MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-9-g5449a6981799) initialized Starting run at 11:53:16 UTC on 2023-06-06. Successfully read inputs file ... Castro git describe: 23.06-13-g521469d44 AMReX git describe: 23.06-9-g5449a6981 Microphysics git describe: 23.06-2-g726fe1e2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016290593 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369439768 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.361838005 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.348681901 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337195544 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.37180706 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336514165 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313835192 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31427661 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315254628 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317938804 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010250192 seconds Ending run at 11:53:20 UTC on 2023-06-06. Run time = 3.612634117 Run time without initialization = 3.404643312 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.612 ... 3.612 ... 3.613 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3031 2.3796 2.4581 68.04% Gravity::make_radial_gravity() 21 0.3254 0.3412 0.3612 10.00% check_for_negative_density() 10 0.01186 0.09558 0.1773 4.91% Castro::estTimeStep() 21 0.02106 0.08631 0.1392 3.85% Castro::initData() 1 0.03825 0.0831 0.1369 3.79% FabArray::ParallelCopy_finish() 41 0.03576 0.054 0.09214 2.55% amrex::Copy() 193 0.06032 0.07282 0.08246 2.28% FabArray::setVal() 143 0.05939 0.06787 0.07997 2.21% Castro::reset_internal_energy(Fab) 1008 0.04869 0.05045 0.05427 1.50% Castro::normalize_species() 62 0.04105 0.04186 0.04374 1.21% FabArray::ParallelCopy_nowait() 41 0.03521 0.04184 0.04366 1.21% StateData::FillBoundary(geom) 41 0.03233 0.03607 0.04105 1.14% FillPatchIterator::Initialize 41 0.02852 0.03441 0.03659 1.01% Gravity::interpolate_monopole_grav() 21 0.02852 0.02886 0.03011 0.83% Castro::construct_new_gravity_source() 10 0.02227 0.02494 0.02826 0.78% Castro::computeTemp() 63 0.01933 0.02034 0.02225 0.62% Castro::initialize_do_advance() 10 0.01164 0.01827 0.02175 0.60% VisMF::Write(FabArray) 2 0.01264 0.01391 0.01707 0.47% Castro::initialize_advance() 10 0.004064 0.01027 0.01447 0.40% FabArray::Saxpy() 20 0.01183 0.01357 0.0143 0.40% FabArray::setDomainBndry() 41 0.008573 0.01167 0.01302 0.36% Amr::writePlotFile() 2 0.006948 0.01036 0.01289 0.36% MultiFab::contains_nan() 20 0.009979 0.0108 0.01203 0.33% Castro::construct_old_gravity_source() 10 0.007177 0.01007 0.01095 0.30% Castro::initMFs() 1 0.006884 0.008054 0.01077 0.30% StateData::define() 4 0.005736 0.006568 0.008571 0.24% main() 1 0.005862 0.006489 0.006987 0.19% Gravity::get_new_grav_vector() 11 0.002922 0.004222 0.00638 0.18% Castro::enforce_min_density() 62 0.005574 0.005963 0.006263 0.17% Castro::construct_new_source() 50 0.005612 0.006083 0.006205 0.17% Castro::swap_state_time_levels() 10 0.003367 0.004533 0.00543 0.15% Amr::coarseTimeStep() 10 0.001292 0.002492 0.003126 0.09% Gravity::get_old_grav_vector() 10 0.001809 0.002528 0.002998 0.08% Castro::buildMetrics() 1 0.001635 0.001877 0.002441 0.07% Castro::finalize_do_advance() 10 0.0006605 0.001513 0.001793 0.05% Castro::expand_state() 10 0.0006587 0.0008566 0.0009861 0.03% Amr::InitAmr() 1 0.0002744 0.0003598 0.000658 0.02% DistributionMapping::LeastUsedCPUs() 1 7.923e-06 0.000338 0.0004305 0.01% Amr::timeStep() 10 0.0001807 0.0002387 0.0004056 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002874 0.0002951 0.0003052 0.01% Castro::do_advance_ctu() 10 0.0002212 0.0002413 0.0002681 0.01% Castro::clean_state() 62 0.0001364 0.0001459 0.0001561 0.00% Castro::finalize_advance() 10 8.623e-05 0.0001008 0.0001156 0.00% StateDataPhysBCFunct::() 41 7.829e-05 8.898e-05 0.0001083 0.00% Castro::enforce_consistent_e() 1 7.598e-05 9.027e-05 9.924e-05 0.00% FillPatchSingleLevel 41 6.761e-05 7.653e-05 9.31e-05 0.00% FabArray::ParallelCopy() 41 6.583e-05 7.588e-05 9.156e-05 0.00% Castro::Castro() 1 5.903e-05 7.116e-05 8.631e-05 0.00% Amr::FinalizeInit() 1 3.605e-06 1.454e-05 8.178e-05 0.00% FabArrayBase::getCPC() 41 4.428e-05 5.358e-05 7.853e-05 0.00% Castro::construct_old_source() 50 4.909e-05 6.342e-05 7.388e-05 0.00% Castro::do_new_sources() 10 5.149e-05 6.026e-05 6.983e-05 0.00% Amr::defBaseLevel() 1 3.595e-05 5.07e-05 6.756e-05 0.00% Castro::do_old_sources() 10 4.443e-05 6.011e-05 6.724e-05 0.00% Amr::writeSmallPlotFile() 1 2.526e-05 3.734e-05 6.338e-05 0.00% Castro::subcycle_advance_ctu() 10 4.078e-05 4.541e-05 5.348e-05 0.00% Castro::apply_source_to_state() 20 3.874e-05 4.471e-05 5.06e-05 0.00% Castro::construct_new_gravity() 10 3.391e-05 3.879e-05 4.903e-05 0.00% Castro::advance() 10 3.461e-05 3.96e-05 4.615e-05 0.00% Castro::construct_old_gravity() 10 3.517e-05 3.811e-05 4.048e-05 0.00% Castro::enforce_speed_limit() 62 2.457e-05 2.705e-05 3.373e-05 0.00% FabArrayBase::CPC::define() 2 2.122e-05 2.583e-05 2.963e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.256e-05 1.878e-05 2.713e-05 0.00% Castro::check_for_nan() 20 1.798e-05 2.191e-05 2.601e-05 0.00% Castro::computeNewDt() 9 7.999e-06 1.108e-05 2.566e-05 0.00% Castro::post_timestep() 10 1.303e-05 1.541e-05 1.815e-05 0.00% Gravity::swapTimeLevels() 10 1.279e-05 1.438e-05 1.791e-05 0.00% Amr::initSubcycle() 1 8.832e-06 1.105e-05 1.549e-05 0.00% Gravity::set_mass_offset() 10 9.214e-06 1.195e-05 1.426e-05 0.00% Castro::create_source_corrector() 10 6.879e-06 9.053e-06 1.031e-05 0.00% Castro::post_init() 1 2.786e-06 4.034e-06 1.021e-05 0.00% Castro::FluxRegCrseInit 10 7.497e-06 8.73e-06 1.004e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.138e-06 4.931e-06 7.36e-06 0.00% Amr::InitializeInit() 1 2.048e-06 2.995e-06 6.711e-06 0.00% Castro::post_regrid() 1 2.227e-06 3.42e-06 6.194e-06 0.00% Castro::retry_advance_ctu() 10 4.885e-06 5.405e-06 5.917e-06 0.00% Castro::computeInitialDt() 2 3.068e-06 3.783e-06 4.635e-06 0.00% Amr::init() 1 1.964e-06 2.119e-06 2.339e-06 0.00% Castro::FluxRegFineAdd() 10 1.806e-06 2.064e-06 2.292e-06 0.00% Amr::initialInit() 1 1.508e-06 1.785e-06 2.193e-06 0.00% DistributionMapping::Distribute() 1 8.74e-07 1.059e-06 1.443e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.612 3.612 3.613 100.00% Amr::coarseTimeStep() 10 3.388 3.388 3.388 93.77% Amr::timeStep() 10 3.375 3.375 3.376 93.46% Castro::advance() 10 3.359 3.359 3.359 92.99% Castro::subcycle_advance_ctu() 10 3.277 3.286 3.298 91.30% Castro::do_advance_ctu() 10 3.277 3.286 3.298 91.30% Castro::construct_ctu_hydro_source() 10 2.303 2.38 2.458 68.04% Gravity::make_radial_gravity() 21 0.3406 0.3581 0.3746 10.37% Gravity::get_new_grav_vector() 11 0.2321 0.2337 0.2354 6.52% Castro::construct_old_gravity() 10 0.1991 0.2093 0.2217 6.14% Gravity::get_old_grav_vector() 10 0.1983 0.2086 0.2211 6.12% Amr::init() 1 0.2071 0.2074 0.2075 5.74% Castro::construct_new_gravity() 10 0.2057 0.2065 0.2074 5.74% FillPatchIterator::Initialize 41 0.1644 0.1783 0.1971 5.46% Amr::initialInit() 1 0.1904 0.1909 0.1914 5.30% Castro::initialize_do_advance() 10 0.1607 0.1716 0.1796 4.97% check_for_negative_density() 10 0.01186 0.09558 0.1773 4.91% FillPatchSingleLevel 41 0.1193 0.1322 0.16 4.43% Amr::InitializeInit() 1 0.05943 0.1061 0.1598 4.42% Amr::defBaseLevel() 1 0.05943 0.1061 0.1598 4.42% Castro::initData() 1 0.0422 0.08707 0.141 3.90% Castro::estTimeStep() 21 0.02106 0.08631 0.1392 3.85% Amr::FinalizeInit() 1 0.03162 0.08487 0.1317 3.65% Castro::expand_state() 10 0.1101 0.1227 0.1315 3.64% FabArray::ParallelCopy() 41 0.07946 0.09599 0.1275 3.53% Castro::clean_state() 62 0.1142 0.1181 0.1257 3.48% Castro::computeInitialDt() 2 0.002336 0.05603 0.1027 2.84% FabArray::ParallelCopy_finish() 41 0.03576 0.054 0.09214 2.55% amrex::Copy() 193 0.06032 0.07282 0.08246 2.28% FabArray::setVal() 143 0.05939 0.06787 0.07997 2.21% Castro::initialize_advance() 10 0.05608 0.06961 0.07844 2.17% Castro::computeTemp() 63 0.06833 0.07108 0.07682 2.13% Castro::do_new_sources() 10 0.05904 0.06605 0.0765 2.12% Castro::reset_internal_energy(MultiFab) 63 0.049 0.05074 0.05457 1.51% Castro::reset_internal_energy(Fab) 1008 0.04869 0.05045 0.05427 1.50% Castro::do_old_sources() 10 0.03874 0.04469 0.04659 1.29% Castro::normalize_species() 62 0.04105 0.04186 0.04374 1.21% FabArray::ParallelCopy_nowait() 41 0.03532 0.04192 0.04373 1.21% StateDataPhysBCFunct::() 41 0.03242 0.03616 0.04113 1.14% StateData::FillBoundary(geom) 41 0.03233 0.03607 0.04105 1.14% Castro::construct_new_source() 50 0.02841 0.03102 0.03447 0.95% Gravity::interpolate_monopole_grav() 21 0.02852 0.02886 0.03011 0.83% Castro::post_init() 1 0.0281 0.02839 0.02858 0.79% Castro::construct_new_gravity_source() 10 0.02227 0.02494 0.02826 0.78% Amr::writePlotFile() 2 0.02641 0.02684 0.02724 0.75% VisMF::Write(FabArray) 2 0.01264 0.01391 0.01707 0.47% Castro::post_timestep() 10 0.0157 0.01602 0.01687 0.47% Castro::Castro() 1 0.01081 0.01201 0.01502 0.42% Castro::apply_source_to_state() 20 0.01187 0.01362 0.01435 0.40% FabArray::Saxpy() 20 0.01183 0.01357 0.0143 0.40% FabArray::setDomainBndry() 41 0.008573 0.01167 0.01302 0.36% Castro::check_for_nan() 20 0.009999 0.01082 0.01206 0.33% MultiFab::contains_nan() 20 0.009979 0.0108 0.01203 0.33% Castro::construct_old_source() 50 0.007226 0.01013 0.01103 0.31% Castro::construct_old_gravity_source() 10 0.007177 0.01007 0.01095 0.30% Castro::initMFs() 1 0.006884 0.008054 0.01077 0.30% Castro::computeNewDt() 9 0.008687 0.008712 0.008724 0.24% AmrLevel::AmrLevel(dm) 1 0.005755 0.006587 0.008598 0.24% StateData::define() 4 0.005736 0.006568 0.008571 0.24% Castro::enforce_min_density() 62 0.005574 0.005963 0.006263 0.17% Castro::swap_state_time_levels() 10 0.003367 0.004533 0.00543 0.15% Castro::finalize_advance() 10 0.003052 0.003511 0.004113 0.11% Castro::buildMetrics() 1 0.001754 0.002025 0.002653 0.07% Castro::post_regrid() 1 0.001527 0.00163 0.001934 0.05% Castro::finalize_do_advance() 10 0.0006605 0.001513 0.001793 0.05% Amr::InitAmr() 1 0.0002841 0.0003708 0.0006735 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.334e-05 0.000344 0.000439 0.01% DistributionMapping::LeastUsedCPUs() 1 7.923e-06 0.000338 0.0004305 0.01% FabArrayBase::getCPC() 41 7.036e-05 7.941e-05 0.0001082 0.00% Castro::enforce_consistent_e() 1 7.598e-05 9.027e-05 9.924e-05 0.00% Amr::writeSmallPlotFile() 1 2.526e-05 3.734e-05 6.338e-05 0.00% Castro::enforce_speed_limit() 62 2.457e-05 2.705e-05 3.373e-05 0.00% FabArrayBase::CPC::define() 2 2.122e-05 2.583e-05 2.963e-05 0.00% Gravity::swapTimeLevels() 10 1.279e-05 1.438e-05 1.791e-05 0.00% Amr::initSubcycle() 1 8.832e-06 1.105e-05 1.549e-05 0.00% Gravity::set_mass_offset() 10 9.214e-06 1.195e-05 1.426e-05 0.00% Castro::create_source_corrector() 10 6.879e-06 9.053e-06 1.031e-05 0.00% Castro::FluxRegCrseInit 10 7.497e-06 8.73e-06 1.004e-05 0.00% Castro::retry_advance_ctu() 10 4.885e-06 5.405e-06 5.917e-06 0.00% Castro::FluxRegFineAdd() 10 1.806e-06 2.064e-06 2.292e-06 0.00% DistributionMapping::Distribute() 1 8.74e-07 1.059e-06 1.443e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-9-g5449a6981799) finalized