MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-3-g572f226f4c98) initialized Starting run at 05:30:56 UTC on 2023-06-05. Successfully read inputs file ... Castro git describe: 23.06-8-g36dd1a76e AMReX git describe: 23.06-3-g572f226f4 Microphysics git describe: 23.06-2-g726fe1e2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016746166 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368792255 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.380615953 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.354814824 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.417112343 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.441826682 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.354285537 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.325226983 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317202428 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.323296339 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31888936 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010748242 seconds Ending run at 05:30:59 UTC on 2023-06-05. Run time = 3.804116675 Run time without initialization = 3.61977338 Average number of zones advanced per microsecond: 0.724 Average number of zones advanced per microsecond per rank: 0.091 TinyProfiler total time across processes [min...avg...max]: 3.803 ... 3.804 ... 3.804 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3145 2.4085 2.5910 68.11% Gravity::make_radial_gravity() 21 0.3537 0.3677 0.3871 10.18% check_for_negative_density() 10 0.04596 0.2334 0.3304 8.69% Castro::estTimeStep() 21 0.02741 0.07758 0.1193 3.14% Castro::initData() 1 0.04651 0.08105 0.1143 3.00% FabArray::ParallelCopy_finish() 41 0.04214 0.05575 0.08839 2.32% amrex::Copy() 193 0.06008 0.07305 0.08256 2.17% FabArray::setVal() 143 0.0607 0.06715 0.07733 2.03% Castro::reset_internal_energy(Fab) 1008 0.04913 0.05104 0.05635 1.48% Castro::normalize_species() 62 0.04136 0.0428 0.0465 1.22% FabArray::ParallelCopy_nowait() 41 0.03684 0.04256 0.04408 1.16% StateData::FillBoundary(geom) 41 0.03512 0.03778 0.04255 1.12% FillPatchIterator::Initialize 41 0.02972 0.03507 0.03745 0.98% Castro::construct_new_gravity_source() 10 0.02256 0.02617 0.03414 0.90% Gravity::interpolate_monopole_grav() 21 0.02813 0.0287 0.0306 0.80% Castro::computeTemp() 63 0.01965 0.02068 0.02306 0.61% Castro::initialize_do_advance() 10 0.01218 0.01796 0.01973 0.52% VisMF::Write(FabArray) 2 0.01351 0.01452 0.01778 0.47% FabArray::Saxpy() 20 0.01252 0.01375 0.01474 0.39% Castro::initialize_advance() 10 0.004561 0.01033 0.01446 0.38% Amr::writePlotFile() 2 0.007489 0.01094 0.01332 0.35% FabArray::setDomainBndry() 41 0.008965 0.01184 0.01296 0.34% MultiFab::contains_nan() 20 0.01027 0.01129 0.01266 0.33% Castro::construct_old_gravity_source() 10 0.00737 0.01021 0.01104 0.29% Castro::initMFs() 1 0.007067 0.007582 0.008455 0.22% StateData::define() 4 0.005938 0.006244 0.006714 0.18% Castro::construct_new_source() 50 0.006141 0.006281 0.006671 0.18% Castro::enforce_min_density() 62 0.005902 0.006087 0.006277 0.16% main() 1 0.005413 0.005867 0.006223 0.16% Castro::swap_state_time_levels() 10 0.003595 0.004716 0.005419 0.14% Amr::coarseTimeStep() 10 0.001695 0.003941 0.004704 0.12% Gravity::get_new_grav_vector() 11 0.002931 0.003719 0.004094 0.11% Gravity::get_old_grav_vector() 10 0.001664 0.002464 0.002824 0.07% Castro::finalize_do_advance() 10 0.0005764 0.00162 0.002019 0.05% Castro::buildMetrics() 1 0.001681 0.001785 0.001951 0.05% Castro::expand_state() 10 0.0006828 0.0009278 0.001172 0.03% Amr::timeStep() 10 0.0002172 0.0002728 0.0005044 0.01% Amr::InitAmr() 1 0.0002776 0.0003141 0.0004811 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002805 0.0003045 0.0003716 0.01% Castro::do_advance_ctu() 10 0.0002137 0.0002522 0.0002753 0.01% DistributionMapping::LeastUsedCPUs() 1 7.435e-06 0.0001732 0.0002073 0.01% Castro::clean_state() 62 0.0001384 0.0001572 0.0001843 0.00% StateDataPhysBCFunct::() 41 8.471e-05 9.903e-05 0.0001277 0.00% Castro::finalize_advance() 10 9.645e-05 0.0001067 0.0001215 0.00% Castro::enforce_consistent_e() 1 8.86e-05 9.83e-05 0.000121 0.00% Castro::do_new_sources() 10 5.042e-05 6.826e-05 0.0001038 0.00% FabArray::ParallelCopy() 41 7.079e-05 8.1e-05 9.972e-05 0.00% Amr::FinalizeInit() 1 4.468e-06 1.645e-05 9.264e-05 0.00% FillPatchSingleLevel 41 6.92e-05 7.595e-05 9.036e-05 0.00% Castro::Castro() 1 6.104e-05 6.956e-05 8.38e-05 0.00% Castro::construct_old_source() 50 5.071e-05 7.122e-05 8.042e-05 0.00% FabArrayBase::getCPC() 41 4.167e-05 5.599e-05 7.462e-05 0.00% Castro::do_old_sources() 10 4.49e-05 6.381e-05 6.938e-05 0.00% Amr::writeSmallPlotFile() 1 2.807e-05 4.474e-05 6.295e-05 0.00% Castro::advance() 10 4.177e-05 4.728e-05 6.053e-05 0.00% Amr::defBaseLevel() 1 2.467e-05 4.714e-05 5.947e-05 0.00% Castro::subcycle_advance_ctu() 10 3.817e-05 4.609e-05 5.695e-05 0.00% Castro::apply_source_to_state() 20 3.782e-05 4.673e-05 5.598e-05 0.00% Castro::construct_new_gravity() 10 3.703e-05 4.428e-05 5.469e-05 0.00% Castro::construct_old_gravity() 10 3.61e-05 4.158e-05 5.01e-05 0.00% FabArrayBase::CPC::define() 2 2.061e-05 2.603e-05 3.338e-05 0.00% Castro::enforce_speed_limit() 62 2.328e-05 2.688e-05 3.18e-05 0.00% Castro::check_for_nan() 20 2.068e-05 2.357e-05 2.833e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.414e-05 1.717e-05 2.683e-05 0.00% Castro::post_timestep() 10 1.424e-05 1.608e-05 1.81e-05 0.00% Gravity::swapTimeLevels() 10 1.175e-05 1.416e-05 1.651e-05 0.00% Gravity::set_mass_offset() 10 1.055e-05 1.324e-05 1.545e-05 0.00% Castro::computeNewDt() 9 9.008e-06 1.069e-05 1.356e-05 0.00% Castro::create_source_corrector() 10 7.183e-06 9.661e-06 1.116e-05 0.00% Amr::initSubcycle() 1 9.741e-06 1.009e-05 1.07e-05 0.00% Castro::FluxRegCrseInit 10 7.983e-06 8.943e-06 1.017e-05 0.00% Castro::retry_advance_ctu() 10 4.472e-06 5.96e-06 7.49e-06 0.00% Castro::post_regrid() 1 1.887e-06 3.859e-06 7.305e-06 0.00% Castro::computeInitialDt() 2 4.547e-06 5.322e-06 6.962e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.679e-06 4.99e-06 6.892e-06 0.00% Amr::InitializeInit() 1 2.228e-06 2.803e-06 5.309e-06 0.00% Castro::post_init() 1 2.982e-06 3.781e-06 5.13e-06 0.00% Castro::FluxRegFineAdd() 10 2.03e-06 2.289e-06 2.515e-06 0.00% Amr::init() 1 1.866e-06 2.172e-06 2.47e-06 0.00% Amr::initialInit() 1 1.486e-06 1.803e-06 2.368e-06 0.00% DistributionMapping::Distribute() 1 8.97e-07 1.255e-06 1.657e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.803 3.804 3.804 100.00% Amr::coarseTimeStep() 10 3.603 3.603 3.603 94.71% Amr::timeStep() 10 3.586 3.587 3.589 94.35% Castro::advance() 10 3.57 3.57 3.571 93.86% Castro::subcycle_advance_ctu() 10 3.489 3.496 3.503 92.09% Castro::do_advance_ctu() 10 3.489 3.496 3.503 92.09% Castro::construct_ctu_hydro_source() 10 2.314 2.408 2.591 68.11% Gravity::make_radial_gravity() 21 0.3701 0.3846 0.4005 10.53% check_for_negative_density() 10 0.04596 0.2334 0.3304 8.69% Gravity::get_new_grav_vector() 11 0.2509 0.2545 0.257 6.76% Castro::construct_old_gravity() 10 0.2079 0.2176 0.2302 6.05% Gravity::get_old_grav_vector() 10 0.2073 0.2169 0.2296 6.03% Castro::construct_new_gravity() 10 0.2247 0.2276 0.2295 6.03% FillPatchIterator::Initialize 41 0.1696 0.1833 0.1998 5.25% Amr::init() 1 0.1837 0.1839 0.1839 4.83% Castro::initialize_do_advance() 10 0.1653 0.1733 0.1791 4.71% Amr::initialInit() 1 0.1661 0.1667 0.167 4.39% FillPatchSingleLevel 41 0.1206 0.1364 0.1611 4.23% Amr::InitializeInit() 1 0.07009 0.1034 0.136 3.58% Amr::defBaseLevel() 1 0.07009 0.1034 0.136 3.57% Castro::clean_state() 62 0.1174 0.1201 0.1317 3.46% Castro::expand_state() 10 0.1153 0.1245 0.1296 3.41% FabArray::ParallelCopy() 41 0.08527 0.09848 0.1254 3.30% Castro::estTimeStep() 21 0.02741 0.07758 0.1193 3.14% Castro::initData() 1 0.05071 0.08526 0.1186 3.12% Amr::FinalizeInit() 1 0.03083 0.06334 0.09636 2.53% FabArray::ParallelCopy_finish() 41 0.04214 0.05575 0.08839 2.32% Castro::do_new_sources() 10 0.05948 0.06682 0.08369 2.20% amrex::Copy() 193 0.06008 0.07305 0.08256 2.17% Castro::computeTemp() 63 0.06964 0.07203 0.07978 2.10% Castro::initialize_advance() 10 0.06245 0.07058 0.07777 2.04% FabArray::setVal() 143 0.0607 0.06715 0.07733 2.03% Castro::computeInitialDt() 2 0.00313 0.03572 0.06902 1.81% Castro::reset_internal_energy(MultiFab) 63 0.04942 0.05135 0.05672 1.49% Castro::reset_internal_energy(Fab) 1008 0.04913 0.05104 0.05635 1.48% Castro::do_old_sources() 10 0.03923 0.04491 0.04711 1.24% Castro::normalize_species() 62 0.04136 0.0428 0.0465 1.22% FabArray::ParallelCopy_nowait() 41 0.03694 0.04265 0.04416 1.16% StateDataPhysBCFunct::() 41 0.03524 0.03788 0.04265 1.12% StateData::FillBoundary(geom) 41 0.03512 0.03778 0.04255 1.12% Castro::construct_new_source() 50 0.02881 0.03245 0.04081 1.07% Castro::construct_new_gravity_source() 10 0.02256 0.02617 0.03414 0.90% Gravity::interpolate_monopole_grav() 21 0.02813 0.0287 0.0306 0.80% Amr::writePlotFile() 2 0.02774 0.02799 0.0286 0.75% Castro::post_init() 1 0.02756 0.02808 0.02841 0.75% Castro::post_timestep() 10 0.01569 0.01652 0.0186 0.49% VisMF::Write(FabArray) 2 0.01351 0.01452 0.01778 0.47% Castro::apply_source_to_state() 20 0.01257 0.0138 0.01479 0.39% FabArray::Saxpy() 20 0.01252 0.01375 0.01474 0.39% FabArray::setDomainBndry() 41 0.008965 0.01184 0.01296 0.34% Castro::check_for_nan() 20 0.01029 0.01132 0.01269 0.33% MultiFab::contains_nan() 20 0.01027 0.01129 0.01266 0.33% Castro::Castro() 1 0.01105 0.01162 0.01246 0.33% Castro::construct_old_source() 50 0.00742 0.01028 0.01112 0.29% Castro::construct_old_gravity_source() 10 0.00737 0.01021 0.01104 0.29% Castro::computeNewDt() 9 0.009744 0.009763 0.009774 0.26% Castro::initMFs() 1 0.007067 0.007582 0.008455 0.22% AmrLevel::AmrLevel(dm) 1 0.005953 0.006261 0.006741 0.18% StateData::define() 4 0.005938 0.006244 0.006714 0.18% Castro::enforce_min_density() 62 0.005902 0.006087 0.006277 0.16% Castro::swap_state_time_levels() 10 0.003595 0.004716 0.005419 0.14% Castro::finalize_advance() 10 0.002973 0.003404 0.004063 0.11% Castro::buildMetrics() 1 0.001799 0.001917 0.002102 0.06% Castro::finalize_do_advance() 10 0.0005764 0.00162 0.002019 0.05% Castro::post_regrid() 1 0.001582 0.001695 0.00196 0.05% Amr::InitAmr() 1 0.0002875 0.0003242 0.0004918 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.32e-05 0.0001794 0.000215 0.01% DistributionMapping::LeastUsedCPUs() 1 7.435e-06 0.0001732 0.0002073 0.01% Castro::enforce_consistent_e() 1 8.86e-05 9.83e-05 0.000121 0.00% FabArrayBase::getCPC() 41 6.463e-05 8.203e-05 0.0001005 0.00% Amr::writeSmallPlotFile() 1 2.807e-05 4.474e-05 6.295e-05 0.00% FabArrayBase::CPC::define() 2 2.061e-05 2.603e-05 3.338e-05 0.00% Castro::enforce_speed_limit() 62 2.328e-05 2.688e-05 3.18e-05 0.00% Gravity::swapTimeLevels() 10 1.175e-05 1.416e-05 1.651e-05 0.00% Gravity::set_mass_offset() 10 1.055e-05 1.324e-05 1.545e-05 0.00% Castro::create_source_corrector() 10 7.183e-06 9.661e-06 1.116e-05 0.00% Amr::initSubcycle() 1 9.741e-06 1.009e-05 1.07e-05 0.00% Castro::FluxRegCrseInit 10 7.983e-06 8.943e-06 1.017e-05 0.00% Castro::retry_advance_ctu() 10 4.472e-06 5.96e-06 7.49e-06 0.00% Castro::FluxRegFineAdd() 10 2.03e-06 2.289e-06 2.515e-06 0.00% DistributionMapping::Distribute() 1 8.97e-07 1.255e-06 1.657e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 30 B 34 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-3-g572f226f4c98) finalized