MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-5-ga2a22dabc2c4) initialized Starting run at 01:11:26 UTC on 2023-06-06. Successfully read inputs file ... Castro git describe: 23.06-9-g107aa60c7 AMReX git describe: 23.06-5-ga2a22dabc Microphysics git describe: 23.06-2-g726fe1e2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015819465 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363609765 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.344270316 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334948149 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335056542 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368869514 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352028724 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312107557 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311524992 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310257146 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.309325734 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010757069 seconds Ending run at 01:11:30 UTC on 2023-06-06. Run time = 3.551471009 Run time without initialization = 3.360408838 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.55 ... 3.551 ... 3.552 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2904 2.3438 2.3776 66.95% Gravity::make_radial_gravity() 21 0.3251 0.3367 0.3427 9.65% Castro::estTimeStep() 21 0.0259 0.06485 0.1288 3.63% Castro::initData() 1 0.03828 0.08678 0.1129 3.18% check_for_negative_density() 10 0.02163 0.05833 0.1124 3.16% FabArray::setVal() 143 0.06499 0.07847 0.09253 2.61% amrex::Copy() 193 0.07288 0.07722 0.08615 2.43% FabArray::ParallelCopy_finish() 41 0.03668 0.06041 0.07 1.97% Castro::reset_internal_energy(Fab) 1008 0.04834 0.05016 0.05191 1.46% Castro::normalize_species() 62 0.04123 0.04285 0.0445 1.25% FabArray::ParallelCopy_nowait() 41 0.04109 0.0431 0.0445 1.25% StateData::FillBoundary(geom) 41 0.03288 0.03607 0.04181 1.18% FillPatchIterator::Initialize 41 0.02996 0.03617 0.04067 1.15% Castro::construct_new_gravity_source() 10 0.02307 0.02717 0.03204 0.90% Gravity::interpolate_monopole_grav() 21 0.02787 0.02863 0.03183 0.90% Castro::initialize_do_advance() 10 0.01235 0.01896 0.02305 0.65% Castro::computeTemp() 63 0.01885 0.02023 0.02122 0.60% VisMF::Write(FabArray) 2 0.01382 0.01433 0.01697 0.48% FabArray::Saxpy() 20 0.01387 0.01549 0.01684 0.47% Castro::initialize_advance() 10 0.009648 0.01254 0.01571 0.44% FabArray::setDomainBndry() 41 0.009196 0.0121 0.01392 0.39% MultiFab::contains_nan() 20 0.01048 0.01134 0.0122 0.34% Castro::construct_old_gravity_source() 10 0.009085 0.01102 0.01166 0.33% Castro::initMFs() 1 0.007002 0.008021 0.01104 0.31% Amr::writePlotFile() 2 0.006885 0.009581 0.01029 0.29% StateData::define() 4 0.005774 0.006481 0.008547 0.24% main() 1 0.005343 0.006308 0.006938 0.20% Castro::construct_new_source() 50 0.006097 0.006315 0.006527 0.18% Castro::enforce_min_density() 62 0.00579 0.006087 0.006263 0.18% Castro::swap_state_time_levels() 10 0.003513 0.004798 0.005253 0.15% Gravity::get_new_grav_vector() 11 0.003221 0.00396 0.004372 0.12% Amr::coarseTimeStep() 10 0.001222 0.002377 0.003698 0.10% Gravity::get_old_grav_vector() 10 0.001831 0.002582 0.00309 0.09% Castro::buildMetrics() 1 0.00163 0.001844 0.002445 0.07% Castro::finalize_do_advance() 10 0.001663 0.001976 0.00225 0.06% Castro::expand_state() 10 0.0008037 0.001064 0.001374 0.04% Amr::InitAmr() 1 0.0002769 0.0003529 0.0005035 0.01% Amr::timeStep() 10 0.0001897 0.0002498 0.0004165 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002803 0.000293 0.0003041 0.01% Castro::do_advance_ctu() 10 0.0002154 0.0002467 0.0002801 0.01% DistributionMapping::LeastUsedCPUs() 1 8.621e-06 0.0001851 0.0002715 0.01% Castro::enforce_consistent_e() 1 7.682e-05 0.0001123 0.000194 0.01% StateDataPhysBCFunct::() 41 8.07e-05 0.000116 0.000183 0.01% Castro::clean_state() 62 0.0001286 0.0001456 0.0001669 0.00% Castro::finalize_advance() 10 8.199e-05 9.988e-05 0.0001152 0.00% FillPatchSingleLevel 41 6.233e-05 7.933e-05 0.000114 0.00% FabArray::ParallelCopy() 41 5.886e-05 7.774e-05 9.582e-05 0.00% Amr::FinalizeInit() 1 5.036e-06 1.643e-05 9.259e-05 0.00% Castro::do_old_sources() 10 4.816e-05 6.511e-05 8.964e-05 0.00% Castro::Castro() 1 6.32e-05 7.242e-05 8.275e-05 0.00% Castro::construct_old_source() 50 4.996e-05 6.425e-05 7.471e-05 0.00% FabArrayBase::getCPC() 41 3.272e-05 4.918e-05 7.016e-05 0.00% Castro::do_new_sources() 10 4.952e-05 6.131e-05 6.704e-05 0.00% Amr::writeSmallPlotFile() 1 2.644e-05 4.971e-05 6.365e-05 0.00% Castro::subcycle_advance_ctu() 10 4.238e-05 4.92e-05 6.02e-05 0.00% Amr::defBaseLevel() 1 3.037e-05 4.205e-05 5.794e-05 0.00% Castro::construct_new_gravity() 10 3.419e-05 4.311e-05 5.68e-05 0.00% Castro::apply_source_to_state() 20 3.197e-05 4.498e-05 5.663e-05 0.00% Castro::construct_old_gravity() 10 3.335e-05 4.116e-05 5.232e-05 0.00% Castro::advance() 10 3.521e-05 4.077e-05 4.626e-05 0.00% FabArrayBase::CPC::define() 2 2.009e-05 2.586e-05 3.584e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.281e-05 1.738e-05 2.985e-05 0.00% Castro::enforce_speed_limit() 62 2.379e-05 2.622e-05 2.904e-05 0.00% Castro::check_for_nan() 20 1.957e-05 2.356e-05 2.674e-05 0.00% Gravity::swapTimeLevels() 10 1.062e-05 1.478e-05 1.708e-05 0.00% Castro::FluxRegCrseInit 10 7.502e-06 1.141e-05 1.691e-05 0.00% Amr::initSubcycle() 1 9.025e-06 1.136e-05 1.639e-05 0.00% Castro::post_timestep() 10 1.173e-05 1.399e-05 1.617e-05 0.00% Gravity::set_mass_offset() 10 9.241e-06 1.115e-05 1.273e-05 0.00% Castro::post_init() 1 3.223e-06 6.152e-06 1.193e-05 0.00% Castro::computeNewDt() 9 9.104e-06 1.027e-05 1.153e-05 0.00% Castro::create_source_corrector() 10 8.092e-06 8.854e-06 1.04e-05 0.00% Castro::retry_advance_ctu() 10 4.541e-06 5.838e-06 7.615e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.656e-06 5.563e-06 6.988e-06 0.00% Castro::computeInitialDt() 2 4.209e-06 4.884e-06 5.669e-06 0.00% Castro::post_regrid() 1 2.411e-06 3.565e-06 4.686e-06 0.00% Amr::InitializeInit() 1 1.803e-06 2.644e-06 4.636e-06 0.00% Amr::init() 1 1.749e-06 2.611e-06 3.533e-06 0.00% Amr::initialInit() 1 1.77e-06 2.156e-06 2.688e-06 0.00% Castro::FluxRegFineAdd() 10 2.03e-06 2.155e-06 2.31e-06 0.00% DistributionMapping::Distribute() 1 8.37e-07 1.184e-06 1.679e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.55 3.551 3.552 100.00% Amr::coarseTimeStep() 10 3.343 3.343 3.343 94.12% Amr::timeStep() 10 3.329 3.331 3.332 93.81% Castro::advance() 10 3.313 3.314 3.315 93.35% Castro::subcycle_advance_ctu() 10 3.22 3.23 3.239 91.20% Castro::do_advance_ctu() 10 3.22 3.23 3.239 91.20% Castro::construct_ctu_hydro_source() 10 2.29 2.344 2.378 66.95% Gravity::make_radial_gravity() 21 0.3421 0.3544 0.3598 10.13% Gravity::get_new_grav_vector() 11 0.2383 0.2411 0.2465 6.94% Castro::construct_new_gravity() 10 0.2069 0.2085 0.214 6.02% Castro::construct_old_gravity() 10 0.1958 0.206 0.2107 5.93% Gravity::get_old_grav_vector() 10 0.1945 0.205 0.2094 5.90% FillPatchIterator::Initialize 41 0.1677 0.1882 0.2045 5.76% Amr::init() 1 0.1903 0.1905 0.1906 5.37% Castro::initialize_do_advance() 10 0.1613 0.1769 0.1891 5.33% Amr::initialInit() 1 0.1742 0.1745 0.1748 4.92% FillPatchSingleLevel 41 0.1143 0.1399 0.1551 4.37% Castro::expand_state() 10 0.1121 0.1273 0.1407 3.96% Amr::InitializeInit() 1 0.05952 0.1103 0.1372 3.86% Amr::defBaseLevel() 1 0.05951 0.1103 0.1372 3.86% Castro::estTimeStep() 21 0.0259 0.06485 0.1288 3.63% Castro::clean_state() 62 0.115 0.1187 0.1224 3.45% Castro::initData() 1 0.04214 0.09134 0.117 3.30% Amr::FinalizeInit() 1 0.037 0.06417 0.1152 3.24% FabArray::ParallelCopy() 41 0.08033 0.1037 0.1136 3.20% check_for_negative_density() 10 0.02163 0.05833 0.1124 3.16% FabArray::setVal() 143 0.06499 0.07847 0.09253 2.61% Castro::initialize_advance() 10 0.07136 0.0803 0.09031 2.54% amrex::Copy() 193 0.07288 0.07722 0.08615 2.43% Castro::do_new_sources() 10 0.05996 0.07138 0.08337 2.35% Castro::computeInitialDt() 2 0.002666 0.02971 0.08063 2.27% Castro::computeTemp() 63 0.06842 0.07069 0.07337 2.07% FabArray::ParallelCopy_finish() 41 0.03668 0.06041 0.07 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04862 0.05046 0.05221 1.47% Castro::reset_internal_energy(Fab) 1008 0.04834 0.05016 0.05191 1.46% Castro::do_old_sources() 10 0.04604 0.04696 0.04789 1.35% FabArray::ParallelCopy_nowait() 41 0.04119 0.04317 0.04458 1.26% Castro::normalize_species() 62 0.04123 0.04285 0.0445 1.25% StateDataPhysBCFunct::() 41 0.03296 0.03619 0.04191 1.18% StateData::FillBoundary(geom) 41 0.03288 0.03607 0.04181 1.18% Castro::construct_new_source() 50 0.02929 0.03349 0.0384 1.08% Castro::post_init() 1 0.03233 0.03358 0.03413 0.96% Castro::construct_new_gravity_source() 10 0.02307 0.02717 0.03204 0.90% Gravity::interpolate_monopole_grav() 21 0.02787 0.02863 0.03183 0.90% Amr::writePlotFile() 2 0.02669 0.02687 0.02712 0.76% VisMF::Write(FabArray) 2 0.01382 0.01433 0.01697 0.48% Castro::apply_source_to_state() 20 0.01391 0.01553 0.01688 0.48% FabArray::Saxpy() 20 0.01387 0.01549 0.01684 0.47% Castro::post_timestep() 10 0.01557 0.01595 0.0162 0.46% Castro::Castro() 1 0.01122 0.01227 0.01532 0.43% FabArray::setDomainBndry() 41 0.009196 0.0121 0.01392 0.39% Castro::check_for_nan() 20 0.0105 0.01137 0.01222 0.34% MultiFab::contains_nan() 20 0.01048 0.01134 0.0122 0.34% Castro::construct_old_source() 50 0.009135 0.01108 0.01173 0.33% Castro::construct_old_gravity_source() 10 0.009085 0.01102 0.01166 0.33% Castro::initMFs() 1 0.007002 0.008021 0.01104 0.31% Castro::computeNewDt() 9 0.008668 0.008674 0.008679 0.24% AmrLevel::AmrLevel(dm) 1 0.005787 0.006499 0.008575 0.24% StateData::define() 4 0.005774 0.006481 0.008547 0.24% Castro::enforce_min_density() 62 0.00579 0.006087 0.006263 0.18% Castro::swap_state_time_levels() 10 0.003513 0.004798 0.005253 0.15% Castro::finalize_advance() 10 0.003038 0.003856 0.004689 0.13% Castro::post_regrid() 1 0.001562 0.00196 0.003064 0.09% Castro::buildMetrics() 1 0.001748 0.00199 0.002657 0.07% Castro::finalize_do_advance() 10 0.001663 0.001976 0.00225 0.06% Amr::InitAmr() 1 0.0002876 0.0003643 0.0005186 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.447e-05 0.0001919 0.0002797 0.01% DistributionMapping::LeastUsedCPUs() 1 8.621e-06 0.0001851 0.0002715 0.01% Castro::enforce_consistent_e() 1 7.682e-05 0.0001123 0.000194 0.01% FabArrayBase::getCPC() 41 5.753e-05 7.504e-05 0.0001002 0.00% Amr::writeSmallPlotFile() 1 2.644e-05 4.971e-05 6.365e-05 0.00% FabArrayBase::CPC::define() 2 2.009e-05 2.586e-05 3.584e-05 0.00% Castro::enforce_speed_limit() 62 2.379e-05 2.622e-05 2.904e-05 0.00% Gravity::swapTimeLevels() 10 1.062e-05 1.478e-05 1.708e-05 0.00% Castro::FluxRegCrseInit 10 7.502e-06 1.141e-05 1.691e-05 0.00% Amr::initSubcycle() 1 9.025e-06 1.136e-05 1.639e-05 0.00% Gravity::set_mass_offset() 10 9.241e-06 1.115e-05 1.273e-05 0.00% Castro::create_source_corrector() 10 8.092e-06 8.854e-06 1.04e-05 0.00% Castro::retry_advance_ctu() 10 4.541e-06 5.838e-06 7.615e-06 0.00% Castro::FluxRegFineAdd() 10 2.03e-06 2.155e-06 2.31e-06 0.00% DistributionMapping::Distribute() 1 8.37e-07 1.184e-06 1.679e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-5-ga2a22dabc2c4) finalized