MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-14-g7c7a8fb1fff5) initialized Starting run at 05:27:11 UTC on 2023-06-08. Successfully read inputs file ... Castro git describe: 23.06-14-g0c09f1d99 AMReX git describe: 23.06-14-g7c7a8fb1f Microphysics git describe: 23.06-7-g4ad49d9a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017735254 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359171628 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341495841 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338689292 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332615038 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.335598575 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.38048946 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313954642 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31138861 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310168706 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311097112 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01052567 seconds Ending run at 05:27:15 UTC on 2023-06-08. Run time = 3.53784572 Run time without initialization = 3.352828316 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.536 ... 3.537 ... 3.538 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2861 2.3489 2.3788 67.24% Gravity::make_radial_gravity() 21 0.3165 0.3298 0.3477 9.83% check_for_negative_density() 10 0.02085 0.05171 0.1185 3.35% Castro::initData() 1 0.03881 0.07865 0.114 3.22% Castro::estTimeStep() 21 0.02361 0.06622 0.109 3.08% FabArray::ParallelCopy_finish() 41 0.03489 0.06985 0.1035 2.93% FabArray::setVal() 143 0.06341 0.07692 0.09485 2.68% amrex::Copy() 193 0.06353 0.07479 0.08515 2.41% Castro::reset_internal_energy(Fab) 1008 0.04831 0.0511 0.05644 1.60% FabArray::ParallelCopy_nowait() 41 0.03718 0.04212 0.04418 1.25% Castro::normalize_species() 62 0.0407 0.04155 0.04331 1.22% FillPatchIterator::Initialize 41 0.02978 0.03715 0.04298 1.21% StateData::FillBoundary(geom) 41 0.0327 0.03547 0.03925 1.11% Gravity::interpolate_monopole_grav() 21 0.02775 0.02803 0.02834 0.80% Castro::construct_new_gravity_source() 10 0.02187 0.02404 0.02582 0.73% Castro::initialize_do_advance() 10 0.01274 0.01971 0.02482 0.70% Castro::computeTemp() 63 0.01915 0.02046 0.02333 0.66% VisMF::Write(FabArray) 2 0.01398 0.01474 0.01786 0.50% Castro::initialize_advance() 10 0.0103 0.01313 0.01623 0.46% FabArray::Saxpy() 20 0.01219 0.01415 0.01523 0.43% FabArray::setDomainBndry() 41 0.008381 0.01181 0.01307 0.37% MultiFab::contains_nan() 20 0.01094 0.01201 0.01297 0.37% Amr::writePlotFile() 2 0.00815 0.01091 0.01173 0.33% Castro::construct_old_gravity_source() 10 0.007229 0.01038 0.01128 0.32% Castro::initMFs() 1 0.006988 0.007257 0.009087 0.26% Castro::construct_new_source() 50 0.005657 0.006407 0.007137 0.20% main() 1 0.005296 0.00616 0.006803 0.19% StateData::define() 4 0.005812 0.005954 0.006656 0.19% Castro::enforce_min_density() 62 0.005786 0.006067 0.00643 0.18% Castro::swap_state_time_levels() 10 0.002992 0.004673 0.005499 0.16% Amr::coarseTimeStep() 10 0.001125 0.004042 0.005025 0.14% Gravity::get_new_grav_vector() 11 0.002851 0.003724 0.004001 0.11% Gravity::get_old_grav_vector() 10 0.001713 0.002399 0.002809 0.08% Castro::buildMetrics() 1 0.001667 0.001711 0.001896 0.05% Castro::finalize_do_advance() 10 0.0006726 0.001468 0.001703 0.05% Castro::expand_state() 10 0.0007497 0.001071 0.001242 0.04% Amr::timeStep() 10 0.0001734 0.0002567 0.0004644 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002734 0.0003042 0.0004072 0.01% Amr::InitAmr() 1 0.000264 0.0002926 0.0004049 0.01% Castro::do_old_sources() 10 0.0001363 0.000164 0.0001797 0.01% Castro::do_advance_ctu() 10 0.0001227 0.0001413 0.0001705 0.00% Castro::clean_state() 62 0.0001358 0.0001472 0.000157 0.00% DistributionMapping::LeastUsedCPUs() 1 7.087e-06 0.0001129 0.0001392 0.00% Amr::defBaseLevel() 1 3.411e-05 5.205e-05 0.0001298 0.00% StateDataPhysBCFunct::() 41 8.657e-05 0.0001005 0.000126 0.00% Castro::finalize_advance() 10 7.37e-05 0.0001028 0.0001236 0.00% Castro::Castro() 1 6.336e-05 7.928e-05 0.0001211 0.00% Castro::enforce_consistent_e() 1 7.827e-05 8.892e-05 0.0001131 0.00% FabArray::ParallelCopy() 41 6.169e-05 7.804e-05 0.0001046 0.00% Amr::FinalizeInit() 1 4.353e-06 1.631e-05 9.537e-05 0.00% FillPatchSingleLevel 41 6.953e-05 7.636e-05 9.216e-05 0.00% Castro::construct_old_source() 50 5.67e-05 7.057e-05 8.401e-05 0.00% Castro::do_new_sources() 10 5.643e-05 6.809e-05 7.474e-05 0.00% Amr::writeSmallPlotFile() 1 2.91e-05 5.47e-05 6.755e-05 0.00% Castro::advance() 10 3.518e-05 4.697e-05 6.565e-05 0.00% Castro::subcycle_advance_ctu() 10 4.12e-05 4.863e-05 6.363e-05 0.00% FabArrayBase::getCPC() 41 4.817e-05 5.457e-05 6.296e-05 0.00% Castro::construct_new_gravity() 10 3.212e-05 4.114e-05 5.622e-05 0.00% Castro::apply_source_to_state() 20 3.732e-05 4.681e-05 5.466e-05 0.00% Castro::computeNewDt() 9 7.577e-06 1.677e-05 5.423e-05 0.00% Castro::construct_old_gravity() 10 3.466e-05 3.89e-05 4.599e-05 0.00% Castro::enforce_speed_limit() 62 2.333e-05 2.961e-05 3.756e-05 0.00% FabArrayBase::CPC::define() 2 2.025e-05 2.422e-05 3.128e-05 0.00% Gravity::set_mass_offset() 10 1.036e-05 1.442e-05 3.103e-05 0.00% Castro::post_timestep() 10 1.18e-05 1.673e-05 3.096e-05 0.00% Castro::check_for_nan() 20 1.881e-05 2.127e-05 2.418e-05 0.00% Gravity::swapTimeLevels() 10 1.148e-05 1.568e-05 2.416e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.302e-05 1.702e-05 2.345e-05 0.00% Amr::initialInit() 1 1.393e-06 4.67e-06 1.919e-05 0.00% Amr::initSubcycle() 1 9.01e-06 1.051e-05 1.86e-05 0.00% Castro::create_source_corrector() 10 7.512e-06 9.287e-06 1.085e-05 0.00% Castro::FluxRegCrseInit 10 6.236e-06 8.438e-06 9.761e-06 0.00% Castro::retry_advance_ctu() 10 7.398e-06 7.896e-06 8.646e-06 0.00% Castro::computeInitialDt() 2 3.606e-06 4.38e-06 5.772e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.688e-06 4.539e-06 5.74e-06 0.00% Amr::InitializeInit() 1 1.904e-06 2.444e-06 4.694e-06 0.00% Castro::post_regrid() 1 1.623e-06 3.044e-06 4.249e-06 0.00% Castro::post_init() 1 2.697e-06 3.518e-06 4.201e-06 0.00% Amr::init() 1 2.009e-06 2.189e-06 2.44e-06 0.00% Castro::FluxRegFineAdd() 10 1.761e-06 1.909e-06 2.037e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.026e-06 1.846e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.536 3.537 3.538 100.00% Amr::coarseTimeStep() 10 3.336 3.336 3.336 94.28% Amr::timeStep() 10 3.319 3.319 3.322 93.90% Castro::advance() 10 3.302 3.303 3.303 93.37% Castro::subcycle_advance_ctu() 10 3.2 3.217 3.227 91.21% Castro::do_advance_ctu() 10 3.2 3.217 3.227 91.21% Castro::construct_ctu_hydro_source() 10 2.286 2.349 2.379 67.24% Gravity::make_radial_gravity() 21 0.3339 0.347 0.3625 10.25% Gravity::get_new_grav_vector() 11 0.2217 0.223 0.2244 6.34% Castro::construct_old_gravity() 10 0.1993 0.2097 0.2223 6.28% Gravity::get_old_grav_vector() 10 0.1981 0.2089 0.2217 6.27% FillPatchIterator::Initialize 41 0.1717 0.1967 0.2155 6.09% Castro::initialize_do_advance() 10 0.1776 0.1954 0.2106 5.95% Castro::construct_new_gravity() 10 0.1952 0.1958 0.1965 5.55% Amr::init() 1 0.1844 0.1846 0.1846 5.22% FillPatchSingleLevel 41 0.1185 0.1478 0.1738 4.91% Amr::initialInit() 1 0.1665 0.1668 0.167 4.72% Castro::expand_state() 10 0.117 0.1379 0.1547 4.37% FabArray::ParallelCopy() 41 0.0791 0.1121 0.1409 3.98% Amr::InitializeInit() 1 0.06061 0.1006 0.136 3.84% Amr::defBaseLevel() 1 0.06061 0.1006 0.136 3.84% Castro::clean_state() 62 0.1143 0.1187 0.1248 3.53% check_for_negative_density() 10 0.02085 0.05171 0.1185 3.35% Castro::initData() 1 0.04293 0.08273 0.1183 3.34% Castro::estTimeStep() 21 0.02361 0.06622 0.109 3.08% Amr::FinalizeInit() 1 0.03068 0.06615 0.1064 3.01% FabArray::ParallelCopy_finish() 41 0.03489 0.06985 0.1035 2.93% Castro::do_old_sources() 10 0.09621 0.09985 0.1027 2.90% Castro::initialize_advance() 10 0.07264 0.08206 0.09939 2.81% FabArray::setVal() 143 0.06341 0.07692 0.09485 2.68% amrex::Copy() 193 0.06353 0.07479 0.08515 2.41% Castro::computeTemp() 63 0.06777 0.07187 0.07774 2.20% Castro::computeInitialDt() 2 0.002195 0.03759 0.07756 2.19% Castro::do_new_sources() 10 0.06019 0.06412 0.07097 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04862 0.05141 0.05673 1.60% Castro::reset_internal_energy(Fab) 1008 0.04831 0.0511 0.05644 1.60% FabArray::ParallelCopy_nowait() 41 0.03727 0.04219 0.04426 1.25% Castro::normalize_species() 62 0.0407 0.04155 0.04331 1.22% StateDataPhysBCFunct::() 41 0.03279 0.03557 0.03935 1.11% StateData::FillBoundary(geom) 41 0.0327 0.03547 0.03925 1.11% Castro::construct_new_source() 50 0.02752 0.03045 0.03253 0.92% Amr::writePlotFile() 2 0.02814 0.0284 0.02868 0.81% Castro::post_init() 1 0.02784 0.02814 0.02837 0.80% Gravity::interpolate_monopole_grav() 21 0.02775 0.02803 0.02834 0.80% Castro::construct_new_gravity_source() 10 0.02187 0.02404 0.02582 0.73% Castro::finalize_do_advance() 10 0.01211 0.01915 0.02349 0.66% Castro::post_timestep() 10 0.01544 0.01615 0.01871 0.53% VisMF::Write(FabArray) 2 0.01398 0.01474 0.01786 0.50% Castro::apply_source_to_state() 20 0.01224 0.01419 0.01528 0.43% FabArray::Saxpy() 20 0.01219 0.01415 0.01523 0.43% FabArray::setDomainBndry() 41 0.008381 0.01181 0.01307 0.37% Castro::check_for_nan() 20 0.01096 0.01204 0.013 0.37% MultiFab::contains_nan() 20 0.01094 0.01201 0.01297 0.37% Castro::Castro() 1 0.01155 0.01172 0.01258 0.36% Castro::construct_old_source() 50 0.00729 0.01045 0.01135 0.32% Castro::construct_old_gravity_source() 10 0.007229 0.01038 0.01128 0.32% Castro::computeNewDt() 9 0.01073 0.01097 0.01108 0.31% Castro::initMFs() 1 0.006988 0.007257 0.009087 0.26% AmrLevel::AmrLevel(dm) 1 0.005827 0.005971 0.006673 0.19% StateData::define() 4 0.005812 0.005954 0.006656 0.19% Castro::enforce_min_density() 62 0.005786 0.006067 0.00643 0.18% Castro::swap_state_time_levels() 10 0.002992 0.004673 0.005499 0.16% Castro::finalize_advance() 10 0.003163 0.003397 0.003629 0.10% Castro::buildMetrics() 1 0.0018 0.001849 0.00207 0.06% Castro::post_regrid() 1 0.001522 0.00164 0.00185 0.05% Amr::InitAmr() 1 0.0002738 0.0003032 0.0004141 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.175e-05 0.0001185 0.0001459 0.00% DistributionMapping::LeastUsedCPUs() 1 7.087e-06 0.0001129 0.0001392 0.00% Castro::enforce_consistent_e() 1 7.827e-05 8.892e-05 0.0001131 0.00% FabArrayBase::getCPC() 41 7.011e-05 7.879e-05 9.044e-05 0.00% Amr::writeSmallPlotFile() 1 2.91e-05 5.47e-05 6.755e-05 0.00% Castro::enforce_speed_limit() 62 2.333e-05 2.961e-05 3.756e-05 0.00% FabArrayBase::CPC::define() 2 2.025e-05 2.422e-05 3.128e-05 0.00% Gravity::set_mass_offset() 10 1.036e-05 1.442e-05 3.103e-05 0.00% Gravity::swapTimeLevels() 10 1.148e-05 1.568e-05 2.416e-05 0.00% Amr::initSubcycle() 1 9.01e-06 1.051e-05 1.86e-05 0.00% Castro::create_source_corrector() 10 7.512e-06 9.287e-06 1.085e-05 0.00% Castro::FluxRegCrseInit 10 6.236e-06 8.438e-06 9.761e-06 0.00% Castro::retry_advance_ctu() 10 7.398e-06 7.896e-06 8.646e-06 0.00% Castro::FluxRegFineAdd() 10 1.761e-06 1.909e-06 2.037e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.026e-06 1.846e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-14-g7c7a8fb1fff5) finalized