MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-12-g1f3afaa42d0d) initialized Starting run at 16:35:14 UTC on 2023-06-07. Successfully read inputs file ... Castro git describe: 23.06-14-g648748dfc AMReX git describe: 23.06-12-g1f3afaa42 Microphysics git describe: 23.06-4-g775efe11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016150934 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.355691791 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350738265 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330570005 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331443954 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.332954414 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.375608375 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316592118 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312185814 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314170543 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313038651 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01041257 seconds Ending run at 16:35:18 UTC on 2023-06-07. Run time = 3.537296505 Run time without initialization = 3.350337185 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.537 ... 3.537 ... 3.537 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3026 2.3549 2.4121 68.19% Gravity::make_radial_gravity() 21 0.3119 0.3255 0.3391 9.59% check_for_negative_density() 10 0.01534 0.07591 0.1279 3.62% Castro::initData() 1 0.03871 0.07721 0.116 3.28% FabArray::ParallelCopy_finish() 41 0.03594 0.0647 0.1109 3.13% Castro::estTimeStep() 21 0.02163 0.06587 0.1061 3.00% FabArray::setVal() 143 0.05534 0.07099 0.08732 2.47% amrex::Copy() 193 0.06305 0.07345 0.08652 2.45% Castro::reset_internal_energy(Fab) 1008 0.04819 0.04978 0.05139 1.45% FabArray::ParallelCopy_nowait() 41 0.03654 0.04222 0.04521 1.28% Castro::normalize_species() 62 0.04104 0.04146 0.04246 1.20% FillPatchIterator::Initialize 41 0.02923 0.03421 0.04154 1.17% StateData::FillBoundary(geom) 41 0.03275 0.0349 0.03723 1.05% Gravity::interpolate_monopole_grav() 21 0.02779 0.0282 0.02873 0.81% Castro::construct_new_gravity_source() 10 0.02176 0.02419 0.02603 0.74% Castro::initialize_do_advance() 10 0.0122 0.01894 0.02479 0.70% Castro::computeTemp() 63 0.01977 0.02066 0.02474 0.70% VisMF::Write(FabArray) 2 0.01397 0.0146 0.01715 0.48% FabArray::Saxpy() 20 0.01224 0.01422 0.01606 0.45% Castro::initialize_advance() 10 0.003836 0.01113 0.01548 0.44% MultiFab::contains_nan() 20 0.01077 0.01203 0.0134 0.38% FabArray::setDomainBndry() 41 0.008511 0.01102 0.01229 0.35% Castro::construct_old_gravity_source() 10 0.007257 0.01018 0.01117 0.32% Amr::writePlotFile() 2 0.006869 0.009563 0.01023 0.29% Castro::initMFs() 1 0.007144 0.007414 0.009152 0.26% Castro::construct_new_source() 50 0.005782 0.006431 0.006771 0.19% StateData::define() 4 0.005909 0.006034 0.006726 0.19% Castro::enforce_min_density() 62 0.00571 0.005981 0.006294 0.18% main() 1 0.005623 0.005884 0.006198 0.18% Castro::swap_state_time_levels() 10 0.003399 0.004576 0.004822 0.14% Gravity::get_new_grav_vector() 11 0.003201 0.003641 0.004091 0.12% Gravity::get_old_grav_vector() 10 0.001738 0.002314 0.00267 0.08% Amr::coarseTimeStep() 10 0.001046 0.001922 0.002645 0.07% Castro::finalize_do_advance() 10 0.000616 0.001787 0.002247 0.06% Castro::buildMetrics() 1 0.001658 0.001698 0.00193 0.05% Castro::expand_state() 10 0.0007557 0.001016 0.001347 0.04% Amr::timeStep() 10 0.0001811 0.0002523 0.0004277 0.01% Amr::InitAmr() 1 0.0002765 0.0002989 0.0004191 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002744 0.0002872 0.0003154 0.01% Castro::do_old_sources() 10 0.000121 0.0001577 0.0001766 0.00% Castro::do_advance_ctu() 10 0.0001126 0.0001361 0.0001735 0.00% Castro::clean_state() 62 0.0001209 0.0001415 0.0001628 0.00% StateDataPhysBCFunct::() 41 8.103e-05 0.0001071 0.0001503 0.00% DistributionMapping::LeastUsedCPUs() 1 7.219e-06 0.0001243 0.0001446 0.00% Castro::finalize_advance() 10 8.065e-05 0.0001054 0.0001265 0.00% Castro::enforce_consistent_e() 1 7.413e-05 8.549e-05 8.904e-05 0.00% Castro::Castro() 1 6.277e-05 7.202e-05 8.568e-05 0.00% FabArray::ParallelCopy() 41 5.837e-05 7.524e-05 8.441e-05 0.00% FillPatchSingleLevel 41 6.082e-05 6.914e-05 7.989e-05 0.00% Castro::construct_old_source() 50 5.152e-05 6.666e-05 7.953e-05 0.00% Castro::do_new_sources() 10 4.765e-05 6.302e-05 7.837e-05 0.00% Amr::FinalizeInit() 1 3.697e-06 1.352e-05 7.3e-05 0.00% FabArrayBase::getCPC() 41 3.993e-05 5.474e-05 6.879e-05 0.00% Amr::writeSmallPlotFile() 1 2.529e-05 4.532e-05 6.76e-05 0.00% Castro::subcycle_advance_ctu() 10 4.06e-05 4.896e-05 6.136e-05 0.00% Amr::defBaseLevel() 1 2.948e-05 4.409e-05 5.594e-05 0.00% Castro::apply_source_to_state() 20 3.019e-05 4.53e-05 5.541e-05 0.00% Castro::construct_old_gravity() 10 2.959e-05 3.834e-05 5.064e-05 0.00% Castro::advance() 10 3.127e-05 3.97e-05 4.528e-05 0.00% Castro::construct_new_gravity() 10 3.334e-05 3.769e-05 4.51e-05 0.00% Castro::enforce_speed_limit() 62 2.325e-05 2.873e-05 3.645e-05 0.00% Castro::check_for_nan() 20 2.059e-05 2.331e-05 2.873e-05 0.00% FabArrayBase::CPC::define() 2 2.177e-05 2.359e-05 2.5e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.253e-05 1.873e-05 2.247e-05 0.00% Castro::post_timestep() 10 1.116e-05 1.592e-05 2.129e-05 0.00% Gravity::swapTimeLevels() 10 1.109e-05 1.363e-05 1.66e-05 0.00% Gravity::set_mass_offset() 10 9.475e-06 1.167e-05 1.412e-05 0.00% Castro::create_source_corrector() 10 7.438e-06 9.218e-06 1.41e-05 0.00% Castro::post_init() 1 2.431e-06 5.396e-06 1.172e-05 0.00% Castro::computeNewDt() 9 7.378e-06 9.289e-06 1.122e-05 0.00% Amr::initSubcycle() 1 8.965e-06 9.662e-06 1.047e-05 0.00% Castro::FluxRegCrseInit 10 6.364e-06 8.818e-06 1.003e-05 0.00% Castro::retry_advance_ctu() 10 6.668e-06 7.711e-06 9.591e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.887e-06 4.761e-06 6.648e-06 0.00% Castro::post_regrid() 1 1.561e-06 3.494e-06 6.573e-06 0.00% Amr::init() 1 1.764e-06 2.711e-06 6.337e-06 0.00% Amr::InitializeInit() 1 2.1e-06 2.609e-06 5.164e-06 0.00% Castro::computeInitialDt() 2 3.275e-06 4.208e-06 5.076e-06 0.00% Castro::FluxRegFineAdd() 10 1.73e-06 2.004e-06 2.408e-06 0.00% Amr::initialInit() 1 1.56e-06 1.904e-06 2.208e-06 0.00% DistributionMapping::Distribute() 1 8.17e-07 9.515e-07 1.123e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.537 3.537 3.537 100.00% Amr::coarseTimeStep() 10 3.334 3.334 3.334 94.25% Amr::timeStep() 10 3.322 3.322 3.323 93.94% Castro::advance() 10 3.305 3.306 3.307 93.48% Castro::subcycle_advance_ctu() 10 3.21 3.23 3.249 91.85% Castro::do_advance_ctu() 10 3.21 3.23 3.249 91.85% Castro::construct_ctu_hydro_source() 10 2.303 2.355 2.412 68.19% Gravity::make_radial_gravity() 21 0.3279 0.3422 0.3533 9.99% Gravity::get_new_grav_vector() 11 0.2199 0.2219 0.2235 6.32% FillPatchIterator::Initialize 41 0.1549 0.1874 0.2199 6.22% Castro::construct_old_gravity() 10 0.1927 0.204 0.2143 6.06% Gravity::get_old_grav_vector() 10 0.1914 0.2031 0.2137 6.04% Castro::initialize_do_advance() 10 0.1665 0.1891 0.1995 5.64% Castro::construct_new_gravity() 10 0.1933 0.1945 0.1956 5.53% Amr::init() 1 0.1864 0.1865 0.1865 5.27% FillPatchSingleLevel 41 0.115 0.1421 0.1821 5.15% Amr::initialInit() 1 0.17 0.1701 0.1703 4.81% Castro::expand_state() 10 0.1066 0.1324 0.1513 4.28% FabArray::ParallelCopy() 41 0.07946 0.1071 0.1476 4.17% Amr::InitializeInit() 1 0.06091 0.09941 0.1392 3.93% Amr::defBaseLevel() 1 0.06091 0.0994 0.1392 3.93% check_for_negative_density() 10 0.01534 0.07591 0.1279 3.62% Castro::clean_state() 62 0.1145 0.1174 0.1228 3.47% Castro::initData() 1 0.04298 0.08128 0.1195 3.38% FabArray::ParallelCopy_finish() 41 0.03594 0.0647 0.1109 3.13% Amr::FinalizeInit() 1 0.03084 0.07072 0.1093 3.09% Castro::estTimeStep() 21 0.02163 0.06587 0.1061 3.00% Castro::do_old_sources() 10 0.09553 0.09706 0.09985 2.82% Castro::initialize_advance() 10 0.05248 0.07291 0.0924 2.61% FabArray::setVal() 143 0.05534 0.07099 0.08732 2.47% amrex::Copy() 193 0.06305 0.07345 0.08652 2.45% Castro::computeInitialDt() 2 0.002131 0.04189 0.08041 2.27% Castro::computeTemp() 63 0.06838 0.07072 0.07642 2.16% Castro::do_new_sources() 10 0.06086 0.06432 0.06947 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04847 0.05006 0.05167 1.46% Castro::reset_internal_energy(Fab) 1008 0.04819 0.04978 0.05139 1.45% FabArray::ParallelCopy_nowait() 41 0.03663 0.0423 0.0453 1.28% Castro::normalize_species() 62 0.04104 0.04146 0.04246 1.20% StateDataPhysBCFunct::() 41 0.03284 0.03501 0.03734 1.06% StateData::FillBoundary(geom) 41 0.03275 0.0349 0.03723 1.05% Castro::construct_new_source() 50 0.02755 0.03062 0.03276 0.93% Gravity::interpolate_monopole_grav() 21 0.02779 0.0282 0.02873 0.81% Castro::post_init() 1 0.02811 0.02836 0.02854 0.81% Amr::writePlotFile() 2 0.02676 0.02687 0.02703 0.76% Castro::construct_new_gravity_source() 10 0.02176 0.02419 0.02603 0.74% Castro::finalize_do_advance() 10 0.01176 0.01734 0.02139 0.60% VisMF::Write(FabArray) 2 0.01397 0.0146 0.01715 0.48% Castro::post_timestep() 10 0.01565 0.01593 0.01625 0.46% Castro::apply_source_to_state() 20 0.01229 0.01426 0.01611 0.46% FabArray::Saxpy() 20 0.01224 0.01422 0.01606 0.45% Castro::check_for_nan() 20 0.01079 0.01205 0.01342 0.38% MultiFab::contains_nan() 20 0.01077 0.01203 0.0134 0.38% Castro::Castro() 1 0.01175 0.0119 0.01276 0.36% FabArray::setDomainBndry() 41 0.008511 0.01102 0.01229 0.35% Castro::construct_old_source() 50 0.007309 0.01024 0.01124 0.32% Castro::construct_old_gravity_source() 10 0.007257 0.01018 0.01117 0.32% Castro::initMFs() 1 0.007144 0.007414 0.009152 0.26% Castro::computeNewDt() 9 0.008428 0.008439 0.008446 0.24% AmrLevel::AmrLevel(dm) 1 0.005928 0.006053 0.006741 0.19% StateData::define() 4 0.005909 0.006034 0.006726 0.19% Castro::enforce_min_density() 62 0.00571 0.005981 0.006294 0.18% Castro::swap_state_time_levels() 10 0.003399 0.004576 0.004822 0.14% Castro::finalize_advance() 10 0.003139 0.003312 0.003556 0.10% Castro::buildMetrics() 1 0.001795 0.001839 0.002102 0.06% Castro::post_regrid() 1 0.001522 0.001643 0.002002 0.06% Amr::InitAmr() 1 0.0002862 0.0003086 0.0004282 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.225e-05 0.00013 0.0001514 0.00% DistributionMapping::LeastUsedCPUs() 1 7.219e-06 0.0001243 0.0001446 0.00% FabArrayBase::getCPC() 41 6.417e-05 7.833e-05 9.378e-05 0.00% Castro::enforce_consistent_e() 1 7.413e-05 8.549e-05 8.904e-05 0.00% Amr::writeSmallPlotFile() 1 2.529e-05 4.532e-05 6.76e-05 0.00% Castro::enforce_speed_limit() 62 2.325e-05 2.873e-05 3.645e-05 0.00% FabArrayBase::CPC::define() 2 2.177e-05 2.359e-05 2.5e-05 0.00% Gravity::swapTimeLevels() 10 1.109e-05 1.363e-05 1.66e-05 0.00% Gravity::set_mass_offset() 10 9.475e-06 1.167e-05 1.412e-05 0.00% Castro::create_source_corrector() 10 7.438e-06 9.218e-06 1.41e-05 0.00% Amr::initSubcycle() 1 8.965e-06 9.662e-06 1.047e-05 0.00% Castro::FluxRegCrseInit 10 6.364e-06 8.818e-06 1.003e-05 0.00% Castro::retry_advance_ctu() 10 6.668e-06 7.711e-06 9.591e-06 0.00% Castro::FluxRegFineAdd() 10 1.73e-06 2.004e-06 2.408e-06 0.00% DistributionMapping::Distribute() 1 8.17e-07 9.515e-07 1.123e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 34 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-12-g1f3afaa42d0d) finalized