MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-3-g572f226f4c98) initialized Starting run at 12:04:34 UTC on 2023-06-05. Successfully read inputs file ... Castro git describe: 23.06-10-g0e0fbc79e AMReX git describe: 23.06-3-g572f226f4 Microphysics git describe: 23.06-2-g726fe1e2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015998265 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373536866 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354000346 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.372928754 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336196392 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.369613725 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336276238 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312842993 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313323127 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313279601 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314785068 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010266007 seconds Ending run at 12:04:38 UTC on 2023-06-05. Run time = 3.598577767 Run time without initialization = 3.414761784 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.597 ... 3.598 ... 3.599 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3304 2.3755 2.4324 67.59% Gravity::make_radial_gravity() 21 0.3307 0.3377 0.3435 9.54% check_for_negative_density() 10 0.0314 0.09161 0.138 3.83% Castro::initData() 1 0.03861 0.07725 0.1156 3.21% Castro::estTimeStep() 21 0.03713 0.06846 0.09919 2.76% amrex::Copy() 193 0.07536 0.07925 0.08759 2.43% FabArray::setVal() 143 0.06734 0.07607 0.08696 2.42% FabArray::ParallelCopy_finish() 41 0.03515 0.05139 0.06196 1.72% Castro::reset_internal_energy(Fab) 1008 0.04898 0.05005 0.05102 1.42% FabArray::ParallelCopy_nowait() 41 0.04046 0.04315 0.04434 1.23% Castro::normalize_species() 62 0.04091 0.04198 0.04315 1.20% StateData::FillBoundary(geom) 41 0.0358 0.03791 0.04069 1.13% FillPatchIterator::Initialize 41 0.03036 0.03522 0.03773 1.05% Castro::construct_new_gravity_source() 10 0.02297 0.02578 0.02922 0.81% Gravity::interpolate_monopole_grav() 21 0.02789 0.02822 0.02886 0.80% Castro::initialize_do_advance() 10 0.01811 0.01968 0.02281 0.63% Castro::computeTemp() 63 0.01955 0.02027 0.0207 0.58% VisMF::Write(FabArray) 2 0.01341 0.01393 0.01662 0.46% FabArray::Saxpy() 20 0.01456 0.01491 0.0155 0.43% Castro::initialize_advance() 10 0.009725 0.01253 0.0153 0.43% FabArray::setDomainBndry() 41 0.01038 0.01231 0.01351 0.38% MultiFab::contains_nan() 20 0.01058 0.01155 0.01247 0.35% Castro::construct_old_gravity_source() 10 0.01056 0.01072 0.01098 0.31% Amr::writePlotFile() 2 0.006964 0.009711 0.01046 0.29% Castro::initMFs() 1 0.006923 0.006942 0.006964 0.19% main() 1 0.005487 0.00649 0.006917 0.19% Castro::construct_new_source() 50 0.006199 0.006368 0.006593 0.18% Castro::enforce_min_density() 62 0.006007 0.006158 0.006495 0.18% Gravity::get_new_grav_vector() 11 0.003254 0.004322 0.00627 0.17% StateData::define() 4 0.005721 0.005749 0.005784 0.16% Castro::swap_state_time_levels() 10 0.003522 0.004729 0.004911 0.14% Gravity::get_old_grav_vector() 10 0.001987 0.00266 0.003105 0.09% Amr::coarseTimeStep() 10 0.001176 0.002103 0.002953 0.08% Castro::finalize_do_advance() 10 0.001733 0.001955 0.002262 0.06% Castro::buildMetrics() 1 0.00162 0.001633 0.00164 0.05% Castro::expand_state() 10 0.001016 0.001178 0.001274 0.04% Amr::InitAmr() 1 0.0002704 0.0003343 0.0005165 0.01% Amr::timeStep() 10 0.0001825 0.0002528 0.0004396 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002786 0.0002946 0.0003362 0.01% DistributionMapping::LeastUsedCPUs() 1 6.964e-06 0.0002143 0.0002815 0.01% Castro::do_advance_ctu() 10 0.0002066 0.0002479 0.000273 0.01% Castro::Castro() 1 6.909e-05 9.158e-05 0.0001671 0.00% Castro::clean_state() 62 0.0001413 0.0001525 0.0001656 0.00% StateDataPhysBCFunct::() 41 7.67e-05 0.0001027 0.0001327 0.00% Castro::finalize_advance() 10 8.636e-05 0.0001052 0.0001265 0.00% Amr::writeSmallPlotFile() 1 2.595e-05 5.948e-05 0.0001135 0.00% Amr::FinalizeInit() 1 3.969e-06 1.777e-05 0.0001077 0.00% Castro::enforce_consistent_e() 1 7.94e-05 8.954e-05 9.922e-05 0.00% FabArray::ParallelCopy() 41 7.014e-05 7.793e-05 8.584e-05 0.00% Castro::do_old_sources() 10 5.623e-05 6.743e-05 8.185e-05 0.00% FillPatchSingleLevel 41 5.991e-05 7.03e-05 8.029e-05 0.00% Castro::construct_old_source() 50 5.499e-05 6.902e-05 7.989e-05 0.00% Castro::do_new_sources() 10 5.163e-05 6.272e-05 7.866e-05 0.00% FabArrayBase::getCPC() 41 3.884e-05 5.688e-05 7.242e-05 0.00% Castro::apply_source_to_state() 20 3.296e-05 4.535e-05 6.256e-05 0.00% Amr::defBaseLevel() 1 3.252e-05 4.087e-05 5.777e-05 0.00% Castro::advance() 10 3.387e-05 4.518e-05 5.645e-05 0.00% Castro::subcycle_advance_ctu() 10 3.615e-05 4.539e-05 5.139e-05 0.00% Castro::construct_new_gravity() 10 3.474e-05 4.115e-05 5.094e-05 0.00% Castro::construct_old_gravity() 10 3.305e-05 4.11e-05 4.4e-05 0.00% Castro::enforce_speed_limit() 62 2.569e-05 2.789e-05 3.262e-05 0.00% FabArrayBase::CPC::define() 2 2.095e-05 2.385e-05 3.029e-05 0.00% Castro::check_for_nan() 20 2.13e-05 2.424e-05 2.81e-05 0.00% Amr::initSubcycle() 1 9.078e-06 1.25e-05 2.727e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.265e-05 1.639e-05 2.007e-05 0.00% Castro::post_timestep() 10 1.28e-05 1.503e-05 1.951e-05 0.00% Gravity::swapTimeLevels() 10 1.182e-05 1.438e-05 1.727e-05 0.00% Gravity::set_mass_offset() 10 9.078e-06 1.156e-05 1.464e-05 0.00% Castro::computeNewDt() 9 8.498e-06 1.109e-05 1.354e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.74e-06 6.223e-06 1.149e-05 0.00% Castro::post_init() 1 3.08e-06 5.674e-06 1.126e-05 0.00% Castro::FluxRegCrseInit 10 8.58e-06 9.357e-06 1.057e-05 0.00% Castro::create_source_corrector() 10 8.406e-06 9.534e-06 1.054e-05 0.00% Castro::retry_advance_ctu() 10 5.151e-06 5.836e-06 6.83e-06 0.00% Amr::InitializeInit() 1 2.274e-06 3.014e-06 5.615e-06 0.00% Castro::computeInitialDt() 2 3.783e-06 4.509e-06 5.462e-06 0.00% Castro::post_regrid() 1 1.778e-06 3.219e-06 5.245e-06 0.00% Amr::init() 1 1.85e-06 2.319e-06 3.409e-06 0.00% Castro::FluxRegFineAdd() 10 1.995e-06 2.239e-06 2.788e-06 0.00% Amr::initialInit() 1 1.688e-06 2.051e-06 2.547e-06 0.00% DistributionMapping::Distribute() 1 9.04e-07 1.277e-06 1.884e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.597 3.598 3.599 100.00% Amr::coarseTimeStep() 10 3.398 3.398 3.398 94.42% Amr::timeStep() 10 3.385 3.386 3.387 94.11% Castro::advance() 10 3.369 3.37 3.37 93.65% Castro::subcycle_advance_ctu() 10 3.284 3.29 3.295 91.55% Castro::do_advance_ctu() 10 3.284 3.29 3.295 91.55% Castro::construct_ctu_hydro_source() 10 2.33 2.375 2.432 67.59% Gravity::make_radial_gravity() 21 0.3491 0.3559 0.3622 10.07% Gravity::get_new_grav_vector() 11 0.2294 0.2316 0.2335 6.49% Castro::construct_old_gravity() 10 0.2069 0.2115 0.2169 6.03% Gravity::get_old_grav_vector() 10 0.2062 0.2107 0.2162 6.01% Castro::construct_new_gravity() 10 0.2052 0.2065 0.2074 5.76% FillPatchIterator::Initialize 41 0.166 0.1803 0.1915 5.32% Amr::init() 1 0.1831 0.1833 0.1834 5.10% Castro::initialize_do_advance() 10 0.1636 0.1733 0.1821 5.06% Amr::initialInit() 1 0.1666 0.167 0.1674 4.65% FillPatchSingleLevel 41 0.1205 0.1328 0.1418 3.94% Amr::InitializeInit() 1 0.06059 0.09937 0.1381 3.84% Amr::defBaseLevel() 1 0.06059 0.09937 0.1381 3.84% check_for_negative_density() 10 0.0314 0.09161 0.138 3.83% Castro::expand_state() 10 0.1117 0.1231 0.1329 3.69% Castro::clean_state() 62 0.1158 0.118 0.1208 3.36% Castro::initData() 1 0.04264 0.0815 0.1202 3.34% Amr::FinalizeInit() 1 0.02876 0.06768 0.1068 2.97% FabArray::ParallelCopy() 41 0.07962 0.0947 0.1055 2.93% Castro::estTimeStep() 21 0.03713 0.06846 0.09919 2.76% amrex::Copy() 193 0.07536 0.07925 0.08759 2.43% FabArray::setVal() 143 0.06734 0.07607 0.08696 2.42% Castro::initialize_advance() 10 0.07183 0.07652 0.08261 2.30% Castro::computeInitialDt() 2 0.002031 0.04074 0.07958 2.21% Castro::do_new_sources() 10 0.0608 0.06886 0.07726 2.15% Castro::computeTemp() 63 0.06925 0.07062 0.07195 2.00% FabArray::ParallelCopy_finish() 41 0.03515 0.05139 0.06196 1.72% Castro::reset_internal_energy(MultiFab) 63 0.04928 0.05035 0.05131 1.43% Castro::reset_internal_energy(Fab) 1008 0.04898 0.05005 0.05102 1.42% Castro::do_old_sources() 10 0.04555 0.04691 0.04946 1.37% FabArray::ParallelCopy_nowait() 41 0.04055 0.04323 0.04441 1.23% Castro::normalize_species() 62 0.04091 0.04198 0.04315 1.20% StateDataPhysBCFunct::() 41 0.03588 0.03802 0.04079 1.13% StateData::FillBoundary(geom) 41 0.0358 0.03791 0.04069 1.13% Castro::construct_new_source() 50 0.02918 0.03215 0.03579 0.99% Castro::construct_new_gravity_source() 10 0.02297 0.02578 0.02922 0.81% Gravity::interpolate_monopole_grav() 21 0.02789 0.02822 0.02886 0.80% Amr::writePlotFile() 2 0.02637 0.02661 0.02683 0.75% Castro::post_init() 1 0.02617 0.02639 0.02669 0.74% VisMF::Write(FabArray) 2 0.01341 0.01393 0.01662 0.46% Castro::post_timestep() 10 0.01566 0.01593 0.01618 0.45% Castro::apply_source_to_state() 20 0.0146 0.01496 0.01556 0.43% FabArray::Saxpy() 20 0.01456 0.01491 0.0155 0.43% FabArray::setDomainBndry() 41 0.01038 0.01231 0.01351 0.38% Castro::check_for_nan() 20 0.0106 0.01158 0.0125 0.35% MultiFab::contains_nan() 20 0.01058 0.01155 0.01247 0.35% Castro::Castro() 1 0.01181 0.01184 0.0119 0.33% Castro::construct_old_source() 50 0.01062 0.01079 0.01106 0.31% Castro::construct_old_gravity_source() 10 0.01056 0.01072 0.01098 0.31% Castro::computeNewDt() 9 0.008593 0.008615 0.008626 0.24% Castro::initMFs() 1 0.006923 0.006942 0.006964 0.19% Castro::enforce_min_density() 62 0.006007 0.006158 0.006495 0.18% AmrLevel::AmrLevel(dm) 1 0.005738 0.005765 0.005804 0.16% StateData::define() 4 0.005721 0.005749 0.005784 0.16% Castro::swap_state_time_levels() 10 0.003522 0.004729 0.004911 0.14% Castro::finalize_advance() 10 0.002978 0.003465 0.003981 0.11% Castro::finalize_do_advance() 10 0.001733 0.001955 0.002262 0.06% Castro::buildMetrics() 1 0.001762 0.001773 0.001785 0.05% Castro::post_regrid() 1 0.00157 0.001615 0.001652 0.05% Amr::InitAmr() 1 0.0002794 0.0003468 0.0005438 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.296e-05 0.0002218 0.0002891 0.01% DistributionMapping::LeastUsedCPUs() 1 6.964e-06 0.0002143 0.0002815 0.01% Amr::writeSmallPlotFile() 1 2.595e-05 5.948e-05 0.0001135 0.00% Castro::enforce_consistent_e() 1 7.94e-05 8.954e-05 9.922e-05 0.00% FabArrayBase::getCPC() 41 6.4e-05 8.074e-05 9.862e-05 0.00% Castro::enforce_speed_limit() 62 2.569e-05 2.789e-05 3.262e-05 0.00% FabArrayBase::CPC::define() 2 2.095e-05 2.385e-05 3.029e-05 0.00% Amr::initSubcycle() 1 9.078e-06 1.25e-05 2.727e-05 0.00% Gravity::swapTimeLevels() 10 1.182e-05 1.438e-05 1.727e-05 0.00% Gravity::set_mass_offset() 10 9.078e-06 1.156e-05 1.464e-05 0.00% Castro::FluxRegCrseInit 10 8.58e-06 9.357e-06 1.057e-05 0.00% Castro::create_source_corrector() 10 8.406e-06 9.534e-06 1.054e-05 0.00% Castro::retry_advance_ctu() 10 5.151e-06 5.836e-06 6.83e-06 0.00% Castro::FluxRegFineAdd() 10 1.995e-06 2.239e-06 2.788e-06 0.00% DistributionMapping::Distribute() 1 9.04e-07 1.277e-06 1.884e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-3-g572f226f4c98) finalized