MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-1-g08326158c80e) initialized Starting run at 18:40:41 UTC on 2023-06-04. Successfully read inputs file ... Castro git describe: 23.06-10-gcab86d3df AMReX git describe: 23.06-1-g08326158c Microphysics git describe: 23.06-2-g726fe1e2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017161758 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363842778 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355158409 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.34128806 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340162139 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.411309601 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347439785 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31303735 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31362754 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314582027 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314390965 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010135871 seconds Ending run at 18:40:45 UTC on 2023-06-04. Run time = 3.613984479 Run time without initialization = 3.432540738 Average number of zones advanced per microsecond: 0.764 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.613 ... 3.613 ... 3.614 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3513 2.3950 2.4108 66.71% Gravity::make_radial_gravity() 21 0.3164 0.3323 0.353 9.77% check_for_negative_density() 10 0.08595 0.1041 0.1485 4.11% Castro::initData() 1 0.04033 0.07828 0.1131 3.13% Castro::estTimeStep() 21 0.0222 0.06746 0.1016 2.81% FabArray::setVal() 143 0.06471 0.0747 0.08884 2.46% amrex::Copy() 193 0.06166 0.0743 0.08209 2.27% FabArray::ParallelCopy_finish() 41 0.03922 0.05473 0.07576 2.10% Castro::reset_internal_energy(Fab) 1008 0.04888 0.05051 0.05426 1.50% FabArray::ParallelCopy_nowait() 41 0.03512 0.0421 0.04453 1.23% Castro::normalize_species() 62 0.04124 0.04216 0.04376 1.21% StateData::FillBoundary(geom) 41 0.03411 0.03581 0.03787 1.05% FillPatchIterator::Initialize 41 0.02941 0.0346 0.03703 1.02% Castro::construct_new_gravity_source() 10 0.02226 0.02518 0.02924 0.81% Gravity::interpolate_monopole_grav() 21 0.02826 0.02843 0.02872 0.79% Castro::initialize_do_advance() 10 0.01226 0.01842 0.0237 0.66% Castro::computeTemp() 63 0.0182 0.01986 0.02093 0.58% VisMF::Write(FabArray) 2 0.01364 0.01426 0.01772 0.49% Castro::initialize_advance() 10 0.00979 0.01241 0.01565 0.43% FabArray::Saxpy() 20 0.01208 0.01363 0.01465 0.41% FabArray::setDomainBndry() 41 0.008663 0.01171 0.01327 0.37% MultiFab::contains_nan() 20 0.009768 0.0108 0.01183 0.33% Amr::writePlotFile() 2 0.006937 0.01029 0.01104 0.31% Castro::construct_old_gravity_source() 10 0.007087 0.01007 0.0109 0.30% Castro::initMFs() 1 0.006962 0.007272 0.009235 0.26% main() 1 0.005454 0.006325 0.006947 0.19% StateData::define() 4 0.005727 0.005867 0.006588 0.18% Castro::enforce_min_density() 62 0.005675 0.006033 0.006531 0.18% Castro::construct_new_source() 50 0.005466 0.006125 0.006331 0.18% Gravity::get_new_grav_vector() 11 0.002864 0.004238 0.006199 0.17% Castro::swap_state_time_levels() 10 0.003398 0.004579 0.004816 0.13% Amr::coarseTimeStep() 10 0.001047 0.002407 0.003396 0.09% Gravity::get_old_grav_vector() 10 0.001709 0.0025 0.002873 0.08% Castro::buildMetrics() 1 0.001624 0.001674 0.001906 0.05% Castro::finalize_do_advance() 10 0.0006689 0.001512 0.001882 0.05% Castro::expand_state() 10 0.0007945 0.001052 0.001219 0.03% Amr::timeStep() 10 0.0001749 0.0002466 0.0005011 0.01% Amr::InitAmr() 1 0.0002749 0.0003077 0.0004344 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002953 0.0003064 0.0003195 0.01% Castro::do_advance_ctu() 10 0.0002064 0.0002536 0.0003073 0.01% Castro::clean_state() 62 0.0001348 0.0001813 0.0002069 0.01% DistributionMapping::LeastUsedCPUs() 1 7.85e-06 0.0001257 0.0001578 0.00% StateDataPhysBCFunct::() 41 8.93e-05 0.0001074 0.0001303 0.00% Castro::finalize_advance() 10 9.452e-05 0.0001076 0.000125 0.00% Castro::enforce_consistent_e() 1 7.968e-05 9.138e-05 0.0001085 0.00% Castro::Castro() 1 5.797e-05 7.526e-05 9.941e-05 0.00% Amr::FinalizeInit() 1 4.341e-06 1.631e-05 9.364e-05 0.00% FillPatchSingleLevel 41 6.642e-05 7.249e-05 9.313e-05 0.00% Castro::construct_old_source() 50 4.497e-05 6.61e-05 8.198e-05 0.00% FabArray::ParallelCopy() 41 6.53e-05 7.158e-05 7.511e-05 0.00% FabArrayBase::getCPC() 41 4.53e-05 6.402e-05 7.451e-05 0.00% Amr::writeSmallPlotFile() 1 2.511e-05 6.093e-05 7.127e-05 0.00% Castro::do_new_sources() 10 5.321e-05 6.424e-05 7.033e-05 0.00% Castro::do_old_sources() 10 4.672e-05 6.153e-05 6.811e-05 0.00% Castro::advance() 10 3.669e-05 4.217e-05 5.574e-05 0.00% Castro::apply_source_to_state() 20 3.689e-05 4.645e-05 5.501e-05 0.00% Castro::construct_old_gravity() 10 3.704e-05 4.165e-05 5.02e-05 0.00% Castro::subcycle_advance_ctu() 10 3.281e-05 4.2e-05 4.849e-05 0.00% Amr::defBaseLevel() 1 2.975e-05 3.889e-05 4.431e-05 0.00% Castro::construct_new_gravity() 10 3.273e-05 3.824e-05 4.402e-05 0.00% Castro::enforce_speed_limit() 62 2.443e-05 3.178e-05 3.528e-05 0.00% FabArrayBase::CPC::define() 2 1.948e-05 2.551e-05 3.373e-05 0.00% Castro::check_for_nan() 20 2.383e-05 2.529e-05 2.798e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.293e-05 1.75e-05 2.368e-05 0.00% Amr::initSubcycle() 1 8.917e-06 1.1e-05 2.153e-05 0.00% Castro::create_source_corrector() 10 6.738e-06 1.029e-05 1.834e-05 0.00% Gravity::swapTimeLevels() 10 1.155e-05 1.359e-05 1.646e-05 0.00% Castro::post_timestep() 10 1.306e-05 1.43e-05 1.606e-05 0.00% Gravity::set_mass_offset() 10 1.037e-05 1.176e-05 1.299e-05 0.00% Castro::post_init() 1 3.555e-06 7.508e-06 1.215e-05 0.00% Castro::computeNewDt() 9 9.564e-06 1.069e-05 1.159e-05 0.00% Castro::FluxRegCrseInit 10 8.891e-06 9.571e-06 1.027e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.763e-06 5.497e-06 7.191e-06 0.00% Castro::retry_advance_ctu() 10 4.637e-06 5.601e-06 6.699e-06 0.00% Castro::post_regrid() 1 2.027e-06 3.469e-06 4.992e-06 0.00% Castro::computeInitialDt() 2 3.242e-06 4.012e-06 4.718e-06 0.00% Amr::InitializeInit() 1 1.961e-06 2.606e-06 4.67e-06 0.00% Amr::initialInit() 1 1.456e-06 2.075e-06 2.728e-06 0.00% Amr::init() 1 1.818e-06 2.345e-06 2.689e-06 0.00% Castro::FluxRegFineAdd() 10 1.832e-06 2.247e-06 2.487e-06 0.00% DistributionMapping::Distribute() 1 8.6e-07 1.039e-06 1.242e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.613 3.613 3.614 100.00% Amr::coarseTimeStep() 10 3.416 3.416 3.416 94.51% Amr::timeStep() 10 3.402 3.403 3.405 94.21% Castro::advance() 10 3.386 3.387 3.388 93.75% Castro::subcycle_advance_ctu() 10 3.297 3.307 3.313 91.66% Castro::do_advance_ctu() 10 3.297 3.307 3.313 91.66% Castro::construct_ctu_hydro_source() 10 2.351 2.395 2.411 66.71% Gravity::make_radial_gravity() 21 0.3343 0.3497 0.3676 10.17% Gravity::get_new_grav_vector() 11 0.2264 0.2311 0.2333 6.46% Castro::construct_old_gravity() 10 0.1947 0.203 0.216 5.98% Gravity::get_old_grav_vector() 10 0.194 0.2023 0.2154 5.96% Castro::construct_new_gravity() 10 0.2019 0.2061 0.2076 5.74% FillPatchIterator::Initialize 41 0.1641 0.1793 0.1917 5.30% Castro::initialize_do_advance() 10 0.1601 0.1738 0.1853 5.13% Amr::init() 1 0.1808 0.181 0.181 5.01% Amr::initialInit() 1 0.1635 0.1638 0.164 4.54% check_for_negative_density() 10 0.08595 0.1041 0.1485 4.11% FillPatchSingleLevel 41 0.1165 0.133 0.1454 4.02% Castro::expand_state() 10 0.112 0.1248 0.1377 3.81% Amr::InitializeInit() 1 0.06166 0.1002 0.135 3.74% Amr::defBaseLevel() 1 0.06166 0.1002 0.135 3.74% Castro::clean_state() 62 0.1153 0.1181 0.1251 3.46% Castro::initData() 1 0.04437 0.08243 0.1174 3.25% FabArray::ParallelCopy() 41 0.08225 0.09699 0.1111 3.07% Amr::FinalizeInit() 1 0.02894 0.06362 0.1019 2.82% Castro::estTimeStep() 21 0.0222 0.06746 0.1016 2.81% FabArray::setVal() 143 0.06471 0.0747 0.08884 2.46% Castro::initialize_advance() 10 0.07069 0.07646 0.08643 2.39% amrex::Copy() 193 0.06166 0.0743 0.08209 2.27% Castro::do_new_sources() 10 0.05986 0.06678 0.07746 2.14% FabArray::ParallelCopy_finish() 41 0.03922 0.05473 0.07576 2.10% Castro::computeTemp() 63 0.06821 0.07067 0.07551 2.09% Castro::computeInitialDt() 2 0.00223 0.03704 0.07544 2.09% Castro::reset_internal_energy(MultiFab) 63 0.04918 0.05081 0.05458 1.51% Castro::reset_internal_energy(Fab) 1008 0.04888 0.05051 0.05426 1.50% Castro::do_old_sources() 10 0.03984 0.04499 0.04617 1.28% FabArray::ParallelCopy_nowait() 41 0.03522 0.04219 0.04462 1.23% Castro::normalize_species() 62 0.04124 0.04216 0.04376 1.21% StateDataPhysBCFunct::() 41 0.03423 0.03592 0.03799 1.05% StateData::FillBoundary(geom) 41 0.03411 0.03581 0.03787 1.05% Castro::construct_new_source() 50 0.02856 0.03131 0.03551 0.98% Castro::construct_new_gravity_source() 10 0.02226 0.02518 0.02924 0.81% Gravity::interpolate_monopole_grav() 21 0.02826 0.02843 0.02872 0.79% Amr::writePlotFile() 2 0.0272 0.02736 0.02762 0.76% Castro::post_init() 1 0.02593 0.02621 0.02635 0.73% VisMF::Write(FabArray) 2 0.01364 0.01426 0.01772 0.49% Castro::post_timestep() 10 0.01566 0.01599 0.01621 0.45% Castro::apply_source_to_state() 20 0.01212 0.01368 0.0147 0.41% FabArray::Saxpy() 20 0.01208 0.01363 0.01465 0.41% FabArray::setDomainBndry() 41 0.008663 0.01171 0.01327 0.37% Castro::Castro() 1 0.01145 0.0117 0.01261 0.35% Castro::check_for_nan() 20 0.009792 0.01083 0.01186 0.33% MultiFab::contains_nan() 20 0.009768 0.0108 0.01183 0.33% Castro::construct_old_source() 50 0.007132 0.01013 0.01098 0.30% Castro::construct_old_gravity_source() 10 0.007087 0.01007 0.0109 0.30% Castro::initMFs() 1 0.006962 0.007272 0.009235 0.26% Castro::computeNewDt() 9 0.008615 0.008621 0.008625 0.24% AmrLevel::AmrLevel(dm) 1 0.005742 0.005885 0.006605 0.18% StateData::define() 4 0.005727 0.005867 0.006588 0.18% Castro::enforce_min_density() 62 0.005675 0.006033 0.006531 0.18% Castro::swap_state_time_levels() 10 0.003398 0.004579 0.004816 0.13% Castro::finalize_advance() 10 0.003029 0.003621 0.004605 0.13% Castro::buildMetrics() 1 0.001743 0.001806 0.002066 0.06% Castro::finalize_do_advance() 10 0.0006689 0.001512 0.001882 0.05% Castro::post_regrid() 1 0.001532 0.001628 0.001685 0.05% Amr::InitAmr() 1 0.0002844 0.0003187 0.0004437 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.266e-05 0.0001322 0.0001662 0.00% DistributionMapping::LeastUsedCPUs() 1 7.85e-06 0.0001257 0.0001578 0.00% Castro::enforce_consistent_e() 1 7.968e-05 9.138e-05 0.0001085 0.00% FabArrayBase::getCPC() 41 7.903e-05 8.953e-05 0.0001002 0.00% Amr::writeSmallPlotFile() 1 2.511e-05 6.093e-05 7.127e-05 0.00% Castro::enforce_speed_limit() 62 2.443e-05 3.178e-05 3.528e-05 0.00% FabArrayBase::CPC::define() 2 1.948e-05 2.551e-05 3.373e-05 0.00% Amr::initSubcycle() 1 8.917e-06 1.1e-05 2.153e-05 0.00% Castro::create_source_corrector() 10 6.738e-06 1.029e-05 1.834e-05 0.00% Gravity::swapTimeLevels() 10 1.155e-05 1.359e-05 1.646e-05 0.00% Gravity::set_mass_offset() 10 1.037e-05 1.176e-05 1.299e-05 0.00% Castro::FluxRegCrseInit 10 8.891e-06 9.571e-06 1.027e-05 0.00% Castro::retry_advance_ctu() 10 4.637e-06 5.601e-06 6.699e-06 0.00% Castro::FluxRegFineAdd() 10 1.832e-06 2.247e-06 2.487e-06 0.00% DistributionMapping::Distribute() 1 8.6e-07 1.039e-06 1.242e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-1-g08326158c80e) finalized