MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-14-g7c7a8fb1fff5) initialized Starting run at 14:59:36 UTC on 2023-06-08. Successfully read inputs file ... Castro git describe: 23.06-15-g340e8cfd6 AMReX git describe: 23.06-14-g7c7a8fb1f Microphysics git describe: 23.06-7-g4ad49d9a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016446897 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367332787 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347074064 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334761815 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333448098 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360208783 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347525686 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314210535 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314482941 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316250708 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314474745 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010392553 seconds Ending run at 14:59:39 UTC on 2023-06-08. Run time = 3.573596044 Run time without initialization = 3.36807513 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.572 ... 3.573 ... 3.574 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2613 2.3472 2.4148 67.57% Gravity::make_radial_gravity() 21 0.3127 0.333 0.3467 9.70% check_for_negative_density() 10 0.0223 0.09402 0.1838 5.14% Castro::estTimeStep() 21 0.03958 0.08515 0.1329 3.72% Castro::initData() 1 0.03874 0.08262 0.1304 3.65% FabArray::setVal() 143 0.06235 0.07282 0.08897 2.49% amrex::Copy() 193 0.06132 0.07206 0.08195 2.29% FabArray::ParallelCopy_finish() 41 0.03596 0.05334 0.08145 2.28% Castro::reset_internal_energy(Fab) 1008 0.04746 0.05042 0.05407 1.51% Castro::normalize_species() 62 0.04082 0.04216 0.04418 1.24% FabArray::ParallelCopy_nowait() 41 0.03752 0.0413 0.04305 1.20% StateData::FillBoundary(geom) 41 0.03406 0.03698 0.0401 1.12% FillPatchIterator::Initialize 41 0.02981 0.03339 0.03562 1.00% Castro::construct_new_gravity_source() 10 0.02214 0.02579 0.03035 0.85% Gravity::interpolate_monopole_grav() 21 0.02814 0.02842 0.02883 0.81% Castro::initialize_do_advance() 10 0.01283 0.01802 0.02225 0.62% Castro::computeTemp() 63 0.01737 0.01978 0.02202 0.62% VisMF::Write(FabArray) 2 0.01369 0.01429 0.01762 0.49% FabArray::Saxpy() 20 0.01266 0.01408 0.01483 0.41% Castro::initialize_advance() 10 0.004138 0.0104 0.01442 0.40% MultiFab::contains_nan() 20 0.009977 0.01106 0.01277 0.36% FabArray::setDomainBndry() 41 0.008641 0.01121 0.01254 0.35% Castro::construct_old_gravity_source() 10 0.007542 0.01025 0.01098 0.31% Amr::writePlotFile() 2 0.007477 0.01013 0.01086 0.30% Castro::initMFs() 1 0.00696 0.00815 0.01041 0.29% Castro::enforce_min_density() 62 0.005777 0.006349 0.008553 0.24% StateData::define() 4 0.005759 0.006677 0.008519 0.24% main() 1 0.005717 0.006506 0.007201 0.20% Castro::construct_new_source() 50 0.00571 0.006268 0.006678 0.19% Gravity::get_new_grav_vector() 11 0.003168 0.004169 0.005919 0.17% Castro::swap_state_time_levels() 10 0.002735 0.004505 0.00478 0.13% Amr::coarseTimeStep() 10 0.001516 0.002644 0.003794 0.11% Gravity::get_old_grav_vector() 10 0.001782 0.002349 0.002693 0.08% Castro::buildMetrics() 1 0.001631 0.001909 0.002453 0.07% Castro::finalize_do_advance() 10 0.0008372 0.001678 0.001981 0.06% Castro::expand_state() 10 0.0008575 0.001105 0.001263 0.04% Amr::InitAmr() 1 0.000289 0.0003724 0.0005183 0.01% Amr::timeStep() 10 0.0001912 0.0002618 0.0004473 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000287 0.0003165 0.0003956 0.01% DistributionMapping::LeastUsedCPUs() 1 7.813e-06 0.0001876 0.0002814 0.01% Castro::do_advance_ctu() 10 0.0001157 0.0001334 0.0001806 0.01% Castro::clean_state() 62 0.0001353 0.0001463 0.0001715 0.00% Castro::do_old_sources() 10 0.0001274 0.0001451 0.0001632 0.00% Castro::finalize_advance() 10 8.136e-05 9.761e-05 0.0001197 0.00% StateDataPhysBCFunct::() 41 7.467e-05 9.314e-05 0.000118 0.00% Amr::FinalizeInit() 1 3.995e-06 1.804e-05 0.0001065 0.00% Castro::enforce_consistent_e() 1 7.819e-05 8.631e-05 0.0001035 0.00% Castro::Castro() 1 6.119e-05 7.293e-05 9.417e-05 0.00% FillPatchSingleLevel 41 5.951e-05 7.033e-05 8.5e-05 0.00% FabArray::ParallelCopy() 41 6.222e-05 7.144e-05 8.088e-05 0.00% FabArrayBase::getCPC() 41 4.672e-05 5.972e-05 7.82e-05 0.00% Castro::construct_old_source() 50 5.394e-05 6.659e-05 7.614e-05 0.00% Castro::do_new_sources() 10 4.967e-05 6.286e-05 7.085e-05 0.00% Castro::subcycle_advance_ctu() 10 4.056e-05 5.068e-05 6.46e-05 0.00% Amr::writeSmallPlotFile() 1 2.762e-05 4.253e-05 6.333e-05 0.00% Castro::advance() 10 3.436e-05 4.096e-05 5.51e-05 0.00% Amr::defBaseLevel() 1 2.953e-05 4.028e-05 5.322e-05 0.00% Castro::construct_new_gravity() 10 3.305e-05 4.144e-05 4.975e-05 0.00% Castro::apply_source_to_state() 20 3.699e-05 4.466e-05 4.912e-05 0.00% Castro::construct_old_gravity() 10 3.259e-05 3.809e-05 4.026e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.535e-05 2.194e-05 3.465e-05 0.00% Castro::enforce_speed_limit() 62 2.407e-05 2.736e-05 3.34e-05 0.00% FabArrayBase::CPC::define() 2 2.081e-05 2.386e-05 2.84e-05 0.00% Castro::check_for_nan() 20 1.937e-05 2.226e-05 2.408e-05 0.00% Amr::initSubcycle() 1 9.106e-06 1.316e-05 2.255e-05 0.00% Castro::post_timestep() 10 1.334e-05 1.556e-05 1.865e-05 0.00% Gravity::swapTimeLevels() 10 1.336e-05 1.466e-05 1.665e-05 0.00% Gravity::set_mass_offset() 10 1.024e-05 1.281e-05 1.484e-05 0.00% Castro::computeNewDt() 9 7.838e-06 9.007e-06 1.133e-05 0.00% Castro::post_regrid() 1 1.664e-06 3.407e-06 1.024e-05 0.00% Castro::FluxRegCrseInit 10 8.311e-06 8.883e-06 1.021e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.112e-06 5.505e-06 9.928e-06 0.00% Castro::create_source_corrector() 10 7.355e-06 8.542e-06 9.818e-06 0.00% Castro::retry_advance_ctu() 10 6.861e-06 7.953e-06 9.384e-06 0.00% Amr::InitializeInit() 1 2.066e-06 2.9e-06 4.898e-06 0.00% Castro::computeInitialDt() 2 3.335e-06 4.142e-06 4.784e-06 0.00% Castro::post_init() 1 2.736e-06 3.599e-06 4.72e-06 0.00% Amr::initialInit() 1 1.472e-06 1.946e-06 2.834e-06 0.00% Amr::init() 1 1.875e-06 2.139e-06 2.538e-06 0.00% Castro::FluxRegFineAdd() 10 1.886e-06 2.063e-06 2.294e-06 0.00% DistributionMapping::Distribute() 1 9.24e-07 1.272e-06 2.104e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.572 3.573 3.574 100.00% Amr::coarseTimeStep() 10 3.351 3.351 3.351 93.76% Amr::timeStep() 10 3.337 3.338 3.339 93.45% Castro::advance() 10 3.321 3.322 3.323 93.00% Castro::subcycle_advance_ctu() 10 3.232 3.244 3.253 91.04% Castro::do_advance_ctu() 10 3.232 3.244 3.253 91.04% Castro::construct_ctu_hydro_source() 10 2.261 2.347 2.415 67.57% Gravity::make_radial_gravity() 21 0.3278 0.3496 0.3607 10.09% Gravity::get_new_grav_vector() 11 0.2258 0.232 0.2365 6.62% Castro::construct_old_gravity() 10 0.188 0.2012 0.2111 5.91% Gravity::get_old_grav_vector() 10 0.1873 0.2005 0.2104 5.89% Castro::construct_new_gravity() 10 0.1995 0.2052 0.2086 5.84% Amr::init() 1 0.2048 0.205 0.2051 5.74% FillPatchIterator::Initialize 41 0.1541 0.1765 0.1918 5.37% Castro::initialize_do_advance() 10 0.1636 0.1783 0.1889 5.29% Amr::initialInit() 1 0.1882 0.1884 0.1885 5.28% check_for_negative_density() 10 0.0223 0.09402 0.1838 5.14% Amr::InitializeInit() 1 0.05934 0.1052 0.1574 4.41% Amr::defBaseLevel() 1 0.05934 0.1052 0.1574 4.41% FillPatchSingleLevel 41 0.1143 0.1319 0.1534 4.29% Castro::expand_state() 10 0.1056 0.1231 0.1344 3.76% Castro::initData() 1 0.04259 0.08636 0.1341 3.75% Castro::estTimeStep() 21 0.03958 0.08515 0.1329 3.72% Amr::FinalizeInit() 1 0.03088 0.08312 0.1289 3.61% Castro::clean_state() 62 0.1111 0.1182 0.1256 3.51% FabArray::ParallelCopy() 41 0.07827 0.0948 0.1192 3.33% Castro::computeInitialDt() 2 0.002142 0.05453 0.1005 2.81% Castro::do_old_sources() 10 0.08921 0.09269 0.0959 2.68% FabArray::setVal() 143 0.06235 0.07282 0.08897 2.49% Castro::initialize_advance() 10 0.0641 0.07443 0.08628 2.41% amrex::Copy() 193 0.06132 0.07206 0.08195 2.29% FabArray::ParallelCopy_finish() 41 0.03596 0.05334 0.08145 2.28% Castro::do_new_sources() 10 0.05898 0.06747 0.07886 2.21% Castro::computeTemp() 63 0.06513 0.07051 0.07644 2.14% Castro::reset_internal_energy(MultiFab) 63 0.04775 0.05074 0.05442 1.52% Castro::reset_internal_energy(Fab) 1008 0.04746 0.05042 0.05407 1.51% Castro::normalize_species() 62 0.04082 0.04216 0.04418 1.24% FabArray::ParallelCopy_nowait() 41 0.03762 0.04138 0.04312 1.21% StateDataPhysBCFunct::() 41 0.03415 0.03708 0.0402 1.12% StateData::FillBoundary(geom) 41 0.03406 0.03698 0.0401 1.12% Castro::construct_new_source() 50 0.02825 0.03206 0.03694 1.03% Castro::finalize_do_advance() 10 0.01206 0.02389 0.03246 0.91% Castro::construct_new_gravity_source() 10 0.02214 0.02579 0.03035 0.85% Gravity::interpolate_monopole_grav() 21 0.02814 0.02842 0.02883 0.81% Castro::post_init() 1 0.02676 0.02801 0.02834 0.79% Amr::writePlotFile() 2 0.02693 0.02708 0.02727 0.76% VisMF::Write(FabArray) 2 0.01369 0.01429 0.01762 0.49% Castro::post_timestep() 10 0.01519 0.01575 0.01605 0.45% Castro::apply_source_to_state() 20 0.01271 0.01412 0.01488 0.42% FabArray::Saxpy() 20 0.01266 0.01408 0.01483 0.41% Castro::Castro() 1 0.01065 0.01194 0.01471 0.41% Castro::check_for_nan() 20 0.009999 0.01109 0.0128 0.36% MultiFab::contains_nan() 20 0.009977 0.01106 0.01277 0.36% FabArray::setDomainBndry() 41 0.008641 0.01121 0.01254 0.35% Castro::construct_old_source() 50 0.007599 0.01032 0.01104 0.31% Castro::construct_old_gravity_source() 10 0.007542 0.01025 0.01098 0.31% Castro::initMFs() 1 0.00696 0.00815 0.01041 0.29% AmrLevel::AmrLevel(dm) 1 0.005782 0.006699 0.008553 0.24% Castro::enforce_min_density() 62 0.005777 0.006349 0.008553 0.24% StateData::define() 4 0.005759 0.006677 0.008519 0.24% Castro::computeNewDt() 9 0.008411 0.008419 0.00843 0.24% Castro::finalize_advance() 10 0.002947 0.003851 0.004843 0.14% Castro::swap_state_time_levels() 10 0.002735 0.004505 0.00478 0.13% Castro::post_regrid() 1 0.001552 0.001742 0.002868 0.08% Castro::buildMetrics() 1 0.001745 0.002055 0.00267 0.07% Amr::InitAmr() 1 0.0002986 0.0003856 0.0005344 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.34e-05 0.0001944 0.0002897 0.01% DistributionMapping::LeastUsedCPUs() 1 7.813e-06 0.0001876 0.0002814 0.01% Castro::enforce_consistent_e() 1 7.819e-05 8.631e-05 0.0001035 0.00% FabArrayBase::getCPC() 41 7.173e-05 8.358e-05 0.0001025 0.00% Amr::writeSmallPlotFile() 1 2.762e-05 4.253e-05 6.333e-05 0.00% Castro::enforce_speed_limit() 62 2.407e-05 2.736e-05 3.34e-05 0.00% FabArrayBase::CPC::define() 2 2.081e-05 2.386e-05 2.84e-05 0.00% Amr::initSubcycle() 1 9.106e-06 1.316e-05 2.255e-05 0.00% Gravity::swapTimeLevels() 10 1.336e-05 1.466e-05 1.665e-05 0.00% Gravity::set_mass_offset() 10 1.024e-05 1.281e-05 1.484e-05 0.00% Castro::FluxRegCrseInit 10 8.311e-06 8.883e-06 1.021e-05 0.00% Castro::create_source_corrector() 10 7.355e-06 8.542e-06 9.818e-06 0.00% Castro::retry_advance_ctu() 10 6.861e-06 7.953e-06 9.384e-06 0.00% Castro::FluxRegFineAdd() 10 1.886e-06 2.063e-06 2.294e-06 0.00% DistributionMapping::Distribute() 1 9.24e-07 1.272e-06 2.104e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-14-g7c7a8fb1fff5) finalized