MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-14-g7c7a8fb1fff5) initialized Starting run at 13:36:18 UTC on 2023-06-08. Successfully read inputs file ... Castro git describe: 23.06-16-ga79df5d53 AMReX git describe: 23.06-14-g7c7a8fb1f Microphysics git describe: 23.06-7-g4ad49d9a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016521896 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370435074 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354343403 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338893808 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336651123 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362979528 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.350855591 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313926024 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316039863 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314817231 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314319062 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010315 seconds Ending run at 13:36:22 UTC on 2023-06-08. Run time = 3.572610714 Run time without initialization = 3.391308791 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.571 ... 3.572 ... 3.573 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3442 2.3731 2.4162 67.63% Gravity::make_radial_gravity() 21 0.3247 0.3344 0.3412 9.55% Castro::estTimeStep() 21 0.02168 0.06817 0.1206 3.37% Castro::initData() 1 0.03823 0.07761 0.1118 3.13% FabArray::setVal() 143 0.06548 0.07921 0.09317 2.61% amrex::Copy() 193 0.07346 0.07964 0.08853 2.48% check_for_negative_density() 10 0.008478 0.05314 0.08263 2.31% FabArray::ParallelCopy_finish() 41 0.03649 0.05615 0.06703 1.88% Castro::reset_internal_energy(Fab) 1008 0.04835 0.05001 0.05142 1.44% FabArray::ParallelCopy_nowait() 41 0.04112 0.04364 0.04564 1.28% Castro::normalize_species() 62 0.04128 0.04295 0.04455 1.25% StateData::FillBoundary(geom) 41 0.0344 0.03788 0.04146 1.16% FillPatchIterator::Initialize 41 0.03041 0.03652 0.04049 1.13% Castro::construct_new_gravity_source() 10 0.02341 0.02781 0.03211 0.90% Gravity::interpolate_monopole_grav() 21 0.02855 0.02944 0.03164 0.89% Castro::initialize_do_advance() 10 0.01865 0.0207 0.02364 0.66% Castro::computeTemp() 63 0.01964 0.02031 0.0208 0.58% FabArray::Saxpy() 20 0.01523 0.01595 0.01701 0.48% VisMF::Write(FabArray) 2 0.0133 0.01402 0.01696 0.47% Castro::initialize_advance() 10 0.00953 0.01248 0.01562 0.44% FabArray::setDomainBndry() 41 0.009673 0.01247 0.0137 0.38% MultiFab::contains_nan() 20 0.01029 0.01092 0.01183 0.33% Castro::construct_old_gravity_source() 10 0.01082 0.01118 0.01151 0.32% Amr::writePlotFile() 2 0.007179 0.009973 0.01076 0.30% Castro::initMFs() 1 0.006958 0.007243 0.009112 0.26% main() 1 0.005471 0.006468 0.007038 0.20% Castro::construct_new_source() 50 0.00623 0.006426 0.006628 0.19% Castro::enforce_min_density() 62 0.006161 0.006356 0.006616 0.19% StateData::define() 4 0.005841 0.00596 0.006603 0.18% Castro::swap_state_time_levels() 10 0.00352 0.004863 0.005616 0.16% Gravity::get_new_grav_vector() 11 0.003451 0.004218 0.004589 0.13% Amr::coarseTimeStep() 10 0.001225 0.002852 0.004037 0.11% Gravity::get_old_grav_vector() 10 0.001946 0.002646 0.003101 0.09% Castro::finalize_do_advance() 10 0.001755 0.002086 0.00235 0.07% Castro::buildMetrics() 1 0.001629 0.001674 0.001893 0.05% Castro::expand_state() 10 0.0009202 0.0009969 0.001114 0.03% Amr::timeStep() 10 0.0001992 0.000247 0.0004077 0.01% Amr::InitAmr() 1 0.0002617 0.0002891 0.0004074 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002746 0.0002926 0.0003008 0.01% Castro::clean_state() 62 0.0001506 0.0001645 0.0001846 0.01% Castro::do_old_sources() 10 0.0001287 0.0001605 0.0001815 0.01% Castro::do_advance_ctu() 10 9.22e-05 0.0001174 0.0001665 0.00% DistributionMapping::LeastUsedCPUs() 1 7.316e-06 0.0001248 0.0001526 0.00% StateDataPhysBCFunct::() 41 8.023e-05 9.838e-05 0.0001253 0.00% Castro::finalize_advance() 10 8.78e-05 0.0001061 0.0001233 0.00% Castro::enforce_consistent_e() 1 7.407e-05 8.786e-05 0.000101 0.00% Amr::FinalizeInit() 1 4.219e-06 1.646e-05 9.842e-05 0.00% Castro::Castro() 1 6.377e-05 7.489e-05 9.522e-05 0.00% FabArray::ParallelCopy() 41 7.034e-05 7.844e-05 9.102e-05 0.00% FillPatchSingleLevel 41 6.885e-05 7.666e-05 8.931e-05 0.00% FabArrayBase::getCPC() 41 5.428e-05 6.455e-05 8.247e-05 0.00% Castro::construct_old_source() 50 5.249e-05 7.253e-05 8.222e-05 0.00% Castro::do_new_sources() 10 5.444e-05 6.566e-05 7.239e-05 0.00% Amr::writeSmallPlotFile() 1 2.663e-05 4.993e-05 6.558e-05 0.00% Castro::advance() 10 3.339e-05 4.546e-05 5.943e-05 0.00% Castro::apply_source_to_state() 20 3.222e-05 4.467e-05 5.847e-05 0.00% Castro::subcycle_advance_ctu() 10 4.396e-05 4.983e-05 5.337e-05 0.00% Amr::defBaseLevel() 1 3.461e-05 4.449e-05 5.295e-05 0.00% Castro::construct_new_gravity() 10 3.69e-05 4.266e-05 4.754e-05 0.00% Castro::construct_old_gravity() 10 3.956e-05 4.187e-05 4.502e-05 0.00% Castro::enforce_speed_limit() 62 2.442e-05 2.805e-05 3.167e-05 0.00% FabArrayBase::CPC::define() 2 2.02e-05 2.488e-05 2.783e-05 0.00% Castro::check_for_nan() 20 2.231e-05 2.438e-05 2.735e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.347e-05 1.789e-05 2.385e-05 0.00% Castro::post_timestep() 10 1.252e-05 1.546e-05 1.778e-05 0.00% Castro::FluxRegCrseInit 10 7.688e-06 1.019e-05 1.686e-05 0.00% Gravity::swapTimeLevels() 10 1.133e-05 1.462e-05 1.626e-05 0.00% Castro::computeNewDt() 9 8.054e-06 1.067e-05 1.577e-05 0.00% Gravity::set_mass_offset() 10 7.867e-06 1.007e-05 1.197e-05 0.00% Castro::create_source_corrector() 10 7.903e-06 9.26e-06 1.044e-05 0.00% Amr::initSubcycle() 1 8.886e-06 9.239e-06 1.038e-05 0.00% Castro::post_init() 1 3.113e-06 5.575e-06 9.765e-06 0.00% Castro::retry_advance_ctu() 10 6.873e-06 7.954e-06 9.591e-06 0.00% Amr::initialInit() 1 1.621e-06 2.764e-06 8.775e-06 0.00% Castro::post_regrid() 1 2.102e-06 3.451e-06 5.124e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.701e-06 4.348e-06 5.112e-06 0.00% Amr::InitializeInit() 1 2.018e-06 2.451e-06 4.898e-06 0.00% Castro::computeInitialDt() 2 3.804e-06 4.13e-06 4.575e-06 0.00% Castro::FluxRegFineAdd() 10 1.98e-06 2.357e-06 2.698e-06 0.00% Amr::init() 1 1.755e-06 2.263e-06 2.601e-06 0.00% DistributionMapping::Distribute() 1 9.41e-07 9.975e-07 1.074e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.571 3.572 3.573 100.00% Amr::coarseTimeStep() 10 3.374 3.374 3.374 94.44% Amr::timeStep() 10 3.36 3.361 3.363 94.13% Castro::advance() 10 3.344 3.345 3.346 93.66% Castro::subcycle_advance_ctu() 10 3.251 3.261 3.27 91.53% Castro::do_advance_ctu() 10 3.25 3.261 3.27 91.52% Castro::construct_ctu_hydro_source() 10 2.362 2.39 2.434 68.12% Gravity::make_radial_gravity() 21 0.3435 0.3539 0.361 10.10% Gravity::get_new_grav_vector() 11 0.2373 0.2379 0.2387 6.68% Castro::construct_old_gravity() 10 0.1997 0.208 0.2152 6.02% Gravity::get_old_grav_vector() 10 0.1983 0.207 0.214 5.99% Castro::construct_new_gravity() 10 0.21 0.2109 0.2119 5.93% FillPatchIterator::Initialize 41 0.1705 0.187 0.2035 5.70% Castro::initialize_do_advance() 10 0.1738 0.1874 0.1989 5.57% Amr::init() 1 0.1807 0.1809 0.1809 5.06% Amr::initialInit() 1 0.1641 0.1644 0.1647 4.61% FillPatchSingleLevel 41 0.1167 0.138 0.1521 4.26% Castro::expand_state() 10 0.1128 0.1278 0.1408 3.94% Amr::InitializeInit() 1 0.05984 0.09956 0.1336 3.74% Amr::defBaseLevel() 1 0.05984 0.09956 0.1336 3.74% Castro::clean_state() 62 0.1157 0.1191 0.1224 3.43% Castro::estTimeStep() 21 0.02168 0.06817 0.1206 3.37% Castro::initData() 1 0.04224 0.08172 0.116 3.25% FabArray::ParallelCopy() 41 0.08049 0.09996 0.112 3.14% Amr::FinalizeInit() 1 0.0309 0.06479 0.1047 2.93% Castro::do_old_sources() 10 0.09545 0.09784 0.1024 2.86% FabArray::setVal() 143 0.06548 0.07921 0.09317 2.61% Castro::initialize_advance() 10 0.07144 0.0805 0.09053 2.53% amrex::Copy() 193 0.07346 0.07964 0.08853 2.48% Castro::do_new_sources() 10 0.06096 0.07273 0.08442 2.36% check_for_negative_density() 10 0.008478 0.05314 0.08263 2.31% Castro::computeInitialDt() 2 0.002151 0.03616 0.0759 2.12% Castro::computeTemp() 63 0.06864 0.07061 0.07241 2.03% FabArray::ParallelCopy_finish() 41 0.03649 0.05615 0.06703 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04862 0.0503 0.05172 1.45% Castro::reset_internal_energy(Fab) 1008 0.04835 0.05001 0.05142 1.44% FabArray::ParallelCopy_nowait() 41 0.04122 0.04373 0.04572 1.28% Castro::normalize_species() 62 0.04128 0.04295 0.04455 1.25% StateDataPhysBCFunct::() 41 0.03448 0.03798 0.04155 1.16% Castro::finalize_do_advance() 10 0.01589 0.02875 0.0415 1.16% StateData::FillBoundary(geom) 41 0.0344 0.03788 0.04146 1.16% Castro::construct_new_source() 50 0.02971 0.03423 0.03865 1.08% Castro::construct_new_gravity_source() 10 0.02341 0.02781 0.03211 0.90% Gravity::interpolate_monopole_grav() 21 0.02855 0.02944 0.03164 0.89% Castro::post_init() 1 0.0279 0.02818 0.02845 0.80% Amr::writePlotFile() 2 0.02658 0.02691 0.02714 0.76% Castro::apply_source_to_state() 20 0.01528 0.016 0.01707 0.48% FabArray::Saxpy() 20 0.01523 0.01595 0.01701 0.48% VisMF::Write(FabArray) 2 0.0133 0.01402 0.01696 0.47% Castro::post_timestep() 10 0.01567 0.01609 0.01673 0.47% FabArray::setDomainBndry() 41 0.009673 0.01247 0.0137 0.38% Castro::Castro() 1 0.01151 0.01168 0.01262 0.35% Castro::check_for_nan() 20 0.01031 0.01094 0.01185 0.33% MultiFab::contains_nan() 20 0.01029 0.01092 0.01183 0.33% Castro::construct_old_source() 50 0.01089 0.01125 0.01159 0.32% Castro::construct_old_gravity_source() 10 0.01082 0.01118 0.01151 0.32% Castro::initMFs() 1 0.006958 0.007243 0.009112 0.26% Castro::computeNewDt() 9 0.008618 0.008634 0.008645 0.24% AmrLevel::AmrLevel(dm) 1 0.005864 0.005977 0.006618 0.19% Castro::enforce_min_density() 62 0.006161 0.006356 0.006616 0.19% StateData::define() 4 0.005841 0.00596 0.006603 0.18% Castro::swap_state_time_levels() 10 0.00352 0.004863 0.005616 0.16% Castro::finalize_advance() 10 0.002784 0.003674 0.004683 0.13% Castro::buildMetrics() 1 0.001755 0.001807 0.002058 0.06% Castro::post_regrid() 1 0.001522 0.001635 0.001873 0.05% Amr::InitAmr() 1 0.0002708 0.0002984 0.0004166 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.202e-05 0.0001301 0.0001586 0.00% DistributionMapping::LeastUsedCPUs() 1 7.316e-06 0.0001248 0.0001526 0.00% FabArrayBase::getCPC() 41 7.649e-05 8.943e-05 0.0001103 0.00% Castro::enforce_consistent_e() 1 7.407e-05 8.786e-05 0.000101 0.00% Amr::writeSmallPlotFile() 1 2.663e-05 4.993e-05 6.558e-05 0.00% Castro::enforce_speed_limit() 62 2.442e-05 2.805e-05 3.167e-05 0.00% FabArrayBase::CPC::define() 2 2.02e-05 2.488e-05 2.783e-05 0.00% Castro::FluxRegCrseInit 10 7.688e-06 1.019e-05 1.686e-05 0.00% Gravity::swapTimeLevels() 10 1.133e-05 1.462e-05 1.626e-05 0.00% Gravity::set_mass_offset() 10 7.867e-06 1.007e-05 1.197e-05 0.00% Castro::create_source_corrector() 10 7.903e-06 9.26e-06 1.044e-05 0.00% Amr::initSubcycle() 1 8.886e-06 9.239e-06 1.038e-05 0.00% Castro::retry_advance_ctu() 10 6.873e-06 7.954e-06 9.591e-06 0.00% Castro::FluxRegFineAdd() 10 1.98e-06 2.357e-06 2.698e-06 0.00% DistributionMapping::Distribute() 1 9.41e-07 9.975e-07 1.074e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-14-g7c7a8fb1fff5) finalized