MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-12-g1f3afaa42d0d) initialized Starting run at 13:39:49 UTC on 2023-06-07. Successfully read inputs file ... Castro git describe: 23.06-15-g6774e3a7f AMReX git describe: 23.06-12-g1f3afaa42 Microphysics git describe: 23.06-4-g775efe11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016623905 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.377123138 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.35386031 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338942114 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339787476 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.377086724 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345895002 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315206248 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315786029 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315475725 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315081357 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010212944 seconds Ending run at 13:39:53 UTC on 2023-06-07. Run time = 3.600356048 Run time without initialization = 3.412104741 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.599 ... 3.6 ... 3.6 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2934 2.3659 2.4423 67.83% Gravity::make_radial_gravity() 21 0.3239 0.3359 0.3454 9.59% check_for_negative_density() 10 0.02378 0.1038 0.1799 5.00% Castro::initData() 1 0.04103 0.0803 0.1165 3.24% Castro::estTimeStep() 21 0.02518 0.06853 0.09979 2.77% FabArray::setVal() 143 0.06465 0.07582 0.08758 2.43% amrex::Copy() 193 0.0683 0.07566 0.0847 2.35% FabArray::ParallelCopy_finish() 41 0.03685 0.05217 0.06344 1.76% Castro::reset_internal_energy(Fab) 1008 0.04964 0.05068 0.05197 1.44% FabArray::ParallelCopy_nowait() 41 0.04014 0.04315 0.04453 1.24% Castro::normalize_species() 62 0.04128 0.04206 0.04344 1.21% StateData::FillBoundary(geom) 41 0.03337 0.03587 0.03964 1.10% FillPatchIterator::Initialize 41 0.0299 0.03595 0.03871 1.08% Castro::construct_new_gravity_source() 10 0.02341 0.02615 0.03044 0.85% Gravity::interpolate_monopole_grav() 21 0.02863 0.02927 0.02987 0.83% Castro::initialize_do_advance() 10 0.01234 0.01878 0.0221 0.61% Castro::computeTemp() 63 0.01942 0.02015 0.02085 0.58% VisMF::Write(FabArray) 2 0.01341 0.01407 0.01718 0.48% Castro::initialize_advance() 10 0.009731 0.01263 0.01598 0.44% FabArray::Saxpy() 20 0.0137 0.01492 0.01582 0.44% FabArray::setDomainBndry() 41 0.009466 0.01202 0.01311 0.36% MultiFab::contains_nan() 20 0.01093 0.01132 0.01201 0.33% Castro::construct_old_gravity_source() 10 0.008993 0.01084 0.01147 0.32% Amr::writePlotFile() 2 0.006948 0.01 0.01074 0.30% Castro::initMFs() 1 0.007076 0.007603 0.008493 0.24% main() 1 0.005621 0.006556 0.006982 0.19% Castro::enforce_min_density() 62 0.005846 0.006151 0.006698 0.19% StateData::define() 4 0.00572 0.006056 0.00664 0.18% Castro::construct_new_source() 50 0.006308 0.006422 0.006608 0.18% Gravity::get_new_grav_vector() 11 0.003045 0.004352 0.006436 0.18% Castro::swap_state_time_levels() 10 0.003528 0.00485 0.005581 0.16% Gravity::get_old_grav_vector() 10 0.00186 0.002449 0.003037 0.08% Amr::coarseTimeStep() 10 0.001642 0.002242 0.002964 0.08% Castro::finalize_do_advance() 10 0.001666 0.001953 0.002231 0.06% Castro::buildMetrics() 1 0.001683 0.001767 0.001903 0.05% Castro::expand_state() 10 0.0007553 0.0009204 0.001076 0.03% Amr::timeStep() 10 0.000222 0.000259 0.0004337 0.01% Amr::InitAmr() 1 0.0002667 0.0003059 0.0004097 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002792 0.0002912 0.000298 0.01% Castro::do_advance_ctu() 10 0.0001841 0.0002212 0.0002583 0.01% Castro::clean_state() 62 0.0001251 0.0001507 0.000179 0.00% StateDataPhysBCFunct::() 41 7.632e-05 0.000102 0.0001401 0.00% DistributionMapping::LeastUsedCPUs() 1 8.048e-06 0.0001044 0.0001375 0.00% Castro::finalize_advance() 10 8.472e-05 0.0001012 0.0001128 0.00% Castro::enforce_consistent_e() 1 7.367e-05 8.902e-05 0.0001063 0.00% FabArray::ParallelCopy() 41 6.375e-05 7.314e-05 8.248e-05 0.00% Castro::construct_old_source() 50 5.138e-05 6.977e-05 7.967e-05 0.00% Castro::do_new_sources() 10 4.854e-05 6.861e-05 7.813e-05 0.00% FabArrayBase::getCPC() 41 4.212e-05 6.195e-05 7.808e-05 0.00% FillPatchSingleLevel 41 5.897e-05 7.054e-05 7.788e-05 0.00% Castro::Castro() 1 5.952e-05 6.582e-05 7.785e-05 0.00% Amr::FinalizeInit() 1 3.757e-06 1.454e-05 7.684e-05 0.00% Castro::do_old_sources() 10 5.436e-05 6.404e-05 7.061e-05 0.00% Amr::writeSmallPlotFile() 1 2.555e-05 5.266e-05 6.631e-05 0.00% Castro::subcycle_advance_ctu() 10 4.394e-05 4.938e-05 5.781e-05 0.00% Castro::apply_source_to_state() 20 3.457e-05 4.747e-05 5.721e-05 0.00% Amr::defBaseLevel() 1 3.424e-05 4.231e-05 4.965e-05 0.00% Castro::construct_old_gravity() 10 3.731e-05 4.268e-05 4.954e-05 0.00% Castro::construct_new_gravity() 10 3.487e-05 3.948e-05 4.64e-05 0.00% Castro::advance() 10 3.481e-05 4.192e-05 4.546e-05 0.00% Castro::enforce_speed_limit() 62 2.249e-05 2.807e-05 3.369e-05 0.00% FabArrayBase::CPC::define() 2 2.042e-05 2.506e-05 3.142e-05 0.00% Castro::check_for_nan() 20 1.997e-05 2.323e-05 2.698e-05 0.00% Gravity::swapTimeLevels() 10 1.218e-05 1.633e-05 2.323e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.46e-05 1.806e-05 1.987e-05 0.00% Castro::post_timestep() 10 1.229e-05 1.475e-05 1.867e-05 0.00% Gravity::set_mass_offset() 10 9.824e-06 1.184e-05 1.349e-05 0.00% Castro::computeNewDt() 9 8.264e-06 9.865e-06 1.136e-05 0.00% Castro::create_source_corrector() 10 8.118e-06 9.45e-06 1.114e-05 0.00% Amr::initSubcycle() 1 8.85e-06 9.697e-06 1.054e-05 0.00% Castro::FluxRegCrseInit 10 6.784e-06 8.993e-06 1.02e-05 0.00% Castro::post_init() 1 2.852e-06 5.126e-06 1.015e-05 0.00% Amr::init() 1 2.006e-06 2.996e-06 8.353e-06 0.00% Castro::retry_advance_ctu() 10 6.508e-06 7.582e-06 8.291e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.211e-06 5.548e-06 7.183e-06 0.00% Castro::computeInitialDt() 2 3.005e-06 4.018e-06 5.273e-06 0.00% Amr::InitializeInit() 1 2e-06 2.474e-06 4.81e-06 0.00% Castro::post_regrid() 1 1.6e-06 3.103e-06 4.616e-06 0.00% Castro::FluxRegFineAdd() 10 1.882e-06 2.298e-06 2.846e-06 0.00% Amr::initialInit() 1 1.596e-06 1.756e-06 2.203e-06 0.00% DistributionMapping::Distribute() 1 9.31e-07 1.19e-06 1.468e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.599 3.6 3.6 100.00% Amr::coarseTimeStep() 10 3.395 3.395 3.395 94.30% Amr::timeStep() 10 3.382 3.383 3.384 93.98% Castro::advance() 10 3.366 3.367 3.368 93.54% Castro::subcycle_advance_ctu() 10 3.277 3.286 3.292 91.44% Castro::do_advance_ctu() 10 3.277 3.286 3.292 91.44% Castro::construct_ctu_hydro_source() 10 2.293 2.366 2.442 67.83% Gravity::make_radial_gravity() 21 0.3403 0.3532 0.3639 10.11% Gravity::get_new_grav_vector() 11 0.2275 0.2326 0.2348 6.52% Castro::construct_old_gravity() 10 0.1984 0.2068 0.2143 5.95% Gravity::get_old_grav_vector() 10 0.1976 0.2061 0.2137 5.94% Castro::construct_new_gravity() 10 0.2007 0.2048 0.2064 5.73% Castro::initialize_do_advance() 10 0.1671 0.1818 0.1931 5.36% FillPatchIterator::Initialize 41 0.1606 0.1795 0.192 5.33% Amr::init() 1 0.1877 0.1878 0.1878 5.22% check_for_negative_density() 10 0.02378 0.1038 0.1799 5.00% Amr::initialInit() 1 0.1708 0.1711 0.1714 4.76% FillPatchSingleLevel 41 0.1201 0.1315 0.1405 3.90% Amr::InitializeInit() 1 0.06219 0.1022 0.1393 3.87% Amr::defBaseLevel() 1 0.06219 0.1021 0.1393 3.87% Castro::expand_state() 10 0.1077 0.1247 0.1358 3.77% Castro::clean_state() 62 0.1168 0.1185 0.1216 3.38% Castro::initData() 1 0.04525 0.08434 0.1203 3.34% Amr::FinalizeInit() 1 0.03166 0.06891 0.1087 3.02% FabArray::ParallelCopy() 41 0.08154 0.09549 0.1038 2.88% Castro::estTimeStep() 21 0.02518 0.06853 0.09979 2.77% FabArray::setVal() 143 0.06465 0.07582 0.08758 2.43% Castro::initialize_advance() 10 0.07124 0.07769 0.08578 2.38% amrex::Copy() 193 0.0683 0.07566 0.0847 2.35% Castro::computeInitialDt() 2 0.002152 0.03937 0.07922 2.20% Castro::do_new_sources() 10 0.06124 0.06957 0.07871 2.19% Castro::computeTemp() 63 0.07013 0.07111 0.07231 2.01% FabArray::ParallelCopy_finish() 41 0.03685 0.05217 0.06344 1.76% Castro::reset_internal_energy(MultiFab) 63 0.04993 0.05097 0.05226 1.45% Castro::reset_internal_energy(Fab) 1008 0.04964 0.05068 0.05197 1.44% Castro::do_old_sources() 10 0.04523 0.04695 0.04777 1.33% FabArray::ParallelCopy_nowait() 41 0.04024 0.04324 0.04462 1.24% Castro::normalize_species() 62 0.04128 0.04206 0.04344 1.21% StateDataPhysBCFunct::() 41 0.03345 0.03597 0.03973 1.10% StateData::FillBoundary(geom) 41 0.03337 0.03587 0.03964 1.10% Castro::construct_new_source() 50 0.02981 0.03257 0.03674 1.02% Castro::finalize_do_advance() 10 0.0138 0.02274 0.03205 0.89% Castro::construct_new_gravity_source() 10 0.02341 0.02615 0.03044 0.85% Gravity::interpolate_monopole_grav() 21 0.02863 0.02927 0.02987 0.83% Castro::post_init() 1 0.02886 0.02908 0.02942 0.82% Amr::writePlotFile() 2 0.0267 0.02699 0.02729 0.76% VisMF::Write(FabArray) 2 0.01341 0.01407 0.01718 0.48% Castro::post_timestep() 10 0.01567 0.01586 0.01604 0.45% Castro::apply_source_to_state() 20 0.01375 0.01496 0.01585 0.44% FabArray::Saxpy() 20 0.0137 0.01492 0.01582 0.44% FabArray::setDomainBndry() 41 0.009466 0.01202 0.01311 0.36% Castro::Castro() 1 0.01108 0.01158 0.01234 0.34% Castro::check_for_nan() 20 0.01095 0.01134 0.01203 0.33% MultiFab::contains_nan() 20 0.01093 0.01132 0.01201 0.33% Castro::construct_old_source() 50 0.009067 0.01091 0.01155 0.32% Castro::construct_old_gravity_source() 10 0.008993 0.01084 0.01147 0.32% Castro::initMFs() 1 0.007076 0.007603 0.008493 0.24% Castro::computeNewDt() 9 0.008383 0.008388 0.008395 0.23% Castro::enforce_min_density() 62 0.005846 0.006151 0.006698 0.19% AmrLevel::AmrLevel(dm) 1 0.00574 0.006074 0.00666 0.18% StateData::define() 4 0.00572 0.006056 0.00664 0.18% Castro::swap_state_time_levels() 10 0.003528 0.00485 0.005581 0.16% Castro::finalize_advance() 10 0.00315 0.003653 0.004581 0.13% Castro::buildMetrics() 1 0.001803 0.0019 0.002057 0.06% Castro::post_regrid() 1 0.001566 0.001654 0.001988 0.06% Amr::InitAmr() 1 0.0002755 0.0003156 0.0004186 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.319e-05 0.0001111 0.000146 0.00% DistributionMapping::LeastUsedCPUs() 1 8.048e-06 0.0001044 0.0001375 0.00% Castro::enforce_consistent_e() 1 7.367e-05 8.902e-05 0.0001063 0.00% FabArrayBase::getCPC() 41 6.537e-05 8.701e-05 0.0001032 0.00% Amr::writeSmallPlotFile() 1 2.555e-05 5.266e-05 6.631e-05 0.00% Castro::enforce_speed_limit() 62 2.249e-05 2.807e-05 3.369e-05 0.00% FabArrayBase::CPC::define() 2 2.042e-05 2.506e-05 3.142e-05 0.00% Gravity::swapTimeLevels() 10 1.218e-05 1.633e-05 2.323e-05 0.00% Gravity::set_mass_offset() 10 9.824e-06 1.184e-05 1.349e-05 0.00% Castro::create_source_corrector() 10 8.118e-06 9.45e-06 1.114e-05 0.00% Amr::initSubcycle() 1 8.85e-06 9.697e-06 1.054e-05 0.00% Castro::FluxRegCrseInit 10 6.784e-06 8.993e-06 1.02e-05 0.00% Castro::retry_advance_ctu() 10 6.508e-06 7.582e-06 8.291e-06 0.00% Castro::FluxRegFineAdd() 10 1.882e-06 2.298e-06 2.846e-06 0.00% DistributionMapping::Distribute() 1 9.31e-07 1.19e-06 1.468e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-12-g1f3afaa42d0d) finalized