MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-14-g7c7a8fb1fff5) initialized Starting run at 05:30:25 UTC on 2023-06-09. Successfully read inputs file ... Castro git describe: 23.06-16-g0603698ef AMReX git describe: 23.06-14-g7c7a8fb1f Microphysics git describe: 23.06-8-gc1297423 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016485371 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.372842993 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.345351184 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338708449 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33652066 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.370567965 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.338251794 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311970607 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312409298 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310557269 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311463214 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010130593 seconds Ending run at 05:30:29 UTC on 2023-06-09. Run time = 3.569988009 Run time without initialization = 3.366563324 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.568 ... 3.569 ... 3.57 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3376 2.3654 2.3925 67.02% Gravity::make_radial_gravity() 21 0.3344 0.3451 0.3543 9.93% Castro::estTimeStep() 21 0.02466 0.08185 0.1292 3.62% Castro::initData() 1 0.04015 0.08233 0.1287 3.60% FabArray::setVal() 143 0.06187 0.07339 0.08365 2.34% amrex::Copy() 193 0.0697 0.07557 0.0831 2.33% check_for_negative_density() 10 0.02468 0.05152 0.07663 2.15% FabArray::ParallelCopy_finish() 41 0.0352 0.04879 0.05863 1.64% Castro::reset_internal_energy(Fab) 1008 0.04852 0.05033 0.05256 1.47% FabArray::ParallelCopy_nowait() 41 0.04108 0.04299 0.04452 1.25% Castro::normalize_species() 62 0.04132 0.04246 0.04428 1.24% StateData::FillBoundary(geom) 41 0.03377 0.03841 0.04172 1.17% FillPatchIterator::Initialize 41 0.03027 0.03563 0.03794 1.06% Gravity::interpolate_monopole_grav() 21 0.02838 0.02881 0.02963 0.83% Castro::construct_new_gravity_source() 10 0.02309 0.02584 0.02903 0.81% Castro::initialize_do_advance() 10 0.01454 0.019 0.0229 0.64% Castro::computeTemp() 63 0.01964 0.02038 0.02128 0.60% VisMF::Write(FabArray) 2 0.01336 0.01394 0.01694 0.47% Castro::initialize_advance() 10 0.00959 0.01259 0.01571 0.44% FabArray::Saxpy() 20 0.01377 0.01471 0.01541 0.43% FabArray::setDomainBndry() 41 0.008726 0.01211 0.01369 0.38% Castro::construct_old_gravity_source() 10 0.008885 0.01086 0.01152 0.32% MultiFab::contains_nan() 20 0.009996 0.01089 0.01151 0.32% Amr::writePlotFile() 2 0.006934 0.009917 0.01065 0.30% Castro::initMFs() 1 0.006815 0.008299 0.0102 0.29% StateData::define() 4 0.005674 0.007099 0.008323 0.23% main() 1 0.005296 0.006217 0.007028 0.20% Castro::enforce_min_density() 62 0.005853 0.006341 0.006725 0.19% Gravity::get_new_grav_vector() 11 0.003139 0.004579 0.006653 0.19% Castro::construct_new_source() 50 0.00626 0.006376 0.006537 0.18% Castro::swap_state_time_levels() 10 0.00359 0.004903 0.005532 0.15% Amr::coarseTimeStep() 10 0.001438 0.002608 0.003746 0.10% Gravity::get_old_grav_vector() 10 0.00179 0.002448 0.002775 0.08% Castro::buildMetrics() 1 0.00161 0.002029 0.002379 0.07% Castro::finalize_do_advance() 10 0.001464 0.001815 0.002134 0.06% Castro::expand_state() 10 0.0007037 0.0009522 0.001256 0.04% Amr::InitAmr() 1 0.0002945 0.0004087 0.0004974 0.01% Amr::timeStep() 10 0.0001946 0.0002513 0.000425 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002844 0.0003015 0.0003272 0.01% DistributionMapping::LeastUsedCPUs() 1 6.733e-06 0.0001299 0.0002734 0.01% Castro::clean_state() 62 0.0001378 0.0001727 0.0002037 0.01% Castro::do_old_sources() 10 0.00013 0.0001542 0.0001717 0.00% StateDataPhysBCFunct::() 41 8.617e-05 0.0001005 0.000128 0.00% Castro::finalize_advance() 10 8.917e-05 0.0001072 0.0001239 0.00% Castro::do_advance_ctu() 10 7.96e-05 9.757e-05 0.0001218 0.00% Castro::enforce_consistent_e() 1 7.728e-05 9.05e-05 0.0001043 0.00% Castro::construct_old_source() 50 5.695e-05 7.369e-05 8.948e-05 0.00% Castro::Castro() 1 5.684e-05 6.793e-05 8.88e-05 0.00% FabArray::ParallelCopy() 41 6.351e-05 7.458e-05 8.692e-05 0.00% FillPatchSingleLevel 41 6.096e-05 7.283e-05 8.225e-05 0.00% FabArrayBase::getCPC() 41 4.013e-05 6.502e-05 8.145e-05 0.00% Amr::FinalizeInit() 1 4.218e-06 1.402e-05 7.46e-05 0.00% Castro::do_new_sources() 10 5.156e-05 6.262e-05 7.124e-05 0.00% Amr::writeSmallPlotFile() 1 2.562e-05 5.76e-05 6.954e-05 0.00% Castro::subcycle_advance_ctu() 10 4.354e-05 4.974e-05 5.958e-05 0.00% Castro::apply_source_to_state() 20 3.201e-05 4.494e-05 5.753e-05 0.00% Amr::defBaseLevel() 1 3.115e-05 4.523e-05 5.727e-05 0.00% Castro::construct_new_gravity() 10 3.547e-05 4.556e-05 5.48e-05 0.00% Castro::advance() 10 3.505e-05 4.154e-05 4.83e-05 0.00% Castro::construct_old_gravity() 10 3.198e-05 3.902e-05 4.436e-05 0.00% Castro::enforce_speed_limit() 62 2.174e-05 2.863e-05 3.398e-05 0.00% FabArrayBase::CPC::define() 2 2.214e-05 2.598e-05 3.16e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.425e-05 1.976e-05 2.812e-05 0.00% Castro::check_for_nan() 20 2.107e-05 2.286e-05 2.445e-05 0.00% Amr::initSubcycle() 1 9.184e-06 1.312e-05 1.919e-05 0.00% Gravity::swapTimeLevels() 10 1.323e-05 1.51e-05 1.822e-05 0.00% Castro::post_timestep() 10 1.274e-05 1.462e-05 1.66e-05 0.00% Castro::computeInitialDt() 2 3.529e-06 5.856e-06 1.471e-05 0.00% Castro::computeNewDt() 9 7.757e-06 1.009e-05 1.217e-05 0.00% Gravity::set_mass_offset() 10 8.458e-06 1.001e-05 1.156e-05 0.00% Castro::FluxRegCrseInit 10 7.088e-06 8.916e-06 1.105e-05 0.00% Castro::create_source_corrector() 10 7.924e-06 8.736e-06 9.575e-06 0.00% Castro::retry_advance_ctu() 10 6.64e-06 7.672e-06 8.234e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.052e-06 5.026e-06 7.195e-06 0.00% Amr::InitializeInit() 1 2.126e-06 2.803e-06 5.259e-06 0.00% Castro::post_regrid() 1 1.715e-06 3.615e-06 4.925e-06 0.00% Castro::post_init() 1 3.554e-06 4.137e-06 4.838e-06 0.00% Castro::FluxRegFineAdd() 10 1.978e-06 2.244e-06 2.827e-06 0.00% Amr::init() 1 2.05e-06 2.427e-06 2.719e-06 0.00% Amr::initialInit() 1 1.678e-06 1.943e-06 2.226e-06 0.00% DistributionMapping::Distribute() 1 9.16e-07 1.217e-06 1.833e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.568 3.569 3.57 100.00% Amr::coarseTimeStep() 10 3.349 3.349 3.349 93.82% Amr::timeStep() 10 3.336 3.337 3.338 93.50% Castro::advance() 10 3.32 3.321 3.321 93.03% Castro::subcycle_advance_ctu() 10 3.233 3.24 3.247 90.94% Castro::do_advance_ctu() 10 3.233 3.24 3.246 90.94% Castro::construct_ctu_hydro_source() 10 2.357 2.383 2.412 67.57% Gravity::make_radial_gravity() 21 0.3519 0.3631 0.3736 10.46% Gravity::get_new_grav_vector() 11 0.234 0.2354 0.2368 6.63% Castro::construct_old_gravity() 10 0.2064 0.2143 0.2241 6.28% Gravity::get_old_grav_vector() 10 0.2056 0.2135 0.2234 6.26% Castro::construct_new_gravity() 10 0.2069 0.2084 0.2105 5.90% Amr::init() 1 0.2027 0.2028 0.203 5.69% FillPatchIterator::Initialize 41 0.1635 0.1783 0.1951 5.46% Castro::initialize_do_advance() 10 0.1682 0.1799 0.1926 5.39% Amr::initialInit() 1 0.1859 0.1862 0.1866 5.23% Amr::InitializeInit() 1 0.06025 0.1055 0.1552 4.35% Amr::defBaseLevel() 1 0.06024 0.1055 0.1552 4.35% FillPatchSingleLevel 41 0.1187 0.1305 0.1446 4.05% Castro::expand_state() 10 0.1096 0.1224 0.1359 3.81% Castro::initData() 1 0.04386 0.08614 0.1322 3.70% Castro::estTimeStep() 21 0.02466 0.08185 0.1292 3.62% Amr::FinalizeInit() 1 0.03066 0.08072 0.126 3.53% Castro::clean_state() 62 0.1159 0.119 0.1238 3.47% FabArray::ParallelCopy() 41 0.07987 0.09195 0.1028 2.88% Castro::do_old_sources() 10 0.09381 0.09665 0.09979 2.80% Castro::computeInitialDt() 2 0.002148 0.05193 0.0972 2.72% Castro::initialize_advance() 10 0.07078 0.07693 0.08426 2.36% FabArray::setVal() 143 0.06187 0.07339 0.08365 2.34% amrex::Copy() 193 0.0697 0.07557 0.0831 2.33% Castro::do_new_sources() 10 0.06013 0.06862 0.07721 2.16% check_for_negative_density() 10 0.02468 0.05152 0.07663 2.15% Castro::computeTemp() 63 0.06846 0.07101 0.07395 2.07% FabArray::ParallelCopy_finish() 41 0.0352 0.04879 0.05863 1.64% Castro::reset_internal_energy(MultiFab) 63 0.04882 0.05063 0.05289 1.48% Castro::reset_internal_energy(Fab) 1008 0.04852 0.05033 0.05256 1.47% FabArray::ParallelCopy_nowait() 41 0.04119 0.04308 0.0446 1.25% Castro::normalize_species() 62 0.04132 0.04246 0.04428 1.24% StateDataPhysBCFunct::() 41 0.03389 0.03851 0.04181 1.17% StateData::FillBoundary(geom) 41 0.03377 0.03841 0.04172 1.17% Castro::finalize_do_advance() 10 0.01598 0.02623 0.03617 1.01% Castro::construct_new_source() 50 0.02945 0.03221 0.03546 0.99% Gravity::interpolate_monopole_grav() 21 0.02838 0.02881 0.02963 0.83% Castro::construct_new_gravity_source() 10 0.02309 0.02584 0.02903 0.81% Castro::post_init() 1 0.02816 0.02831 0.02857 0.80% Amr::writePlotFile() 2 0.02656 0.02682 0.0271 0.76% VisMF::Write(FabArray) 2 0.01336 0.01394 0.01694 0.47% Castro::post_timestep() 10 0.01535 0.01597 0.01663 0.47% Castro::apply_source_to_state() 20 0.01381 0.01476 0.01546 0.43% FabArray::Saxpy() 20 0.01377 0.01471 0.01541 0.43% Castro::Castro() 1 0.0103 0.01206 0.01451 0.41% FabArray::setDomainBndry() 41 0.008726 0.01211 0.01369 0.38% Castro::construct_old_source() 50 0.00895 0.01094 0.01161 0.33% Castro::check_for_nan() 20 0.01002 0.01091 0.01153 0.32% Castro::construct_old_gravity_source() 10 0.008885 0.01086 0.01152 0.32% MultiFab::contains_nan() 20 0.009996 0.01089 0.01151 0.32% Castro::initMFs() 1 0.006815 0.008299 0.0102 0.29% Castro::computeNewDt() 9 0.008763 0.00877 0.008785 0.25% AmrLevel::AmrLevel(dm) 1 0.005691 0.007119 0.008343 0.23% StateData::define() 4 0.005674 0.007099 0.008323 0.23% Castro::enforce_min_density() 62 0.005853 0.006341 0.006725 0.19% Castro::swap_state_time_levels() 10 0.00359 0.004903 0.005532 0.15% Castro::finalize_advance() 10 0.002776 0.003324 0.003986 0.11% Castro::buildMetrics() 1 0.001732 0.002198 0.002608 0.07% Castro::post_regrid() 1 0.001525 0.001656 0.001875 0.05% Amr::InitAmr() 1 0.0003044 0.0004218 0.0005121 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.23e-05 0.0001362 0.0002817 0.01% DistributionMapping::LeastUsedCPUs() 1 6.733e-06 0.0001299 0.0002734 0.01% FabArrayBase::getCPC() 41 6.465e-05 9.1e-05 0.000113 0.00% Castro::enforce_consistent_e() 1 7.728e-05 9.05e-05 0.0001043 0.00% Amr::writeSmallPlotFile() 1 2.562e-05 5.76e-05 6.954e-05 0.00% Castro::enforce_speed_limit() 62 2.174e-05 2.863e-05 3.398e-05 0.00% FabArrayBase::CPC::define() 2 2.214e-05 2.598e-05 3.16e-05 0.00% Amr::initSubcycle() 1 9.184e-06 1.312e-05 1.919e-05 0.00% Gravity::swapTimeLevels() 10 1.323e-05 1.51e-05 1.822e-05 0.00% Gravity::set_mass_offset() 10 8.458e-06 1.001e-05 1.156e-05 0.00% Castro::FluxRegCrseInit 10 7.088e-06 8.916e-06 1.105e-05 0.00% Castro::create_source_corrector() 10 7.924e-06 8.736e-06 9.575e-06 0.00% Castro::retry_advance_ctu() 10 6.64e-06 7.672e-06 8.234e-06 0.00% Castro::FluxRegFineAdd() 10 1.978e-06 2.244e-06 2.827e-06 0.00% DistributionMapping::Distribute() 1 9.16e-07 1.217e-06 1.833e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 37 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-14-g7c7a8fb1fff5) finalized