MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06) initialized Starting run at 05:23:32 UTC on 2023-06-02. Successfully read inputs file ... Castro git describe: 23.06 AMReX git describe: 23.06 Microphysics git describe: 23.06 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01730143 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.378813762 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.357473502 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.391744405 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.341936403 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368355502 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337070742 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.319907621 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.321284075 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.320933785 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.320677558 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011236498 seconds Ending run at 05:23:35 UTC on 2023-06-02. Run time = 3.676212877 Run time without initialization = 3.476707307 Average number of zones advanced per microsecond: 0.754 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.675 ... 3.676 ... 3.676 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2333 2.3780 2.4714 67.23% Gravity::make_radial_gravity() 21 0.3325 0.3481 0.3586 9.75% Castro::do_advance_ctu() 10 0.04983 0.1471 0.2942 8.00% Castro::estTimeStep() 21 0.03001 0.08505 0.1384 3.77% Castro::initData() 1 0.03845 0.08058 0.1294 3.52% amrex::Copy() 193 0.06555 0.07353 0.08446 2.30% FabArray::setVal() 143 0.06062 0.07001 0.0815 2.22% FabArray::ParallelCopy_finish() 41 0.03874 0.0519 0.05854 1.59% Castro::reset_internal_energy(Fab) 1008 0.04713 0.05059 0.05305 1.44% FabArray::ParallelCopy_nowait() 41 0.03743 0.04246 0.04517 1.23% Castro::normalize_species() 62 0.04147 0.04251 0.04408 1.20% StateData::FillBoundary(geom) 41 0.03353 0.03747 0.0425 1.16% FillPatchIterator::Initialize 41 0.03119 0.03543 0.03703 1.01% Castro::construct_new_gravity_source() 10 0.02255 0.02551 0.03149 0.86% Gravity::interpolate_monopole_grav() 21 0.028 0.02839 0.02945 0.80% Castro::computeTemp() 63 0.01781 0.02029 0.02127 0.58% Castro::initialize_do_advance() 10 0.01389 0.01836 0.02072 0.56% VisMF::Write(FabArray) 2 0.01406 0.01475 0.01802 0.49% Castro::initialize_advance() 10 0.009516 0.01233 0.01548 0.42% FabArray::Saxpy() 20 0.01202 0.01358 0.01436 0.39% FabArray::setDomainBndry() 41 0.009231 0.01172 0.01327 0.36% MultiFab::contains_nan() 20 0.01104 0.01197 0.01279 0.35% Amr::writePlotFile() 2 0.007768 0.01134 0.01219 0.33% Castro::construct_old_gravity_source() 10 0.007539 0.01017 0.01089 0.30% Castro::initMFs() 1 0.007132 0.008403 0.01079 0.29% StateData::define() 4 0.005861 0.006816 0.008576 0.23% Castro::construct_new_source() 50 0.005747 0.006127 0.006562 0.18% main() 1 0.005595 0.006177 0.006499 0.18% Castro::enforce_min_density() 62 0.005864 0.006044 0.006301 0.17% Castro::swap_state_time_levels() 10 0.00341 0.004729 0.00524 0.14% Amr::coarseTimeStep() 10 0.001463 0.003093 0.004739 0.13% Gravity::get_new_grav_vector() 11 0.003062 0.003695 0.004067 0.11% Gravity::get_old_grav_vector() 10 0.001757 0.002423 0.002836 0.08% Castro::buildMetrics() 1 0.001673 0.001945 0.002478 0.07% Castro::finalize_do_advance() 10 0.0006405 0.001714 0.00213 0.06% Castro::expand_state() 10 0.0007979 0.001165 0.001337 0.04% Amr::InitAmr() 1 0.0002624 0.0003543 0.0005033 0.01% Amr::timeStep() 10 0.0002008 0.0002553 0.0004283 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002755 0.0003008 0.0003457 0.01% DistributionMapping::LeastUsedCPUs() 1 6.445e-06 0.0001819 0.0002737 0.01% Castro::clean_state() 62 0.0001363 0.0001533 0.0001682 0.00% Castro::finalize_advance() 10 8.725e-05 0.0001098 0.0001325 0.00% StateDataPhysBCFunct::() 41 7.766e-05 9.361e-05 0.0001071 0.00% Castro::enforce_consistent_e() 1 7.86e-05 8.729e-05 0.0001039 0.00% FabArray::ParallelCopy() 41 6.474e-05 7.57e-05 8.738e-05 0.00% FillPatchSingleLevel 41 6.87e-05 7.634e-05 8.714e-05 0.00% Castro::do_new_sources() 10 4.717e-05 6.428e-05 8.407e-05 0.00% Castro::construct_old_source() 50 4.951e-05 6.666e-05 8.138e-05 0.00% Castro::Castro() 1 5.545e-05 6.406e-05 8.113e-05 0.00% FabArrayBase::getCPC() 41 3.449e-05 5.246e-05 7.779e-05 0.00% Amr::FinalizeInit() 1 4.289e-06 1.403e-05 7.208e-05 0.00% Castro::do_old_sources() 10 4.839e-05 6.221e-05 6.983e-05 0.00% Amr::writeSmallPlotFile() 1 2.552e-05 4.853e-05 6.554e-05 0.00% Castro::advance() 10 3.607e-05 4.735e-05 5.861e-05 0.00% Amr::defBaseLevel() 1 2.796e-05 3.941e-05 5.557e-05 0.00% Castro::subcycle_advance_ctu() 10 4.297e-05 4.986e-05 5.507e-05 0.00% Castro::apply_source_to_state() 20 3.387e-05 4.491e-05 5.218e-05 0.00% Castro::construct_new_gravity() 10 3.408e-05 4.491e-05 4.991e-05 0.00% Castro::construct_old_gravity() 10 3.304e-05 4.007e-05 4.497e-05 0.00% Castro::enforce_speed_limit() 62 2.413e-05 2.885e-05 3.59e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.239e-05 1.939e-05 3.076e-05 0.00% FabArrayBase::CPC::define() 2 1.958e-05 2.486e-05 2.753e-05 0.00% Castro::check_for_nan() 20 2.188e-05 2.377e-05 2.733e-05 0.00% Amr::initSubcycle() 1 9.009e-06 1.1e-05 1.55e-05 0.00% Gravity::swapTimeLevels() 10 8.991e-06 1.238e-05 1.493e-05 0.00% Castro::post_timestep() 10 1.157e-05 1.351e-05 1.483e-05 0.00% Gravity::set_mass_offset() 10 8.812e-06 1.163e-05 1.483e-05 0.00% Castro::computeNewDt() 9 8.934e-06 1.017e-05 1.174e-05 0.00% Castro::create_source_corrector() 10 7.657e-06 9.499e-06 1.141e-05 0.00% Castro::FluxRegCrseInit 10 5.825e-06 8.512e-06 1.064e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.278e-06 5.759e-06 9.018e-06 0.00% Castro::retry_advance_ctu() 10 5.161e-06 5.804e-06 6.992e-06 0.00% Amr::InitializeInit() 1 2.087e-06 3.025e-06 6.622e-06 0.00% Castro::computeInitialDt() 2 3.456e-06 4.325e-06 5.002e-06 0.00% Castro::post_regrid() 1 1.95e-06 3.307e-06 4.741e-06 0.00% Castro::post_init() 1 2.592e-06 3.547e-06 4.264e-06 0.00% Amr::init() 1 2.422e-06 2.706e-06 3.058e-06 0.00% Castro::FluxRegFineAdd() 10 1.783e-06 2.159e-06 2.364e-06 0.00% Amr::initialInit() 1 1.392e-06 1.859e-06 2.29e-06 0.00% DistributionMapping::Distribute() 1 9.35e-07 1.336e-06 1.846e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.675 3.676 3.676 100.00% Amr::coarseTimeStep() 10 3.459 3.459 3.459 94.09% Amr::timeStep() 10 3.444 3.446 3.447 93.77% Castro::advance() 10 3.428 3.429 3.43 93.29% Castro::subcycle_advance_ctu() 10 3.341 3.35 3.357 91.32% Castro::do_advance_ctu() 10 3.341 3.35 3.357 91.32% Castro::construct_ctu_hydro_source() 10 2.233 2.378 2.471 67.23% Gravity::make_radial_gravity() 21 0.3499 0.3657 0.3764 10.24% Gravity::get_new_grav_vector() 11 0.2312 0.2326 0.2335 6.35% Castro::construct_old_gravity() 10 0.2058 0.2181 0.2266 6.16% Gravity::get_old_grav_vector() 10 0.205 0.2173 0.2259 6.15% Castro::construct_new_gravity() 10 0.2061 0.2071 0.2076 5.65% Amr::init() 1 0.1988 0.199 0.1991 5.41% FillPatchIterator::Initialize 41 0.166 0.1793 0.1946 5.29% Castro::initialize_do_advance() 10 0.1584 0.1713 0.1826 4.97% Amr::initialInit() 1 0.1808 0.1812 0.1814 4.93% Amr::InitializeInit() 1 0.05919 0.1036 0.1521 4.14% Amr::defBaseLevel() 1 0.05919 0.1036 0.1521 4.14% FillPatchSingleLevel 41 0.1174 0.1321 0.1454 3.95% Castro::estTimeStep() 21 0.03001 0.08505 0.1384 3.77% Castro::expand_state() 10 0.1112 0.1218 0.1332 3.62% Castro::initData() 1 0.04219 0.08433 0.1331 3.62% Castro::clean_state() 62 0.1122 0.119 0.1223 3.33% Amr::FinalizeInit() 1 0.0293 0.07762 0.1221 3.32% FabArray::ParallelCopy() 41 0.08369 0.09451 0.1027 2.79% Castro::computeInitialDt() 2 0.002207 0.05062 0.09512 2.59% amrex::Copy() 193 0.06555 0.07353 0.08446 2.30% Castro::initialize_advance() 10 0.06813 0.07563 0.08302 2.26% FabArray::setVal() 143 0.06062 0.07001 0.0815 2.22% Castro::do_new_sources() 10 0.05779 0.06558 0.07676 2.09% Castro::computeTemp() 63 0.06522 0.07118 0.07464 2.03% FabArray::ParallelCopy_finish() 41 0.03874 0.0519 0.05854 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04741 0.05089 0.05337 1.45% Castro::reset_internal_energy(Fab) 1008 0.04713 0.05059 0.05305 1.44% Castro::do_old_sources() 10 0.04208 0.04508 0.04748 1.29% FabArray::ParallelCopy_nowait() 41 0.03754 0.04253 0.04524 1.23% Castro::normalize_species() 62 0.04147 0.04251 0.04408 1.20% StateDataPhysBCFunct::() 41 0.03362 0.03756 0.0426 1.16% StateData::FillBoundary(geom) 41 0.03353 0.03747 0.0425 1.16% Castro::construct_new_source() 50 0.02863 0.03164 0.03764 1.02% Castro::construct_new_gravity_source() 10 0.02255 0.02551 0.03149 0.86% Gravity::interpolate_monopole_grav() 21 0.028 0.02839 0.02945 0.80% Amr::writePlotFile() 2 0.0288 0.02908 0.02934 0.80% Castro::post_init() 1 0.02635 0.02663 0.02683 0.73% VisMF::Write(FabArray) 2 0.01406 0.01475 0.01802 0.49% Castro::post_timestep() 10 0.0151 0.01629 0.01719 0.47% Castro::Castro() 1 0.01079 0.01219 0.01513 0.41% Castro::apply_source_to_state() 20 0.01207 0.01362 0.01441 0.39% FabArray::Saxpy() 20 0.01202 0.01358 0.01436 0.39% FabArray::setDomainBndry() 41 0.009231 0.01172 0.01327 0.36% Castro::check_for_nan() 20 0.01106 0.01199 0.01282 0.35% MultiFab::contains_nan() 20 0.01104 0.01197 0.01279 0.35% Castro::construct_old_source() 50 0.007596 0.01023 0.01097 0.30% Castro::construct_old_gravity_source() 10 0.007539 0.01017 0.01089 0.30% Castro::initMFs() 1 0.007132 0.008403 0.01079 0.29% Castro::computeNewDt() 9 0.009177 0.009186 0.009199 0.25% AmrLevel::AmrLevel(dm) 1 0.005874 0.006835 0.008595 0.23% StateData::define() 4 0.005861 0.006816 0.008576 0.23% Castro::enforce_min_density() 62 0.005864 0.006044 0.006301 0.17% Castro::swap_state_time_levels() 10 0.00341 0.004729 0.00524 0.14% Castro::finalize_advance() 10 0.002967 0.003475 0.004159 0.11% Castro::buildMetrics() 1 0.001812 0.002111 0.002711 0.07% Castro::finalize_do_advance() 10 0.0006405 0.001714 0.00213 0.06% Castro::post_regrid() 1 0.001528 0.001613 0.001653 0.04% Amr::InitAmr() 1 0.0002718 0.0003653 0.0005177 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.216e-05 0.000189 0.0002829 0.01% DistributionMapping::LeastUsedCPUs() 1 6.445e-06 0.0001819 0.0002737 0.01% Castro::enforce_consistent_e() 1 7.86e-05 8.729e-05 0.0001039 0.00% FabArrayBase::getCPC() 41 6.125e-05 7.732e-05 0.0001029 0.00% Amr::writeSmallPlotFile() 1 2.552e-05 4.853e-05 6.554e-05 0.00% Castro::enforce_speed_limit() 62 2.413e-05 2.885e-05 3.59e-05 0.00% FabArrayBase::CPC::define() 2 1.958e-05 2.486e-05 2.753e-05 0.00% Amr::initSubcycle() 1 9.009e-06 1.1e-05 1.55e-05 0.00% Gravity::swapTimeLevels() 10 8.991e-06 1.238e-05 1.493e-05 0.00% Gravity::set_mass_offset() 10 8.812e-06 1.163e-05 1.483e-05 0.00% Castro::create_source_corrector() 10 7.657e-06 9.499e-06 1.141e-05 0.00% Castro::FluxRegCrseInit 10 5.825e-06 8.512e-06 1.064e-05 0.00% Castro::retry_advance_ctu() 10 5.161e-06 5.804e-06 6.992e-06 0.00% Castro::FluxRegFineAdd() 10 1.783e-06 2.159e-06 2.364e-06 0.00% DistributionMapping::Distribute() 1 9.35e-07 1.336e-06 1.846e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06) finalized