 3.714e-05 0.00%
Castro::check_for_nan() 20 2.351e-05 2.653e-05 3.049e-05 0.00%
AmrLevel::AmrLevel(dm) 1 1.235e-05 1.791e-05 2.57e-05 0.00%
Amr::initSubcycle() 1 9.108e-06 1.141e-05 1.646e-05 0.00%
Castro::post_timestep() 10 1.309e-05 1.424e-05 1.519e-05 0.00%
Gravity::swapTimeLevels() 10 9.189e-06 1.227e-05 1.421e-05 0.00%
Gravity::set_mass_offset() 10 1e-05 1.211e-05 1.415e-05 0.00%
Castro::FluxRegCrseInit 10 8.418e-06 9.476e-06 1.287e-05 0.00%
Castro::computeNewDt() 9 8.611e-06 1.074e-05 1.196e-05 0.00%
Castro::create_source_corrector() 10 7.833e-06 8.705e-06 9.398e-06 0.00%
DistributionMapping::SFCProcessorMapDoIt() 1 3.709e-06 5.526e-06 8.618e-06 0.00%
Castro::retry_advance_ctu() 10 5.122e-06 5.853e-06 7.039e-06 0.00%
Castro::post_regrid() 1 2.648e-06 3.681e-06 6.559e-06 0.00%
Castro::post_init() 1 2.789e-06 3.627e-06 4.578e-06 0.00%
Amr::InitializeInit() 1 2.317e-06 2.983e-06 4.574e-06 0.00%
Castro::computeInitialDt() 2 3.323e-06 4.054e-06 4.503e-06 0.00%
Castro::FluxRegFineAdd() 10 1.915e-06 2.254e-06 3.043e-06 0.00%
Amr::init() 1 1.531e-06 2.157e-06 2.677e-06 0.00%
Amr::initialInit() 1 1.158e-06 1.874e-06 2.621e-06 0.00%
DistributionMapping::Distribute() 1 8.88e-07 1.153e-06 1.481e-06 0.00%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.644 3.645 3.646 100.00%
Amr::coarseTimeStep() 10 3.381 3.381 3.381 92.74%
Amr::timeStep() 10 3.368 3.369 3.37 92.43%
Castro::advance() 10 3.352 3.353 3.354 91.98%
Castro::subcycle_advance_ctu() 10 3.271 3.279 3.29 90.25%
Castro::do_advance_ctu() 10 3.271 3.279 3.29 90.25%
Castro::construct_ctu_hydro_source() 10 2.328 2.365 2.397 65.75%
Gravity::make_radial_gravity() 21 0.3559 0.3686 0.3817 10.47%
Amr::init() 1 0.247 0.2471 0.2472 6.78%
Castro::construct_old_gravity() 10 0.216 0.2249 0.2354 6.46%
Gravity::get_old_grav_vector() 10 0.2152 0.2242 0.2348 6.44%
Amr::initialInit() 1 0.2307 0.231 0.2314 6.35%
Gravity::get_new_grav_vector() 11 0.2273 0.2283 0.2301 6.31%
Castro::construct_new_gravity() 10 0.1938 0.1947 0.1957 5.37%
Amr::InitializeInit() 1 0.05922 0.1135 0.1926 5.28%
Amr::defBaseLevel() 1 0.05922 0.1135 0.1926 5.28%
FillPatchIterator::Initialize 41 0.1641 0.1775 0.1903 5.22%
Castro::initialize_do_advance() 10 0.1597 0.1679 0.1751 4.80%
Amr::FinalizeInit() 1 0.03806 0.1176 0.1717 4.71%
Castro::initData() 1 0.04246 0.09467 0.1694 4.65%
Castro::estTimeStep() 21 0.03372 0.109 0.1677 4.60%
FillPatchSingleLevel 41 0.116 0.1317 0.1517 4.16%
Castro::computeInitialDt() 2 0.002798 0.08213 0.1365 3.74%
Castro::expand_state() 10 0.1084 0.1191 0.1275 3.50%
Castro::clean_state() 62 0.1158 0.1195 0.1225 3.36%
FabArray::ParallelCopy() 41 0.07797 0.09526 0.1153 3.16%
amrex::Copy() 193 0.06303 0.07285 0.08322 2.28%
Castro::initialize_advance() 10 0.05837 0.0701 0.07847 2.15%
FabArray::setVal() 143 0.05894 0.06688 0.07845 2.15%
FabArray::ParallelCopy_finish() 41 0.03702 0.05383 0.07792 2.14%
Castro::computeTemp() 63 0.06946 0.07197 0.07427 2.04%
Castro::do_new_sources() 10 0.05928 0.06435 0.07246 1.99%
Castro::reset_internal_energy(MultiFab) 63 0.04922 0.05136 0.05331 1.46%
Castro::reset_internal_energy(Fab) 1008 0.04892 0.05105 0.053 1.45%
Castro::do_old_sources() 10 0.04427 0.04573 0.04788 1.31%
Castro::normalize_species() 62 0.04098 0.0424 0.04361 1.20%
FabArray::ParallelCopy_nowait() 41 0.03727 0.04135 0.04283 1.17%
StateDataPhysBCFunct::() 41 0.03318 0.03637 0.04016 1.10%
StateData::FillBoundary(geom) 41 0.03309 0.03628 0.04006 1.10%
Castro::post_init() 1 0.03364 0.03472 0.03532 0.97%
Castro::construct_new_source() 50 0.02851 0.03057 0.03346 0.92%
Gravity::interpolate_monopole_grav() 21 0.02774 0.02852 0.02986 0.82%
Castro::construct_new_gravity_source() 10 0.02235 0.02448 0.0272 0.75%
Amr::writePlotFile() 2 0.02641 0.02666 0.02686 0.74%
VisMF::Write(FabArray) 2 0.01387 0.01458 0.01722 0.47%
Castro::post_timestep() 10 0.01535 0.01596 0.01683 0.46%
Castro::apply_source_to_state() 20 0.01302 0.0141 0.01493 0.41%
FabArray::Saxpy() 20 0.01298 0.01405 0.01487 0.41%
Castro::Castro() 1 0.01061 0.01191 0.01473 0.40%
FabArray::setDomainBndry() 41 0.008852 0.01167 0.01289 0.35%
Castro::check_for_nan() 20 0.01006 0.01111 0.01224 0.34%
MultiFab::contains_nan() 20 0.01003 0.01109 0.01222 0.34%
Castro::construct_old_source() 50 0.00853 0.01018 0.01065 0.29%
Castro::construct_old_gravity_source() 10 0.00847 0.01011 0.01058 0.29%
Castro::initMFs() 1 0.006891 0.008007 0.01044 0.29%
Castro::computeNewDt() 9 0.00843 0.008479 0.008502 0.23%
AmrLevel::AmrLevel(dm) 1 0.005777 0.00666 0.008466 0.23%
StateData::define() 4 0.005758 0.006642 0.00844 0.23%
Castro::enforce_min_density() 62 0.005729 0.006082 0.006386 0.18%
Castro::swap_state_time_levels() 10 0.003387 0.004562 0.004761 0.13%
Castro::finalize_advance() 10 0.002906 0.003416 0.00402 0.11%
Castro::post_regrid() 1 0.001525 0.001963 0.002882 0.08%
Castro::buildMetrics() 1 0.001769 0.002078 0.002662 0.07%
Castro::finalize_do_advance() 10 0.000615 0.001489 0.001812 0.05%
Amr::InitAmr() 1 0.0002786 0.0003661 0.0005123 0.01%
DistributionMapping::SFCProcessorMapDoIt() 1 1.418e-05 0.0001929 0.0002795 0.01%
DistributionMapping::LeastUsedCPUs() 1 7.602e-06 0.0001862 0.0002704 0.01%
Castro::enforce_consistent_e() 1 7.953e-05 0.0001098 0.0001698 0.00%
FabArrayBase::getCPC() 41 6.69e-05 8.334e-05 0.0001225 0.00%
Amr::writeSmallPlotFile() 1 2.506e-05 5.176e-05 7.129e-05 0.00%
Castro::enforce_speed_limit() 62 2.401e-05 3.141e-05 4.709e-05 0.00%
FabArrayBase::CPC::define() 2 2.173e-05 2.524e-05 3.714e-05 0.00%
Amr::initSubcycle() 1 9.108e-06 1.141e-05 1.646e-05 0.00%
Gravity::swapTimeLevels() 10 9.189e-06 1.227e-05 1.421e-05 0.00%
Gravity::set_mass_offset() 10 1e-05 1.211e-05 1.415e-05 0.00%
Castro::FluxRegCrseInit 10 8.418e-06 9.476e-06 1.287e-05 0.00%
Castro::create_source_corrector() 10 7.833e-06 8.705e-06 9.398e-06 0.00%
Castro::retry_advance_ctu() 10 5.122e-06 5.853e-06 7.039e-06 0.00%
Castro::FluxRegFineAdd() 10 1.915e-06 2.254e-06 3.043e-06 0.00%
DistributionMapping::Distribute() 1 8.88e-07 1.153e-06 1.481e-06 0.00%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
Pinned Memory Usage:
---------------------------------------------------------------------------------------------------------------------
Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max
---------------------------------------------------------------------------------------------------------------------
The_Pinned_Arena::Initialize() 8 8 31 B 40 B 82 B 8192 KiB 8192 KiB 8192 KiB
---------------------------------------------------------------------------------------------------------------------
AMReX (23.05-31-g2e1106e246c4) finalized