MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-14-g7c7a8fb1fff5) initialized Starting run at 11:34:57 UTC on 2023-06-09. Successfully read inputs file ... Castro git describe: 23.06-17-g41c1de265 AMReX git describe: 23.06-14-g7c7a8fb1f Microphysics git describe: 23.06-8-gc1297423 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017312966 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.385189191 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.372832383 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.347491401 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.344558244 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.475627485 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342853875 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313709223 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312552001 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31123879 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313202701 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010552867 seconds Ending run at 11:35:01 UTC on 2023-06-09. Run time = 3.723993407 Run time without initialization = 3.53740543 Average number of zones advanced per microsecond: 0.741 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.722 ... 3.723 ... 3.724 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3628 2.4017 2.5128 67.47% Gravity::make_radial_gravity() 21 0.3354 0.345 0.3501 9.40% check_for_negative_density() 10 0.0669 0.182 0.221 5.94% Castro::initData() 1 0.03828 0.08044 0.1143 3.07% Castro::estTimeStep() 21 0.02293 0.06577 0.1141 3.06% amrex::Copy() 193 0.07487 0.08009 0.08541 2.29% FabArray::setVal() 143 0.06585 0.07254 0.08325 2.24% FabArray::ParallelCopy_finish() 41 0.03749 0.04867 0.06201 1.67% Castro::reset_internal_energy(Fab) 1008 0.04815 0.05032 0.05211 1.40% FabArray::ParallelCopy_nowait() 41 0.04082 0.04364 0.04512 1.21% Castro::normalize_species() 62 0.04109 0.04243 0.04337 1.16% StateData::FillBoundary(geom) 41 0.03416 0.03698 0.04125 1.11% FillPatchIterator::Initialize 41 0.03047 0.03693 0.03881 1.04% Gravity::interpolate_monopole_grav() 21 0.02797 0.02834 0.02882 0.77% Castro::construct_new_gravity_source() 10 0.02298 0.02535 0.02802 0.75% Castro::initialize_do_advance() 10 0.01862 0.02018 0.02244 0.60% Castro::computeTemp() 63 0.01979 0.02046 0.02111 0.57% VisMF::Write(FabArray) 2 0.01386 0.01456 0.01758 0.47% Castro::initialize_advance() 10 0.009826 0.01236 0.01631 0.44% FabArray::Saxpy() 20 0.01419 0.01466 0.015 0.40% FabArray::setDomainBndry() 41 0.01002 0.01294 0.0138 0.37% MultiFab::contains_nan() 20 0.01116 0.01176 0.01274 0.34% Castro::construct_old_gravity_source() 10 0.009922 0.01084 0.01153 0.31% Amr::writePlotFile() 2 0.007642 0.01031 0.01125 0.30% Castro::initMFs() 1 0.007053 0.007769 0.008166 0.22% main() 1 0.004691 0.005857 0.006838 0.18% Castro::enforce_min_density() 62 0.005939 0.006295 0.006732 0.18% StateData::define() 4 0.005896 0.006385 0.006668 0.18% Castro::construct_new_source() 50 0.006245 0.006437 0.006598 0.18% Gravity::get_new_grav_vector() 11 0.003475 0.004722 0.006413 0.17% Castro::swap_state_time_levels() 10 0.003541 0.004863 0.005507 0.15% Amr::coarseTimeStep() 10 0.001348 0.002641 0.003548 0.10% Gravity::get_old_grav_vector() 10 0.00184 0.002801 0.003009 0.08% Castro::finalize_do_advance() 10 0.001341 0.001741 0.001949 0.05% Castro::buildMetrics() 1 0.001636 0.001825 0.001946 0.05% Castro::expand_state() 10 0.0006779 0.0007581 0.0008341 0.02% Amr::timeStep() 10 0.000174 0.0002497 0.0004494 0.01% Amr::InitAmr() 1 0.0002839 0.0003281 0.0004362 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000301 0.0003125 0.0003322 0.01% Castro::clean_state() 62 0.0001358 0.0001667 0.0002092 0.01% Castro::do_old_sources() 10 0.0001364 0.0001575 0.0001669 0.00% DistributionMapping::LeastUsedCPUs() 1 7.205e-06 0.0001084 0.0001499 0.00% Castro::finalize_advance() 10 9.723e-05 0.0001098 0.0001272 0.00% StateDataPhysBCFunct::() 41 8.832e-05 0.0001058 0.0001248 0.00% Castro::Castro() 1 5.892e-05 7.728e-05 0.0001071 0.00% Castro::do_advance_ctu() 10 8.794e-05 9.922e-05 0.0001055 0.00% Castro::enforce_consistent_e() 1 7.529e-05 8.752e-05 9.957e-05 0.00% Amr::FinalizeInit() 1 3.595e-06 1.599e-05 9.621e-05 0.00% Castro::construct_old_source() 50 5.821e-05 7.202e-05 7.953e-05 0.00% FabArray::ParallelCopy() 41 6.887e-05 7.164e-05 7.695e-05 0.00% FillPatchSingleLevel 41 6.81e-05 7.233e-05 7.587e-05 0.00% Castro::do_new_sources() 10 5.504e-05 6.411e-05 7.434e-05 0.00% FabArrayBase::getCPC() 41 5.06e-05 6.174e-05 7.368e-05 0.00% Amr::writeSmallPlotFile() 1 3.412e-05 5.485e-05 6.648e-05 0.00% Castro::subcycle_advance_ctu() 10 3.533e-05 4.882e-05 6.081e-05 0.00% Amr::defBaseLevel() 1 3.286e-05 4.209e-05 5.417e-05 0.00% Castro::apply_source_to_state() 20 4.23e-05 4.631e-05 4.944e-05 0.00% Castro::advance() 10 3.491e-05 4.04e-05 4.691e-05 0.00% Castro::construct_new_gravity() 10 3.694e-05 4.038e-05 4.647e-05 0.00% Castro::construct_old_gravity() 10 3.68e-05 4.213e-05 4.566e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 3.177e-05 4.475e-05 0.00% FabArrayBase::CPC::define() 2 2.044e-05 2.467e-05 2.993e-05 0.00% Gravity::swapTimeLevels() 10 1.15e-05 1.515e-05 2.908e-05 0.00% Castro::check_for_nan() 20 2.216e-05 2.335e-05 2.415e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.284e-05 1.845e-05 2.389e-05 0.00% Castro::computeNewDt() 9 8.593e-06 1.348e-05 1.998e-05 0.00% Castro::post_timestep() 10 1.344e-05 1.559e-05 1.887e-05 0.00% Amr::initSubcycle() 1 9.117e-06 1.119e-05 1.857e-05 0.00% Gravity::set_mass_offset() 10 7.75e-06 9.795e-06 1.21e-05 0.00% Castro::FluxRegCrseInit 10 8.034e-06 9.134e-06 1.059e-05 0.00% Castro::create_source_corrector() 10 8.18e-06 9.201e-06 1.019e-05 0.00% Castro::computeInitialDt() 2 3.209e-06 4.57e-06 9.79e-06 0.00% Castro::retry_advance_ctu() 10 6.984e-06 8.223e-06 9.464e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.71e-06 4.784e-06 6.572e-06 0.00% Castro::post_init() 1 3.166e-06 3.987e-06 4.935e-06 0.00% Amr::InitializeInit() 1 1.908e-06 2.488e-06 4.771e-06 0.00% Castro::post_regrid() 1 1.782e-06 2.913e-06 4.209e-06 0.00% Amr::init() 1 1.787e-06 2.32e-06 3.201e-06 0.00% Castro::FluxRegFineAdd() 10 1.742e-06 2.055e-06 2.402e-06 0.00% Amr::initialInit() 1 1.437e-06 1.594e-06 1.827e-06 0.00% DistributionMapping::Distribute() 1 9.27e-07 1.067e-06 1.317e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.722 3.723 3.724 100.00% Amr::coarseTimeStep() 10 3.52 3.52 3.52 94.52% Amr::timeStep() 10 3.507 3.507 3.509 94.22% Castro::advance() 10 3.49 3.491 3.492 93.76% Castro::subcycle_advance_ctu() 10 3.404 3.413 3.417 91.76% Castro::do_advance_ctu() 10 3.403 3.413 3.417 91.76% Castro::construct_ctu_hydro_source() 10 2.382 2.42 2.532 67.99% Gravity::make_radial_gravity() 21 0.3525 0.3643 0.3716 9.98% Gravity::get_new_grav_vector() 11 0.2329 0.2341 0.2353 6.32% Castro::construct_old_gravity() 10 0.2062 0.2173 0.2236 6.00% Gravity::get_old_grav_vector() 10 0.2053 0.2165 0.2228 5.98% check_for_negative_density() 10 0.0669 0.182 0.221 5.94% Castro::construct_new_gravity() 10 0.206 0.2065 0.207 5.56% Castro::initialize_do_advance() 10 0.1755 0.1828 0.1912 5.13% FillPatchIterator::Initialize 41 0.168 0.1795 0.1882 5.05% Amr::init() 1 0.186 0.1861 0.1861 5.00% Amr::initialInit() 1 0.1685 0.169 0.1696 4.55% FillPatchSingleLevel 41 0.1179 0.1296 0.1408 3.78% Amr::InitializeInit() 1 0.06049 0.1027 0.1374 3.69% Amr::defBaseLevel() 1 0.06049 0.1027 0.1374 3.69% Castro::expand_state() 10 0.1139 0.1237 0.1324 3.56% Castro::clean_state() 62 0.115 0.119 0.1218 3.27% Castro::initData() 1 0.04194 0.0844 0.1181 3.17% Castro::estTimeStep() 21 0.02293 0.06577 0.1141 3.06% Amr::FinalizeInit() 1 0.03136 0.06633 0.108 2.90% FabArray::ParallelCopy() 41 0.08099 0.09247 0.103 2.77% Castro::do_old_sources() 10 0.09729 0.0989 0.1012 2.72% amrex::Copy() 193 0.07487 0.08009 0.08541 2.29% Castro::initialize_advance() 10 0.07041 0.07488 0.08443 2.27% FabArray::setVal() 143 0.06585 0.07254 0.08325 2.24% Castro::computeInitialDt() 2 0.002178 0.03691 0.07901 2.12% Castro::do_new_sources() 10 0.06101 0.06792 0.07618 2.05% Castro::computeTemp() 63 0.06825 0.07109 0.07299 1.96% FabArray::ParallelCopy_finish() 41 0.03749 0.04867 0.06201 1.67% Castro::reset_internal_energy(MultiFab) 63 0.04846 0.05063 0.05243 1.41% Castro::reset_internal_energy(Fab) 1008 0.04815 0.05032 0.05211 1.40% FabArray::ParallelCopy_nowait() 41 0.04092 0.04373 0.04522 1.21% Castro::normalize_species() 62 0.04109 0.04243 0.04337 1.16% StateDataPhysBCFunct::() 41 0.03429 0.03708 0.04137 1.11% StateData::FillBoundary(geom) 41 0.03416 0.03698 0.04125 1.11% Castro::construct_new_source() 50 0.02957 0.03178 0.03455 0.93% Castro::finalize_do_advance() 10 0.01792 0.02583 0.03274 0.88% Castro::post_init() 1 0.02848 0.02896 0.02946 0.79% Gravity::interpolate_monopole_grav() 21 0.02797 0.02834 0.02882 0.77% Amr::writePlotFile() 2 0.02706 0.0277 0.02813 0.76% Castro::construct_new_gravity_source() 10 0.02298 0.02535 0.02802 0.75% VisMF::Write(FabArray) 2 0.01386 0.01456 0.01758 0.47% Castro::post_timestep() 10 0.01567 0.01608 0.01666 0.45% Castro::apply_source_to_state() 20 0.01423 0.01471 0.01505 0.40% FabArray::Saxpy() 20 0.01419 0.01466 0.015 0.40% FabArray::setDomainBndry() 41 0.01002 0.01294 0.0138 0.37% Castro::check_for_nan() 20 0.01118 0.01178 0.01276 0.34% MultiFab::contains_nan() 20 0.01116 0.01176 0.01274 0.34% Castro::Castro() 1 0.01046 0.01173 0.01247 0.33% Castro::construct_old_source() 50 0.00998 0.01091 0.01161 0.31% Castro::construct_old_gravity_source() 10 0.009922 0.01084 0.01153 0.31% Castro::computeNewDt() 9 0.008801 0.008807 0.008815 0.24% Castro::initMFs() 1 0.007053 0.007769 0.008166 0.22% Castro::enforce_min_density() 62 0.005939 0.006295 0.006732 0.18% AmrLevel::AmrLevel(dm) 1 0.005912 0.006403 0.006691 0.18% StateData::define() 4 0.005896 0.006385 0.006668 0.18% Castro::swap_state_time_levels() 10 0.003541 0.004863 0.005507 0.15% Castro::finalize_advance() 10 0.002815 0.003313 0.003806 0.10% Castro::buildMetrics() 1 0.001756 0.001964 0.002093 0.06% Castro::post_regrid() 1 0.001522 0.001663 0.001948 0.05% Amr::InitAmr() 1 0.0002936 0.0003393 0.0004453 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.19e-05 0.0001142 0.0001578 0.00% DistributionMapping::LeastUsedCPUs() 1 7.205e-06 0.0001084 0.0001499 0.00% Castro::enforce_consistent_e() 1 7.529e-05 8.752e-05 9.957e-05 0.00% FabArrayBase::getCPC() 41 7.3e-05 8.641e-05 9.903e-05 0.00% Amr::writeSmallPlotFile() 1 3.412e-05 5.485e-05 6.648e-05 0.00% Castro::enforce_speed_limit() 62 2.653e-05 3.177e-05 4.475e-05 0.00% FabArrayBase::CPC::define() 2 2.044e-05 2.467e-05 2.993e-05 0.00% Gravity::swapTimeLevels() 10 1.15e-05 1.515e-05 2.908e-05 0.00% Amr::initSubcycle() 1 9.117e-06 1.119e-05 1.857e-05 0.00% Gravity::set_mass_offset() 10 7.75e-06 9.795e-06 1.21e-05 0.00% Castro::FluxRegCrseInit 10 8.034e-06 9.134e-06 1.059e-05 0.00% Castro::create_source_corrector() 10 8.18e-06 9.201e-06 1.019e-05 0.00% Castro::retry_advance_ctu() 10 6.984e-06 8.223e-06 9.464e-06 0.00% Castro::FluxRegFineAdd() 10 1.742e-06 2.055e-06 2.402e-06 0.00% DistributionMapping::Distribute() 1 9.27e-07 1.067e-06 1.317e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-14-g7c7a8fb1fff5) finalized