MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-1-g08326158c80e) initialized Starting run at 16:03:08 UTC on 2023-06-04. Successfully read inputs file ... Castro git describe: 23.06-5-gc0d326fe7 AMReX git describe: 23.06-1-g08326158c Microphysics git describe: 23.06-2-g726fe1e2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015685513 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36252469 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343903877 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.343126145 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.340363797 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354015838 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.357486406 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313079543 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314852732 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312960029 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311873535 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010558695 seconds Ending run at 16:03:12 UTC on 2023-06-04. Run time = 3.55356346 Run time without initialization = 3.372322285 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.552 ... 3.553 ... 3.554 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2886 2.3510 2.3946 67.38% Gravity::make_radial_gravity() 21 0.3239 0.3344 0.3444 9.69% check_for_negative_density() 10 0.0167 0.06465 0.1302 3.66% Castro::estTimeStep() 21 0.02295 0.07358 0.1228 3.45% Castro::initData() 1 0.03886 0.07705 0.114 3.21% FabArray::setVal() 143 0.06729 0.07924 0.09126 2.57% amrex::Copy() 193 0.07245 0.07552 0.08277 2.33% FabArray::ParallelCopy_finish() 41 0.03526 0.05832 0.0692 1.95% Castro::reset_internal_energy(Fab) 1008 0.04727 0.04946 0.05154 1.45% Castro::normalize_species() 62 0.0404 0.04239 0.04414 1.24% FabArray::ParallelCopy_nowait() 41 0.03907 0.04168 0.04346 1.22% FillPatchIterator::Initialize 41 0.02948 0.03478 0.04213 1.19% StateData::FillBoundary(geom) 41 0.0341 0.03756 0.04013 1.13% Castro::construct_new_gravity_source() 10 0.02295 0.02775 0.03615 1.02% Gravity::interpolate_monopole_grav() 21 0.02797 0.02855 0.02935 0.83% Castro::initialize_do_advance() 10 0.01359 0.01858 0.02311 0.65% Castro::computeTemp() 63 0.01798 0.01939 0.02089 0.59% FabArray::Saxpy() 20 0.01409 0.01527 0.01698 0.48% VisMF::Write(FabArray) 2 0.01346 0.01399 0.01667 0.47% Castro::initialize_advance() 10 0.009791 0.01258 0.01543 0.43% MultiFab::contains_nan() 20 0.01138 0.01235 0.0133 0.37% FabArray::setDomainBndry() 41 0.008641 0.01134 0.01295 0.36% Castro::construct_old_gravity_source() 10 0.008703 0.01058 0.01109 0.31% Amr::writePlotFile() 2 0.006832 0.009622 0.01026 0.29% Castro::construct_new_source() 50 0.006138 0.006538 0.008293 0.23% Castro::initMFs() 1 0.00703 0.007044 0.007061 0.20% main() 1 0.005058 0.00622 0.00687 0.19% Castro::enforce_min_density() 62 0.005871 0.006162 0.006565 0.18% StateData::define() 4 0.005824 0.00585 0.0059 0.17% Amr::coarseTimeStep() 10 0.001823 0.003889 0.005614 0.16% Castro::swap_state_time_levels() 10 0.003596 0.004847 0.005055 0.14% Gravity::get_new_grav_vector() 11 0.003124 0.003647 0.004055 0.11% Gravity::get_old_grav_vector() 10 0.001795 0.002331 0.002628 0.07% Castro::finalize_do_advance() 10 0.001097 0.001691 0.001859 0.05% Castro::buildMetrics() 1 0.001661 0.001681 0.001719 0.05% Castro::expand_state() 10 0.0006457 0.0008475 0.001006 0.03% Amr::timeStep() 10 0.0001906 0.0002475 0.0004471 0.01% Amr::InitAmr() 1 0.0002655 0.0002965 0.0004212 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002668 0.0002832 0.000293 0.01% Castro::do_advance_ctu() 10 0.0002231 0.0002518 0.0002904 0.01% DistributionMapping::LeastUsedCPUs() 1 7.335e-06 0.0001318 0.0001655 0.00% Castro::clean_state() 62 0.0001307 0.0001481 0.0001646 0.00% Castro::finalize_advance() 10 8.927e-05 0.0001087 0.0001355 0.00% StateDataPhysBCFunct::() 41 8.181e-05 0.0001005 0.0001262 0.00% Castro::do_new_sources() 10 5.072e-05 6.791e-05 0.0001075 0.00% Castro::enforce_consistent_e() 1 7.566e-05 8.596e-05 9.56e-05 0.00% Castro::Castro() 1 6.007e-05 7.232e-05 9.353e-05 0.00% FabArray::ParallelCopy() 41 5.943e-05 7.303e-05 8.942e-05 0.00% Amr::FinalizeInit() 1 3.48e-06 1.57e-05 8.838e-05 0.00% Castro::construct_old_source() 50 4.86e-05 6.67e-05 8.27e-05 0.00% FillPatchSingleLevel 41 6.403e-05 6.878e-05 7.398e-05 0.00% Castro::do_old_sources() 10 4.445e-05 5.965e-05 7.212e-05 0.00% FabArrayBase::getCPC() 41 4.233e-05 5.37e-05 6.999e-05 0.00% Amr::writeSmallPlotFile() 1 2.61e-05 5.227e-05 6.68e-05 0.00% Castro::apply_source_to_state() 20 3.439e-05 5.095e-05 6.351e-05 0.00% Castro::subcycle_advance_ctu() 10 4.119e-05 4.779e-05 5.901e-05 0.00% Castro::advance() 10 3.722e-05 4.586e-05 5.362e-05 0.00% Castro::construct_old_gravity() 10 3.388e-05 4.049e-05 4.911e-05 0.00% Castro::construct_new_gravity() 10 3.57e-05 4.012e-05 4.909e-05 0.00% Amr::defBaseLevel() 1 2.775e-05 3.076e-05 3.718e-05 0.00% Castro::enforce_speed_limit() 62 2.427e-05 2.673e-05 3.54e-05 0.00% FabArrayBase::CPC::define() 2 1.998e-05 2.364e-05 2.737e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.249e-05 1.762e-05 2.425e-05 0.00% Castro::check_for_nan() 20 1.998e-05 2.256e-05 2.417e-05 0.00% Castro::post_timestep() 10 1.173e-05 1.557e-05 1.874e-05 0.00% Castro::FluxRegCrseInit 10 9.126e-06 1.276e-05 1.75e-05 0.00% Gravity::swapTimeLevels() 10 1.149e-05 1.428e-05 1.639e-05 0.00% Gravity::set_mass_offset() 10 8.658e-06 1.124e-05 1.471e-05 0.00% Castro::post_init() 1 3.283e-06 4.892e-06 1.179e-05 0.00% Castro::computeNewDt() 9 7.672e-06 9.441e-06 1.076e-05 0.00% Amr::initSubcycle() 1 9.063e-06 9.455e-06 1.053e-05 0.00% Castro::create_source_corrector() 10 7.992e-06 8.72e-06 9.381e-06 0.00% Castro::retry_advance_ctu() 10 4.453e-06 5.718e-06 8.561e-06 0.00% Amr::InitializeInit() 1 2.097e-06 2.996e-06 5.857e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.553e-06 4.562e-06 5.758e-06 0.00% Castro::computeInitialDt() 2 3.304e-06 4.288e-06 5.182e-06 0.00% Castro::post_regrid() 1 2.284e-06 3.274e-06 4.501e-06 0.00% Amr::init() 1 1.687e-06 2.205e-06 2.785e-06 0.00% Amr::initialInit() 1 1.263e-06 1.852e-06 2.719e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.247e-06 2.554e-06 0.00% DistributionMapping::Distribute() 1 8.34e-07 9.738e-07 1.151e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.552 3.553 3.554 100.00% Amr::coarseTimeStep() 10 3.355 3.355 3.355 94.41% Amr::timeStep() 10 3.34 3.341 3.343 94.08% Castro::advance() 10 3.324 3.325 3.326 93.60% Castro::subcycle_advance_ctu() 10 3.23 3.241 3.25 91.46% Castro::do_advance_ctu() 10 3.23 3.241 3.25 91.45% Castro::construct_ctu_hydro_source() 10 2.289 2.351 2.395 67.38% Gravity::make_radial_gravity() 21 0.3412 0.352 0.3622 10.19% Gravity::get_new_grav_vector() 11 0.2274 0.2291 0.2307 6.49% Castro::construct_old_gravity() 10 0.2016 0.2093 0.2182 6.14% Gravity::get_old_grav_vector() 10 0.2003 0.2083 0.217 6.11% Castro::construct_new_gravity() 10 0.2029 0.2041 0.2062 5.80% FillPatchIterator::Initialize 41 0.166 0.184 0.2007 5.65% Castro::initialize_do_advance() 10 0.1617 0.1773 0.1906 5.36% Amr::init() 1 0.1807 0.1808 0.1808 5.09% Amr::initialInit() 1 0.1646 0.1648 0.1649 4.64% FillPatchSingleLevel 41 0.1174 0.1379 0.152 4.28% Castro::expand_state() 10 0.11 0.1284 0.1433 4.03% Amr::InitializeInit() 1 0.06095 0.09921 0.1363 3.83% Amr::defBaseLevel() 1 0.06095 0.09921 0.1363 3.83% check_for_negative_density() 10 0.0167 0.06465 0.1302 3.66% Castro::estTimeStep() 21 0.02295 0.07358 0.1228 3.45% Castro::clean_state() 62 0.1117 0.1169 0.1224 3.44% Castro::initData() 1 0.04292 0.08118 0.1182 3.33% FabArray::ParallelCopy() 41 0.07736 0.1001 0.1126 3.17% Amr::FinalizeInit() 1 0.02867 0.06559 0.1038 2.92% Castro::initialize_advance() 10 0.0708 0.0803 0.09139 2.57% FabArray::setVal() 143 0.06729 0.07924 0.09126 2.57% Castro::do_new_sources() 10 0.06028 0.07168 0.08452 2.38% amrex::Copy() 193 0.07245 0.07552 0.08277 2.33% Castro::computeInitialDt() 2 0.002051 0.03909 0.07739 2.18% Castro::computeTemp() 63 0.06567 0.06913 0.07268 2.05% FabArray::ParallelCopy_finish() 41 0.03526 0.05832 0.0692 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04754 0.04975 0.05183 1.46% Castro::reset_internal_energy(Fab) 1008 0.04727 0.04946 0.05154 1.45% Castro::do_old_sources() 10 0.04444 0.04625 0.04745 1.34% Castro::construct_new_source() 50 0.02932 0.03429 0.04444 1.25% Castro::normalize_species() 62 0.0404 0.04239 0.04414 1.24% FabArray::ParallelCopy_nowait() 41 0.03915 0.04176 0.04355 1.23% StateDataPhysBCFunct::() 41 0.03418 0.03766 0.04023 1.13% StateData::FillBoundary(geom) 41 0.0341 0.03756 0.04013 1.13% Castro::construct_new_gravity_source() 10 0.02295 0.02775 0.03615 1.02% Gravity::interpolate_monopole_grav() 21 0.02797 0.02855 0.02935 0.83% Amr::writePlotFile() 2 0.02647 0.02661 0.02681 0.75% Castro::post_init() 1 0.02579 0.02599 0.02613 0.74% Castro::post_timestep() 10 0.0153 0.01602 0.01716 0.48% Castro::apply_source_to_state() 20 0.01414 0.01533 0.01703 0.48% FabArray::Saxpy() 20 0.01409 0.01527 0.01698 0.48% VisMF::Write(FabArray) 2 0.01346 0.01399 0.01667 0.47% Castro::check_for_nan() 20 0.0114 0.01237 0.01332 0.37% MultiFab::contains_nan() 20 0.01138 0.01235 0.0133 0.37% FabArray::setDomainBndry() 41 0.008641 0.01134 0.01295 0.36% Castro::Castro() 1 0.01194 0.01199 0.01203 0.34% Castro::construct_old_source() 50 0.008751 0.01064 0.01116 0.31% Castro::construct_old_gravity_source() 10 0.008703 0.01058 0.01109 0.31% Castro::computeNewDt() 9 0.008758 0.008764 0.008771 0.25% Castro::initMFs() 1 0.00703 0.007044 0.007061 0.20% Castro::enforce_min_density() 62 0.005871 0.006162 0.006565 0.18% AmrLevel::AmrLevel(dm) 1 0.005845 0.005868 0.005914 0.17% StateData::define() 4 0.005824 0.00585 0.0059 0.17% Castro::finalize_advance() 10 0.003109 0.004033 0.005163 0.15% Castro::swap_state_time_levels() 10 0.003596 0.004847 0.005055 0.14% Castro::finalize_do_advance() 10 0.001097 0.001691 0.001859 0.05% Castro::buildMetrics() 1 0.001798 0.001822 0.001849 0.05% Castro::post_regrid() 1 0.001534 0.001586 0.001716 0.05% Amr::InitAmr() 1 0.0002746 0.000306 0.0004305 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.172e-05 0.0001373 0.0001722 0.00% DistributionMapping::LeastUsedCPUs() 1 7.335e-06 0.0001318 0.0001655 0.00% Castro::enforce_consistent_e() 1 7.566e-05 8.596e-05 9.56e-05 0.00% FabArrayBase::getCPC() 41 6.64e-05 7.733e-05 8.998e-05 0.00% Amr::writeSmallPlotFile() 1 2.61e-05 5.227e-05 6.68e-05 0.00% Castro::enforce_speed_limit() 62 2.427e-05 2.673e-05 3.54e-05 0.00% FabArrayBase::CPC::define() 2 1.998e-05 2.364e-05 2.737e-05 0.00% Castro::FluxRegCrseInit 10 9.126e-06 1.276e-05 1.75e-05 0.00% Gravity::swapTimeLevels() 10 1.149e-05 1.428e-05 1.639e-05 0.00% Gravity::set_mass_offset() 10 8.658e-06 1.124e-05 1.471e-05 0.00% Amr::initSubcycle() 1 9.063e-06 9.455e-06 1.053e-05 0.00% Castro::create_source_corrector() 10 7.992e-06 8.72e-06 9.381e-06 0.00% Castro::retry_advance_ctu() 10 4.453e-06 5.718e-06 8.561e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.247e-06 2.554e-06 0.00% DistributionMapping::Distribute() 1 8.34e-07 9.738e-07 1.151e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-1-g08326158c80e) finalized