MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-31-g2e1106e246c4) initialized Starting run at 05:23:13 UTC on 2023-06-01. Successfully read inputs file ... Castro git describe: 23.05-30-g283f15d69 AMReX git describe: 23.05-31-g2e1106e24 Microphysics git describe: 23.05-15-g2652c955 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016131718 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.356446979 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.402791515 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336744732 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330344876 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36423783 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334828611 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.30991383 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311043763 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311397763 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311381561 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01015366 seconds Ending run at 05:23:16 UTC on 2023-06-01. Run time = 3.594599989 Run time without initialization = 3.386690764 Average number of zones advanced per microsecond: 0.774 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.593 ... 3.594 ... 3.595 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3165 2.3599 2.4242 67.44% Gravity::make_radial_gravity() 21 0.3309 0.3416 0.3541 9.85% Castro::do_advance_ctu() 10 0.02268 0.08903 0.131 3.64% Castro::initData() 1 0.04019 0.08721 0.1305 3.63% Castro::estTimeStep() 21 0.03521 0.08622 0.1229 3.42% FabArray::ParallelCopy_finish() 41 0.03377 0.05248 0.0825 2.30% amrex::Copy() 193 0.06223 0.07349 0.08213 2.28% FabArray::setVal() 143 0.06066 0.06944 0.08122 2.26% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05085 0.05281 1.47% Castro::normalize_species() 62 0.04101 0.04224 0.04398 1.22% FabArray::ParallelCopy_nowait() 41 0.03724 0.04189 0.04367 1.21% StateData::FillBoundary(geom) 41 0.03397 0.03545 0.03747 1.04% FillPatchIterator::Initialize 41 0.02949 0.03466 0.0369 1.03% Castro::construct_new_gravity_source() 10 0.02249 0.02584 0.03224 0.90% Gravity::interpolate_monopole_grav() 21 0.02773 0.02823 0.02908 0.81% Castro::initialize_do_advance() 10 0.01208 0.0182 0.02138 0.59% Castro::computeTemp() 63 0.01895 0.02041 0.02104 0.59% VisMF::Write(FabArray) 2 0.01386 0.0144 0.01695 0.47% FabArray::Saxpy() 20 0.01208 0.01381 0.01459 0.41% Castro::initialize_advance() 10 0.004613 0.01034 0.0145 0.40% FabArray::setDomainBndry() 41 0.008772 0.01178 0.013 0.36% MultiFab::contains_nan() 20 0.01006 0.01094 0.01167 0.32% Castro::construct_old_gravity_source() 10 0.007848 0.01036 0.011 0.31% Castro::initMFs() 1 0.006827 0.008608 0.01037 0.29% Amr::writePlotFile() 2 0.00685 0.009304 0.01034 0.29% StateData::define() 4 0.005679 0.007033 0.008377 0.23% main() 1 0.005379 0.006153 0.006589 0.18% Castro::enforce_min_density() 62 0.005723 0.006099 0.006575 0.18% Castro::construct_new_source() 50 0.00585 0.00607 0.006307 0.18% Gravity::get_new_grav_vector() 11 0.003358 0.004253 0.005733 0.16% Amr::coarseTimeStep() 10 0.002007 0.003755 0.005048 0.14% Castro::swap_state_time_levels() 10 0.003348 0.004482 0.004727 0.13% Gravity::get_old_grav_vector() 10 0.001763 0.002467 0.002911 0.08% Castro::buildMetrics() 1 0.001623 0.002016 0.002407 0.07% Castro::finalize_do_advance() 10 0.0005489 0.001684 0.002153 0.06% Castro::expand_state() 10 0.0006326 0.001052 0.001195 0.03% Amr::InitAmr() 1 0.0002909 0.0004138 0.0005195 0.01% Amr::timeStep() 10 0.0001987 0.0002499 0.0004192 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002898 0.0003063 0.0003494 0.01% DistributionMapping::LeastUsedCPUs() 1 7.595e-06 0.0001297 0.0002779 0.01% Castro::clean_state() 62 0.000149 0.0001596 0.0001696 0.00% Castro::enforce_consistent_e() 1 7.485e-05 0.0001046 0.0001441 0.00% Castro::finalize_advance() 10 9.153e-05 0.0001058 0.0001258 0.00% StateDataPhysBCFunct::() 41 8.161e-05 9.609e-05 0.0001226 0.00% Amr::FinalizeInit() 1 3.565e-06 1.686e-05 0.0001007 0.00% FabArray::ParallelCopy() 41 6.404e-05 7.605e-05 8.822e-05 0.00% FillPatchSingleLevel 41 6.213e-05 7.335e-05 8.595e-05 0.00% Castro::Castro() 1 5.8e-05 7.17e-05 8.43e-05 0.00% Castro::construct_old_source() 50 5.03e-05 6.673e-05 7.818e-05 0.00% FabArrayBase::getCPC() 41 3.758e-05 6.021e-05 7.656e-05 0.00% Castro::do_new_sources() 10 5.382e-05 6.41e-05 7.634e-05 0.00% Castro::do_old_sources() 10 5.459e-05 6.356e-05 7.226e-05 0.00% Amr::writeSmallPlotFile() 1 2.548e-05 5.567e-05 6.632e-05 0.00% Castro::apply_source_to_state() 20 3.552e-05 4.659e-05 5.551e-05 0.00% Castro::advance() 10 3.586e-05 4.406e-05 5.478e-05 0.00% Castro::construct_old_gravity() 10 3.595e-05 4.087e-05 5.066e-05 0.00% Amr::defBaseLevel() 1 2.602e-05 3.76e-05 5.064e-05 0.00% Castro::construct_new_gravity() 10 3.487e-05 4.36e-05 4.994e-05 0.00% Castro::subcycle_advance_ctu() 10 3.967e-05 4.422e-05 4.925e-05 0.00% Castro::enforce_speed_limit() 62 2.17e-05 2.84e-05 3.67e-05 0.00% Castro::check_for_nan() 20 2.246e-05 2.488e-05 2.979e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.564e-05 2.239e-05 2.778e-05 0.00% FabArrayBase::CPC::define() 2 2.111e-05 2.308e-05 2.557e-05 0.00% Gravity::swapTimeLevels() 10 1.062e-05 1.357e-05 2.528e-05 0.00% Castro::post_timestep() 10 1.23e-05 1.487e-05 2.337e-05 0.00% Amr::initSubcycle() 1 8.979e-06 1.231e-05 1.646e-05 0.00% Gravity::set_mass_offset() 10 9.068e-06 1.139e-05 1.362e-05 0.00% Castro::computeNewDt() 9 1.001e-05 1.119e-05 1.318e-05 0.00% Castro::FluxRegCrseInit 10 8.266e-06 9.394e-06 1.154e-05 0.00% Castro::post_regrid() 1 1.698e-06 3.827e-06 1.105e-05 0.00% Castro::create_source_corrector() 10 6.273e-06 8.298e-06 1.059e-05 0.00% Castro::post_init() 1 2.662e-06 5.131e-06 9.824e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.811e-06 5.64e-06 7.253e-06 0.00% Castro::retry_advance_ctu() 10 5.004e-06 5.581e-06 6.115e-06 0.00% Castro::computeInitialDt() 2 3.266e-06 4.25e-06 5.255e-06 0.00% Amr::InitializeInit() 1 2.45e-06 3.038e-06 4.734e-06 0.00% Amr::init() 1 1.995e-06 2.486e-06 3.408e-06 0.00% Amr::initialInit() 1 1.524e-06 2.097e-06 2.94e-06 0.00% Castro::FluxRegFineAdd() 10 2.018e-06 2.277e-06 2.704e-06 0.00% DistributionMapping::Distribute() 1 9.16e-07 1.276e-06 1.737e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.593 3.594 3.595 100.00% Amr::coarseTimeStep() 10 3.37 3.37 3.37 93.75% Amr::timeStep() 10 3.355 3.356 3.358 93.41% Castro::advance() 10 3.339 3.339 3.34 92.93% Castro::subcycle_advance_ctu() 10 3.257 3.264 3.27 90.96% Castro::do_advance_ctu() 10 3.257 3.264 3.27 90.96% Castro::construct_ctu_hydro_source() 10 2.317 2.36 2.424 67.44% Gravity::make_radial_gravity() 21 0.3472 0.3583 0.3686 10.26% Gravity::get_new_grav_vector() 11 0.2366 0.2392 0.2411 6.71% Castro::construct_new_gravity() 10 0.2107 0.2119 0.213 5.93% Castro::construct_old_gravity() 10 0.1957 0.2038 0.2117 5.89% Gravity::get_old_grav_vector() 10 0.1949 0.2031 0.211 5.87% Amr::init() 1 0.2072 0.2073 0.2075 5.77% FillPatchIterator::Initialize 41 0.162 0.1766 0.1938 5.39% Amr::initialInit() 1 0.191 0.1912 0.1915 5.33% Castro::initialize_do_advance() 10 0.1607 0.1699 0.1784 4.96% Amr::InitializeInit() 1 0.06021 0.1116 0.1596 4.44% Amr::defBaseLevel() 1 0.0602 0.1116 0.1596 4.44% FillPatchSingleLevel 41 0.1128 0.1301 0.1554 4.32% Castro::initData() 1 0.04389 0.09158 0.1361 3.79% Amr::FinalizeInit() 1 0.03138 0.07964 0.1308 3.64% Castro::expand_state() 10 0.109 0.1214 0.1298 3.61% Castro::clean_state() 62 0.1145 0.1189 0.1235 3.44% Castro::estTimeStep() 21 0.03521 0.08622 0.1229 3.42% FabArray::ParallelCopy() 41 0.07624 0.09453 0.1199 3.34% Castro::computeInitialDt() 2 0.002305 0.05039 0.1018 2.83% FabArray::ParallelCopy_finish() 41 0.03377 0.05248 0.0825 2.30% amrex::Copy() 193 0.06223 0.07349 0.08213 2.28% FabArray::setVal() 143 0.06066 0.06944 0.08122 2.26% Castro::do_new_sources() 10 0.05858 0.06701 0.08067 2.24% Castro::initialize_advance() 10 0.06494 0.07145 0.07917 2.20% Castro::computeTemp() 63 0.06769 0.07156 0.07407 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04874 0.05115 0.05316 1.48% Castro::reset_internal_energy(Fab) 1008 0.04845 0.05085 0.05281 1.47% Castro::do_old_sources() 10 0.04038 0.04511 0.04639 1.29% Castro::normalize_species() 62 0.04101 0.04224 0.04398 1.22% FabArray::ParallelCopy_nowait() 41 0.03734 0.04198 0.04375 1.22% Castro::construct_new_source() 50 0.02864 0.03191 0.03855 1.07% StateDataPhysBCFunct::() 41 0.03409 0.03554 0.03757 1.05% StateData::FillBoundary(geom) 41 0.03397 0.03545 0.03747 1.04% Castro::construct_new_gravity_source() 10 0.02249 0.02584 0.03224 0.90% Gravity::interpolate_monopole_grav() 21 0.02773 0.02823 0.02908 0.81% Castro::post_init() 1 0.02753 0.02842 0.029 0.81% Amr::writePlotFile() 2 0.02621 0.02635 0.02655 0.74% Castro::post_timestep() 10 0.01545 0.01626 0.01754 0.49% VisMF::Write(FabArray) 2 0.01386 0.0144 0.01695 0.47% Castro::Castro() 1 0.01043 0.01279 0.01511 0.42% Castro::apply_source_to_state() 20 0.01213 0.01386 0.01464 0.41% FabArray::Saxpy() 20 0.01208 0.01381 0.01459 0.41% FabArray::setDomainBndry() 41 0.008772 0.01178 0.013 0.36% Castro::check_for_nan() 20 0.01008 0.01097 0.01169 0.33% MultiFab::contains_nan() 20 0.01006 0.01094 0.01167 0.32% Castro::construct_old_source() 50 0.007898 0.01043 0.01107 0.31% Castro::construct_old_gravity_source() 10 0.007848 0.01036 0.011 0.31% Castro::initMFs() 1 0.006827 0.008608 0.01037 0.29% Castro::computeNewDt() 9 0.009223 0.009229 0.009232 0.26% AmrLevel::AmrLevel(dm) 1 0.005703 0.007056 0.008398 0.23% StateData::define() 4 0.005679 0.007033 0.008377 0.23% Castro::enforce_min_density() 62 0.005723 0.006099 0.006575 0.18% Castro::swap_state_time_levels() 10 0.003348 0.004482 0.004727 0.13% Castro::finalize_advance() 10 0.002911 0.003499 0.004205 0.12% Castro::post_regrid() 1 0.001525 0.001959 0.002883 0.08% Castro::buildMetrics() 1 0.001732 0.002185 0.002642 0.07% Castro::finalize_do_advance() 10 0.0005489 0.001684 0.002153 0.06% Amr::InitAmr() 1 0.0003003 0.0004261 0.0005341 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.317e-05 0.0001366 0.0002863 0.01% DistributionMapping::LeastUsedCPUs() 1 7.595e-06 0.0001297 0.0002779 0.01% Castro::enforce_consistent_e() 1 7.485e-05 0.0001046 0.0001441 0.00% FabArrayBase::getCPC() 41 5.974e-05 8.33e-05 0.0001021 0.00% Amr::writeSmallPlotFile() 1 2.548e-05 5.567e-05 6.632e-05 0.00% Castro::enforce_speed_limit() 62 2.17e-05 2.84e-05 3.67e-05 0.00% FabArrayBase::CPC::define() 2 2.111e-05 2.308e-05 2.557e-05 0.00% Gravity::swapTimeLevels() 10 1.062e-05 1.357e-05 2.528e-05 0.00% Amr::initSubcycle() 1 8.979e-06 1.231e-05 1.646e-05 0.00% Gravity::set_mass_offset() 10 9.068e-06 1.139e-05 1.362e-05 0.00% Castro::FluxRegCrseInit 10 8.266e-06 9.394e-06 1.154e-05 0.00% Castro::create_source_corrector() 10 6.273e-06 8.298e-06 1.059e-05 0.00% Castro::retry_advance_ctu() 10 5.004e-06 5.581e-06 6.115e-06 0.00% Castro::FluxRegFineAdd() 10 2.018e-06 2.277e-06 2.704e-06 0.00% DistributionMapping::Distribute() 1 9.16e-07 1.276e-06 1.737e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 39 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-31-g2e1106e246c4) finalized