MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-9-g5449a6981799) initialized Starting run at 05:41:39 UTC on 2023-06-06. Successfully read inputs file ... Castro git describe: 23.06-8-g36dd1a76e AMReX git describe: 23.06-9-g5449a6981 Microphysics git describe: 23.06-2-g726fe1e2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016122463 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.363430109 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.358743231 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.346410722 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331718663 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356918602 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347039656 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315292264 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314515008 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314502744 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316021809 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010511029 seconds Ending run at 05:41:43 UTC on 2023-06-06. Run time = 3.56769729 Run time without initialization = 3.382907932 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.567 ... 3.567 ... 3.568 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2913 2.3496 2.4076 67.48% Gravity::make_radial_gravity() 21 0.3252 0.3384 0.3453 9.68% check_for_negative_density() 10 0.01332 0.07096 0.1337 3.75% Castro::estTimeStep() 21 0.03306 0.07853 0.1294 3.63% Castro::initData() 1 0.03863 0.07756 0.1152 3.23% FabArray::setVal() 143 0.06459 0.07853 0.09477 2.66% amrex::Copy() 193 0.06962 0.07447 0.08275 2.32% FabArray::ParallelCopy_finish() 41 0.03311 0.05535 0.06846 1.92% Castro::reset_internal_energy(Fab) 1008 0.04727 0.04982 0.05243 1.47% Castro::normalize_species() 62 0.04076 0.04248 0.0458 1.28% FabArray::ParallelCopy_nowait() 41 0.04108 0.04259 0.04425 1.24% StateData::FillBoundary(geom) 41 0.03382 0.03804 0.04126 1.16% FillPatchIterator::Initialize 41 0.03078 0.03462 0.03865 1.08% Castro::construct_new_gravity_source() 10 0.02299 0.02816 0.03522 0.99% Gravity::interpolate_monopole_grav() 21 0.02734 0.02832 0.03096 0.87% Castro::initialize_do_advance() 10 0.01407 0.01851 0.02222 0.62% Castro::computeTemp() 63 0.01719 0.01997 0.02137 0.60% FabArray::Saxpy() 20 0.01407 0.01525 0.01692 0.47% VisMF::Write(FabArray) 2 0.01361 0.01418 0.01688 0.47% Castro::initialize_advance() 10 0.009702 0.01271 0.01582 0.44% MultiFab::contains_nan() 20 0.01157 0.01253 0.01355 0.38% FabArray::setDomainBndry() 41 0.009095 0.01154 0.01336 0.37% Castro::construct_old_gravity_source() 10 0.008967 0.01078 0.01135 0.32% Amr::writePlotFile() 2 0.00697 0.009842 0.01069 0.30% Castro::initMFs() 1 0.007249 0.007558 0.009194 0.26% main() 1 0.00581 0.006433 0.006989 0.20% StateData::define() 4 0.005922 0.006106 0.006732 0.19% Castro::construct_new_source() 50 0.006097 0.00631 0.006659 0.19% Castro::enforce_min_density() 62 0.005881 0.006206 0.006371 0.18% Amr::coarseTimeStep() 10 0.001044 0.003777 0.006223 0.17% Castro::swap_state_time_levels() 10 0.003542 0.004855 0.005056 0.14% Gravity::get_new_grav_vector() 11 0.002978 0.003628 0.00402 0.11% Gravity::get_old_grav_vector() 10 0.001759 0.002291 0.002654 0.07% Castro::finalize_do_advance() 10 0.001713 0.002055 0.002396 0.07% Castro::buildMetrics() 1 0.001657 0.001706 0.001941 0.05% Castro::expand_state() 10 0.0007802 0.0008979 0.0009719 0.03% Amr::InitAmr() 1 0.0002647 0.0003036 0.0004639 0.01% Amr::timeStep() 10 0.0001851 0.0002452 0.0004039 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002735 0.0002931 0.0003185 0.01% Castro::do_advance_ctu() 10 0.0001957 0.0002358 0.0002966 0.01% DistributionMapping::LeastUsedCPUs() 1 9.252e-06 0.000182 0.0002132 0.01% Castro::clean_state() 62 0.0001285 0.0001431 0.0001522 0.00% StateDataPhysBCFunct::() 41 8.313e-05 9.734e-05 0.0001255 0.00% Castro::finalize_advance() 10 8.339e-05 9.851e-05 0.000119 0.00% Castro::Castro() 1 6.392e-05 7.869e-05 0.0001026 0.00% Castro::enforce_consistent_e() 1 7.815e-05 8.533e-05 9.343e-05 0.00% Castro::construct_old_source() 50 4.236e-05 7.007e-05 8.077e-05 0.00% FillPatchSingleLevel 41 5.936e-05 6.727e-05 8.039e-05 0.00% FabArray::ParallelCopy() 41 6.289e-05 7.216e-05 7.974e-05 0.00% Amr::FinalizeInit() 1 3.984e-06 1.402e-05 7.738e-05 0.00% Castro::do_new_sources() 10 5.281e-05 5.988e-05 6.548e-05 0.00% FabArrayBase::getCPC() 41 3.812e-05 5.506e-05 6.534e-05 0.00% Castro::do_old_sources() 10 5.2e-05 5.777e-05 6.513e-05 0.00% Amr::writeSmallPlotFile() 1 2.535e-05 4.517e-05 6.263e-05 0.00% Castro::apply_source_to_state() 20 3.301e-05 4.528e-05 6.184e-05 0.00% Castro::subcycle_advance_ctu() 10 3.87e-05 4.797e-05 6.061e-05 0.00% Amr::defBaseLevel() 1 3.247e-05 4.822e-05 5.867e-05 0.00% Castro::advance() 10 3.113e-05 3.982e-05 5.391e-05 0.00% Castro::construct_old_gravity() 10 3.388e-05 4.034e-05 4.88e-05 0.00% Castro::construct_new_gravity() 10 3.535e-05 4.149e-05 4.752e-05 0.00% FabArrayBase::CPC::define() 2 2.248e-05 2.488e-05 3.053e-05 0.00% Castro::check_for_nan() 20 2.181e-05 2.444e-05 2.759e-05 0.00% Castro::enforce_speed_limit() 62 2.354e-05 2.507e-05 2.702e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.246e-05 1.787e-05 2.308e-05 0.00% Gravity::swapTimeLevels() 10 1.222e-05 1.639e-05 1.992e-05 0.00% Castro::post_timestep() 10 1.106e-05 1.495e-05 1.945e-05 0.00% Gravity::set_mass_offset() 10 9.898e-06 1.175e-05 1.4e-05 0.00% Castro::post_init() 1 3.373e-06 5.03e-06 1.365e-05 0.00% Castro::create_source_corrector() 10 6.823e-06 9.09e-06 1.237e-05 0.00% Castro::computeNewDt() 9 7.996e-06 9.562e-06 1.164e-05 0.00% Amr::initSubcycle() 1 8.933e-06 9.693e-06 1.056e-05 0.00% Castro::FluxRegCrseInit 10 7.206e-06 8.053e-06 9.526e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.916e-06 4.868e-06 7.798e-06 0.00% Castro::retry_advance_ctu() 10 3.449e-06 4.833e-06 5.46e-06 0.00% Castro::computeInitialDt() 2 4.039e-06 4.599e-06 5.404e-06 0.00% Amr::InitializeInit() 1 1.919e-06 2.682e-06 4.982e-06 0.00% Castro::post_regrid() 1 1.92e-06 3.399e-06 4.168e-06 0.00% Amr::init() 1 2.219e-06 2.48e-06 2.979e-06 0.00% Castro::FluxRegFineAdd() 10 1.787e-06 2.185e-06 2.592e-06 0.00% Amr::initialInit() 1 1.353e-06 1.811e-06 2.541e-06 0.00% DistributionMapping::Distribute() 1 8.69e-07 9.994e-07 1.303e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.567 3.567 3.568 100.00% Amr::coarseTimeStep() 10 3.366 3.366 3.366 94.33% Amr::timeStep() 10 3.349 3.351 3.354 94.01% Castro::advance() 10 3.334 3.335 3.336 93.52% Castro::subcycle_advance_ctu() 10 3.238 3.251 3.261 91.40% Castro::do_advance_ctu() 10 3.238 3.25 3.261 91.40% Castro::construct_ctu_hydro_source() 10 2.291 2.35 2.408 67.48% Gravity::make_radial_gravity() 21 0.3424 0.3554 0.3641 10.21% Gravity::get_new_grav_vector() 11 0.2329 0.2345 0.2359 6.61% Castro::construct_old_gravity() 10 0.1989 0.2096 0.2166 6.07% Gravity::get_old_grav_vector() 10 0.1976 0.2086 0.216 6.05% Castro::construct_new_gravity() 10 0.2068 0.2086 0.2106 5.90% FillPatchIterator::Initialize 41 0.1697 0.1825 0.2007 5.62% Castro::initialize_do_advance() 10 0.1593 0.1738 0.1881 5.27% Amr::init() 1 0.1841 0.1843 0.1844 5.17% Amr::initialInit() 1 0.1676 0.1679 0.1681 4.71% FillPatchSingleLevel 41 0.1189 0.1363 0.1515 4.25% Castro::expand_state() 10 0.1124 0.1246 0.1404 3.94% Amr::InitializeInit() 1 0.0608 0.09987 0.1385 3.88% Amr::defBaseLevel() 1 0.0608 0.09987 0.1385 3.88% check_for_negative_density() 10 0.01332 0.07096 0.1337 3.75% Castro::estTimeStep() 21 0.03306 0.07853 0.1294 3.63% Castro::clean_state() 62 0.111 0.118 0.1242 3.48% Castro::initData() 1 0.04283 0.08156 0.1186 3.33% FabArray::ParallelCopy() 41 0.07749 0.0981 0.1123 3.15% Amr::FinalizeInit() 1 0.02939 0.06801 0.1073 3.01% FabArray::setVal() 143 0.06459 0.07853 0.09477 2.66% Castro::initialize_advance() 10 0.07005 0.08078 0.09279 2.60% Castro::do_new_sources() 10 0.05885 0.07198 0.08777 2.46% amrex::Copy() 193 0.06962 0.07447 0.08275 2.32% Castro::computeInitialDt() 2 0.002055 0.04065 0.07975 2.24% Castro::computeTemp() 63 0.06474 0.07008 0.0741 2.08% FabArray::ParallelCopy_finish() 41 0.03311 0.05535 0.06846 1.92% Castro::reset_internal_energy(MultiFab) 63 0.04755 0.05011 0.05273 1.48% Castro::reset_internal_energy(Fab) 1008 0.04727 0.04982 0.05243 1.47% Castro::do_old_sources() 10 0.04551 0.04663 0.04739 1.33% Castro::normalize_species() 62 0.04076 0.04248 0.0458 1.28% FabArray::ParallelCopy_nowait() 41 0.04114 0.04267 0.04432 1.24% Castro::construct_new_source() 50 0.02909 0.03447 0.04188 1.17% StateDataPhysBCFunct::() 41 0.03391 0.03813 0.04134 1.16% StateData::FillBoundary(geom) 41 0.03382 0.03804 0.04126 1.16% Castro::construct_new_gravity_source() 10 0.02299 0.02816 0.03522 0.99% Gravity::interpolate_monopole_grav() 21 0.02734 0.02832 0.03096 0.87% Amr::writePlotFile() 2 0.02686 0.02702 0.02728 0.76% Castro::post_init() 1 0.02655 0.02677 0.02698 0.76% Castro::post_timestep() 10 0.01487 0.01606 0.01734 0.49% Castro::apply_source_to_state() 20 0.01412 0.01529 0.01696 0.48% FabArray::Saxpy() 20 0.01407 0.01525 0.01692 0.47% VisMF::Write(FabArray) 2 0.01361 0.01418 0.01688 0.47% Castro::check_for_nan() 20 0.01159 0.01255 0.01357 0.38% MultiFab::contains_nan() 20 0.01157 0.01253 0.01355 0.38% FabArray::setDomainBndry() 41 0.009095 0.01154 0.01336 0.37% Castro::Castro() 1 0.01169 0.01195 0.01284 0.36% Castro::construct_old_source() 50 0.009009 0.01085 0.01143 0.32% Castro::construct_old_gravity_source() 10 0.008967 0.01078 0.01135 0.32% Castro::computeNewDt() 9 0.009228 0.009234 0.009241 0.26% Castro::initMFs() 1 0.007249 0.007558 0.009194 0.26% AmrLevel::AmrLevel(dm) 1 0.005936 0.006124 0.006753 0.19% StateData::define() 4 0.005922 0.006106 0.006732 0.19% Castro::enforce_min_density() 62 0.005881 0.006206 0.006371 0.18% Castro::swap_state_time_levels() 10 0.003542 0.004855 0.005056 0.14% Castro::finalize_advance() 10 0.002876 0.003809 0.004999 0.14% Castro::finalize_do_advance() 10 0.001713 0.002055 0.002396 0.07% Castro::buildMetrics() 1 0.001781 0.001836 0.0021 0.06% Castro::post_regrid() 1 0.00156 0.001649 0.001719 0.05% Amr::InitAmr() 1 0.0002743 0.0003133 0.0004745 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.52e-05 0.0001878 0.0002223 0.01% DistributionMapping::LeastUsedCPUs() 1 9.252e-06 0.000182 0.0002132 0.01% FabArrayBase::getCPC() 41 6.298e-05 7.994e-05 9.588e-05 0.00% Castro::enforce_consistent_e() 1 7.815e-05 8.533e-05 9.343e-05 0.00% Amr::writeSmallPlotFile() 1 2.535e-05 4.517e-05 6.263e-05 0.00% FabArrayBase::CPC::define() 2 2.248e-05 2.488e-05 3.053e-05 0.00% Castro::enforce_speed_limit() 62 2.354e-05 2.507e-05 2.702e-05 0.00% Gravity::swapTimeLevels() 10 1.222e-05 1.639e-05 1.992e-05 0.00% Gravity::set_mass_offset() 10 9.898e-06 1.175e-05 1.4e-05 0.00% Castro::create_source_corrector() 10 6.823e-06 9.09e-06 1.237e-05 0.00% Amr::initSubcycle() 1 8.933e-06 9.693e-06 1.056e-05 0.00% Castro::FluxRegCrseInit 10 7.206e-06 8.053e-06 9.526e-06 0.00% Castro::retry_advance_ctu() 10 3.449e-06 4.833e-06 5.46e-06 0.00% Castro::FluxRegFineAdd() 10 1.787e-06 2.185e-06 2.592e-06 0.00% DistributionMapping::Distribute() 1 8.69e-07 9.994e-07 1.303e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-9-g5449a6981799) finalized