MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-12-g1f3afaa42d0d) initialized Starting run at 05:32:10 UTC on 2023-06-07. Successfully read inputs file ... Castro git describe: 23.06-11-g88a03f820 AMReX git describe: 23.06-12-g1f3afaa42 Microphysics git describe: 23.06-4-g775efe11 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016606122 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364036756 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355675005 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332383563 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330188011 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.366546008 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.382346826 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.325818237 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311948825 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313231818 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311936278 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010452073 seconds Ending run at 05:32:14 UTC on 2023-06-07. Run time = 3.60605545 Run time without initialization = 3.412449129 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.604 ... 3.605 ... 3.606 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3182 2.3642 2.3991 66.53% Gravity::make_radial_gravity() 21 0.3366 0.3457 0.3612 10.02% check_for_negative_density() 10 0.0497 0.08404 0.1332 3.69% Castro::estTimeStep() 21 0.03633 0.08045 0.1272 3.53% Castro::initData() 1 0.04615 0.08119 0.1175 3.26% FabArray::setVal() 143 0.06397 0.07604 0.09102 2.52% amrex::Copy() 193 0.06479 0.07375 0.08145 2.26% FabArray::ParallelCopy_finish() 41 0.038 0.05705 0.07043 1.95% Castro::reset_internal_energy(Fab) 1008 0.04881 0.05035 0.05223 1.45% StateData::FillBoundary(geom) 41 0.03392 0.03786 0.04424 1.23% FabArray::ParallelCopy_nowait() 41 0.03599 0.0418 0.04408 1.22% Castro::normalize_species() 62 0.04133 0.04248 0.04369 1.21% FillPatchIterator::Initialize 41 0.02976 0.03448 0.03824 1.06% Castro::construct_new_gravity_source() 10 0.02239 0.02736 0.03225 0.89% Gravity::interpolate_monopole_grav() 21 0.02788 0.02844 0.03034 0.84% Castro::initialize_do_advance() 10 0.01228 0.01834 0.02255 0.63% Castro::computeTemp() 63 0.01983 0.02026 0.02117 0.59% VisMF::Write(FabArray) 2 0.01337 0.01434 0.01745 0.48% Castro::initialize_advance() 10 0.009924 0.01286 0.01582 0.44% FabArray::Saxpy() 20 0.01251 0.01469 0.01574 0.44% MultiFab::contains_nan() 20 0.01126 0.01205 0.0131 0.36% FabArray::setDomainBndry() 41 0.008818 0.01144 0.01285 0.36% Amr::writePlotFile() 2 0.007089 0.01031 0.01155 0.32% Castro::construct_old_gravity_source() 10 0.007575 0.01031 0.01097 0.30% Castro::initMFs() 1 0.007006 0.00829 0.01029 0.29% StateData::define() 4 0.005781 0.006752 0.008492 0.24% main() 1 0.005039 0.006247 0.007099 0.20% Castro::construct_new_source() 50 0.005747 0.00633 0.006881 0.19% Castro::enforce_min_density() 62 0.005774 0.006204 0.006652 0.18% Castro::swap_state_time_levels() 10 0.00346 0.004647 0.005489 0.15% Amr::coarseTimeStep() 10 0.002724 0.003839 0.005336 0.15% Gravity::get_new_grav_vector() 11 0.002981 0.003677 0.004046 0.11% Gravity::get_old_grav_vector() 10 0.001786 0.002298 0.002789 0.08% Castro::buildMetrics() 1 0.001625 0.001925 0.002445 0.07% Castro::finalize_do_advance() 10 0.0006576 0.001539 0.001857 0.05% Castro::expand_state() 10 0.0007263 0.000762 0.0008312 0.02% Amr::InitAmr() 1 0.0002745 0.0003659 0.0006618 0.02% Amr::timeStep() 10 0.0001798 0.0002585 0.0004761 0.01% DistributionMapping::LeastUsedCPUs() 1 7.131e-06 0.0003397 0.0004347 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002802 0.0003051 0.0003615 0.01% Castro::finalize_advance() 10 8.069e-05 0.0001299 0.000322 0.01% Castro::do_advance_ctu() 10 0.0002289 0.0002423 0.000252 0.01% Castro::clean_state() 62 0.0001261 0.0001387 0.0001522 0.00% StateDataPhysBCFunct::() 41 8.581e-05 9.673e-05 0.000107 0.00% Castro::enforce_consistent_e() 1 7.964e-05 8.638e-05 9.736e-05 0.00% Castro::construct_old_source() 50 4.456e-05 6.765e-05 9.066e-05 0.00% Castro::Castro() 1 6.614e-05 7.274e-05 8.883e-05 0.00% FabArray::ParallelCopy() 41 6.429e-05 7.147e-05 8.354e-05 0.00% FillPatchSingleLevel 41 6.519e-05 7.286e-05 8.04e-05 0.00% Amr::FinalizeInit() 1 4.299e-06 1.406e-05 7.873e-05 0.00% FabArrayBase::getCPC() 41 3.995e-05 5.191e-05 7.391e-05 0.00% Castro::do_new_sources() 10 5.616e-05 6.415e-05 7.247e-05 0.00% Castro::subcycle_advance_ctu() 10 3.828e-05 5.231e-05 7.118e-05 0.00% Castro::do_old_sources() 10 4.655e-05 5.766e-05 6.434e-05 0.00% Amr::writeSmallPlotFile() 1 2.878e-05 4.42e-05 6.178e-05 0.00% Castro::apply_source_to_state() 20 3.65e-05 4.58e-05 5.382e-05 0.00% Castro::construct_new_gravity() 10 3.313e-05 3.954e-05 4.959e-05 0.00% Castro::advance() 10 3.4e-05 4.202e-05 4.813e-05 0.00% Amr::defBaseLevel() 1 3.106e-05 4.025e-05 4.698e-05 0.00% Castro::construct_old_gravity() 10 3.144e-05 3.674e-05 4.175e-05 0.00% FabArrayBase::CPC::define() 2 2.236e-05 2.699e-05 3.138e-05 0.00% Castro::enforce_speed_limit() 62 2.306e-05 2.551e-05 2.902e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.274e-05 1.87e-05 2.891e-05 0.00% Castro::check_for_nan() 20 1.842e-05 2.178e-05 2.576e-05 0.00% Gravity::swapTimeLevels() 10 9.821e-06 1.423e-05 1.995e-05 0.00% Castro::post_timestep() 10 1.209e-05 1.484e-05 1.814e-05 0.00% Amr::initSubcycle() 1 9.156e-06 1.145e-05 1.604e-05 0.00% Gravity::set_mass_offset() 10 9.863e-06 1.153e-05 1.493e-05 0.00% Castro::computeNewDt() 9 7.985e-06 1.002e-05 1.455e-05 0.00% Castro::FluxRegCrseInit 10 6.942e-06 8.909e-06 1.222e-05 0.00% Castro::create_source_corrector() 10 7.967e-06 9.249e-06 1.167e-05 0.00% Castro::computeInitialDt() 2 3.691e-06 5.113e-06 1.071e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.274e-06 6.146e-06 1.019e-05 0.00% Amr::init() 1 1.998e-06 3.074e-06 8.957e-06 0.00% Amr::InitializeInit() 1 1.911e-06 2.89e-06 6.677e-06 0.00% Castro::retry_advance_ctu() 10 4.859e-06 5.552e-06 6.507e-06 0.00% Castro::post_regrid() 1 1.914e-06 3.057e-06 4.762e-06 0.00% Castro::post_init() 1 3.015e-06 3.809e-06 4.744e-06 0.00% Castro::FluxRegFineAdd() 10 1.923e-06 2.242e-06 2.692e-06 0.00% Amr::initialInit() 1 1.423e-06 1.672e-06 1.846e-06 0.00% DistributionMapping::Distribute() 1 9.6e-07 1.121e-06 1.501e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.604 3.605 3.606 100.00% Amr::coarseTimeStep() 10 3.395 3.395 3.395 94.15% Amr::timeStep() 10 3.378 3.379 3.381 93.74% Castro::advance() 10 3.362 3.363 3.364 93.28% Castro::subcycle_advance_ctu() 10 3.268 3.278 3.287 91.16% Castro::do_advance_ctu() 10 3.268 3.278 3.287 91.16% Castro::construct_ctu_hydro_source() 10 2.318 2.364 2.399 66.53% Gravity::make_radial_gravity() 21 0.3532 0.363 0.3757 10.42% Gravity::get_new_grav_vector() 11 0.2375 0.2394 0.2418 6.71% Castro::construct_old_gravity() 10 0.2041 0.2114 0.2218 6.15% Gravity::get_old_grav_vector() 10 0.2029 0.2105 0.2212 6.13% Castro::construct_new_gravity() 10 0.2098 0.2113 0.2132 5.91% FillPatchIterator::Initialize 41 0.1633 0.183 0.2013 5.58% Amr::init() 1 0.1927 0.193 0.1931 5.36% Castro::initialize_do_advance() 10 0.1557 0.1742 0.19 5.27% Amr::initialInit() 1 0.1758 0.1762 0.1766 4.90% FillPatchSingleLevel 41 0.119 0.137 0.1524 4.23% Amr::InitializeInit() 1 0.06906 0.1042 0.1444 4.01% Amr::defBaseLevel() 1 0.06905 0.1042 0.1444 4.01% Castro::expand_state() 10 0.1064 0.125 0.1407 3.90% check_for_negative_density() 10 0.0497 0.08404 0.1332 3.69% Castro::estTimeStep() 21 0.03633 0.08045 0.1272 3.53% Castro::clean_state() 62 0.1156 0.1188 0.1224 3.39% Castro::initData() 1 0.05021 0.08501 0.1211 3.36% FabArray::ParallelCopy() 41 0.08103 0.09901 0.108 3.00% Amr::FinalizeInit() 1 0.03141 0.07209 0.1075 2.98% FabArray::setVal() 143 0.06397 0.07604 0.09102 2.52% Castro::initialize_advance() 10 0.07153 0.08098 0.09071 2.52% Castro::do_new_sources() 10 0.05906 0.07021 0.08294 2.30% amrex::Copy() 193 0.06479 0.07375 0.08145 2.26% Castro::computeInitialDt() 2 0.00215 0.04261 0.07779 2.16% Castro::computeTemp() 63 0.06899 0.07092 0.07376 2.05% FabArray::ParallelCopy_finish() 41 0.038 0.05705 0.07043 1.95% Castro::reset_internal_energy(MultiFab) 63 0.0491 0.05066 0.05259 1.46% Castro::reset_internal_energy(Fab) 1008 0.04881 0.05035 0.05223 1.45% Castro::do_old_sources() 10 0.04008 0.04526 0.04672 1.30% StateDataPhysBCFunct::() 41 0.03402 0.03796 0.04435 1.23% StateData::FillBoundary(geom) 41 0.03392 0.03786 0.04424 1.23% FabArray::ParallelCopy_nowait() 41 0.03606 0.04188 0.04417 1.22% Castro::normalize_species() 62 0.04133 0.04248 0.04369 1.21% Castro::construct_new_source() 50 0.02845 0.03369 0.03891 1.08% Castro::construct_new_gravity_source() 10 0.02239 0.02736 0.03225 0.89% Gravity::interpolate_monopole_grav() 21 0.02788 0.02844 0.03034 0.84% Castro::post_init() 1 0.02885 0.02903 0.02924 0.81% Amr::writePlotFile() 2 0.02709 0.02736 0.02758 0.76% VisMF::Write(FabArray) 2 0.01337 0.01434 0.01745 0.48% Castro::post_timestep() 10 0.01564 0.01639 0.01717 0.48% Castro::apply_source_to_state() 20 0.01255 0.01474 0.0158 0.44% FabArray::Saxpy() 20 0.01251 0.01469 0.01574 0.44% Castro::Castro() 1 0.01029 0.01199 0.01461 0.41% Castro::check_for_nan() 20 0.01128 0.01207 0.01312 0.36% MultiFab::contains_nan() 20 0.01126 0.01205 0.0131 0.36% FabArray::setDomainBndry() 41 0.008818 0.01144 0.01285 0.36% Castro::construct_old_source() 50 0.00762 0.01038 0.01105 0.31% Castro::construct_old_gravity_source() 10 0.007575 0.01031 0.01097 0.30% Castro::computeNewDt() 9 0.01056 0.01057 0.01058 0.29% Castro::initMFs() 1 0.007006 0.00829 0.01029 0.29% AmrLevel::AmrLevel(dm) 1 0.005794 0.00677 0.008515 0.24% StateData::define() 4 0.005781 0.006752 0.008492 0.24% Castro::enforce_min_density() 62 0.005774 0.006204 0.006652 0.18% Castro::swap_state_time_levels() 10 0.00346 0.004647 0.005489 0.15% Castro::finalize_advance() 10 0.003034 0.003957 0.004808 0.13% Castro::buildMetrics() 1 0.001757 0.002097 0.00268 0.07% Castro::post_regrid() 1 0.001518 0.001619 0.00194 0.05% Castro::finalize_do_advance() 10 0.0006576 0.001539 0.001857 0.05% Amr::InitAmr() 1 0.0002836 0.0003773 0.0006778 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.277e-05 0.000347 0.0004428 0.01% DistributionMapping::LeastUsedCPUs() 1 7.131e-06 0.0003397 0.0004347 0.01% FabArrayBase::getCPC() 41 6.57e-05 7.89e-05 0.0001053 0.00% Castro::enforce_consistent_e() 1 7.964e-05 8.638e-05 9.736e-05 0.00% Amr::writeSmallPlotFile() 1 2.878e-05 4.42e-05 6.178e-05 0.00% FabArrayBase::CPC::define() 2 2.236e-05 2.699e-05 3.138e-05 0.00% Castro::enforce_speed_limit() 62 2.306e-05 2.551e-05 2.902e-05 0.00% Gravity::swapTimeLevels() 10 9.821e-06 1.423e-05 1.995e-05 0.00% Amr::initSubcycle() 1 9.156e-06 1.145e-05 1.604e-05 0.00% Gravity::set_mass_offset() 10 9.863e-06 1.153e-05 1.493e-05 0.00% Castro::FluxRegCrseInit 10 6.942e-06 8.909e-06 1.222e-05 0.00% Castro::create_source_corrector() 10 7.967e-06 9.249e-06 1.167e-05 0.00% Castro::retry_advance_ctu() 10 4.859e-06 5.552e-06 6.507e-06 0.00% Castro::FluxRegFineAdd() 10 1.923e-06 2.242e-06 2.692e-06 0.00% DistributionMapping::Distribute() 1 9.6e-07 1.121e-06 1.501e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-12-g1f3afaa42d0d) finalized