MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-15-gcc7a5c1171bb) initialized Starting run at 22:49:03 UTC on 2023-06-10. Successfully read inputs file ... Castro git describe: 23.06-19-g24e28ea23 AMReX git describe: 23.06-15-gcc7a5c117 Microphysics git describe: 23.06-10-g3b44dee2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016311285 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.376586866 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.388967105 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329173621 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329074581 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.363008993 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335070576 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311646206 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310900188 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311117077 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311097569 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01040448 seconds Ending run at 22:49:06 UTC on 2023-06-10. Run time = 3.586849345 Run time without initialization = 3.384425894 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.586 ... 3.587 ... 3.587 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2817 2.3505 2.4282 67.70% Gravity::make_radial_gravity() 21 0.3236 0.3368 0.3468 9.67% check_for_negative_density() 10 0.03259 0.1129 0.182 5.07% Castro::initData() 1 0.03829 0.08233 0.1265 3.53% Castro::estTimeStep() 21 0.03429 0.08064 0.1168 3.26% FabArray::setVal() 143 0.0652 0.07314 0.0849 2.37% amrex::Copy() 193 0.06355 0.07194 0.08029 2.24% FabArray::ParallelCopy_finish() 41 0.03559 0.04709 0.06124 1.71% Castro::reset_internal_energy(Fab) 1008 0.04664 0.04956 0.05119 1.43% Castro::normalize_species() 62 0.04095 0.04177 0.04332 1.21% FabArray::ParallelCopy_nowait() 41 0.0368 0.04103 0.0425 1.18% StateData::FillBoundary(geom) 41 0.03431 0.03655 0.03861 1.08% FillPatchIterator::Initialize 41 0.02919 0.03332 0.03578 1.00% Castro::construct_new_gravity_source() 10 0.02241 0.02507 0.02861 0.80% Gravity::interpolate_monopole_grav() 21 0.02776 0.02802 0.02828 0.79% Castro::initialize_do_advance() 10 0.0121 0.0181 0.02161 0.60% Castro::computeTemp() 63 0.01694 0.01971 0.02135 0.60% VisMF::Write(FabArray) 2 0.0137 0.01439 0.01688 0.47% Castro::initialize_advance() 10 0.009742 0.01271 0.01575 0.44% FabArray::Saxpy() 20 0.01319 0.01417 0.01509 0.42% MultiFab::contains_nan() 20 0.01043 0.01137 0.01298 0.36% FabArray::setDomainBndry() 41 0.008611 0.01117 0.01251 0.35% Castro::construct_old_gravity_source() 10 0.007579 0.01025 0.01084 0.30% Amr::writePlotFile() 2 0.007418 0.009842 0.01063 0.30% Castro::initMFs() 1 0.006935 0.008222 0.01037 0.29% StateData::define() 4 0.005756 0.00676 0.008531 0.24% main() 1 0.005672 0.006167 0.006598 0.18% Castro::construct_new_source() 50 0.005837 0.006212 0.006512 0.18% Castro::enforce_min_density() 62 0.005775 0.00612 0.006391 0.18% Gravity::get_new_grav_vector() 11 0.003162 0.00376 0.005723 0.16% Castro::swap_state_time_levels() 10 0.00334 0.004488 0.004775 0.13% Amr::coarseTimeStep() 10 0.001416 0.002681 0.004025 0.11% Gravity::get_old_grav_vector() 10 0.001788 0.002293 0.002718 0.08% Castro::buildMetrics() 1 0.001633 0.001935 0.00245 0.07% Castro::finalize_do_advance() 10 0.0006668 0.001913 0.002386 0.07% Castro::expand_state() 10 0.0006982 0.0009394 0.001081 0.03% Amr::InitAmr() 1 0.0002717 0.0003582 0.000497 0.01% Amr::timeStep() 10 0.0001779 0.0002456 0.0004334 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000271 0.0002878 0.0003246 0.01% DistributionMapping::LeastUsedCPUs() 1 6.526e-06 0.0001827 0.0002842 0.01% Castro::clean_state() 62 0.0001333 0.0001444 0.0001703 0.00% Castro::do_old_sources() 10 0.0001202 0.000153 0.0001658 0.00% StateDataPhysBCFunct::() 41 7.89e-05 9.657e-05 0.0001234 0.00% Castro::finalize_advance() 10 8.52e-05 0.0001035 0.0001132 0.00% Castro::do_advance_ctu() 10 7.713e-05 8.857e-05 0.0001044 0.00% FabArray::ParallelCopy() 41 6.799e-05 8.013e-05 9.698e-05 0.00% Castro::enforce_consistent_e() 1 7.842e-05 8.602e-05 9.529e-05 0.00% Castro::Castro() 1 6.164e-05 7.244e-05 9.362e-05 0.00% Amr::FinalizeInit() 1 3.876e-06 1.576e-05 8.648e-05 0.00% FillPatchSingleLevel 41 6.39e-05 7.056e-05 8.342e-05 0.00% Castro::construct_old_source() 50 5.079e-05 6.961e-05 8.062e-05 0.00% FabArrayBase::getCPC() 41 4.298e-05 5.346e-05 7.627e-05 0.00% Castro::subcycle_advance_ctu() 10 3.884e-05 5.212e-05 7.513e-05 0.00% Castro::do_new_sources() 10 5.212e-05 6.388e-05 7.348e-05 0.00% Amr::writeSmallPlotFile() 1 2.604e-05 5.154e-05 6.405e-05 0.00% Castro::apply_source_to_state() 20 3.388e-05 4.802e-05 6.293e-05 0.00% Castro::construct_new_gravity() 10 3.339e-05 4.229e-05 5.697e-05 0.00% Amr::defBaseLevel() 1 3.716e-05 4.409e-05 5.236e-05 0.00% Castro::advance() 10 3.475e-05 4.14e-05 5.143e-05 0.00% Castro::construct_old_gravity() 10 3.436e-05 4.135e-05 4.845e-05 0.00% FabArrayBase::CPC::define() 2 2.031e-05 2.452e-05 3.73e-05 0.00% Castro::enforce_speed_limit() 62 2.357e-05 2.557e-05 2.881e-05 0.00% Castro::check_for_nan() 20 2.033e-05 2.263e-05 2.503e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.443e-05 2.052e-05 2.425e-05 0.00% Gravity::swapTimeLevels() 10 1.127e-05 1.62e-05 1.909e-05 0.00% Amr::initSubcycle() 1 9.371e-06 1.147e-05 1.61e-05 0.00% Gravity::set_mass_offset() 10 9.595e-06 1.217e-05 1.546e-05 0.00% Castro::post_timestep() 10 1.107e-05 1.357e-05 1.454e-05 0.00% Castro::computeNewDt() 9 7.27e-06 9.88e-06 1.212e-05 0.00% Castro::post_init() 1 2.701e-06 4.76e-06 1.095e-05 0.00% Castro::create_source_corrector() 10 7.794e-06 8.883e-06 1.06e-05 0.00% Castro::FluxRegCrseInit 10 7.523e-06 9.54e-06 1.036e-05 0.00% Castro::retry_advance_ctu() 10 6.062e-06 7.59e-06 9.508e-06 0.00% Amr::initialInit() 1 1.336e-06 2.566e-06 8.422e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.843e-06 4.718e-06 6.15e-06 0.00% Amr::InitializeInit() 1 1.935e-06 2.764e-06 5.295e-06 0.00% Castro::post_regrid() 1 1.726e-06 2.995e-06 4.735e-06 0.00% Castro::computeInitialDt() 2 3.569e-06 4.043e-06 4.511e-06 0.00% Amr::init() 1 2.015e-06 2.446e-06 3.303e-06 0.00% Castro::FluxRegFineAdd() 10 1.957e-06 2.235e-06 2.664e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.093e-06 1.442e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.586 3.587 3.587 100.00% Amr::coarseTimeStep() 10 3.367 3.367 3.367 93.88% Amr::timeStep() 10 3.354 3.355 3.356 93.57% Castro::advance() 10 3.338 3.339 3.34 93.10% Castro::subcycle_advance_ctu() 10 3.252 3.258 3.265 91.03% Castro::do_advance_ctu() 10 3.252 3.258 3.265 91.02% Castro::construct_ctu_hydro_source() 10 2.481 2.485 2.489 69.40% Gravity::make_radial_gravity() 21 0.3397 0.3532 0.3644 10.16% Gravity::get_new_grav_vector() 11 0.2335 0.2368 0.2393 6.67% Castro::construct_new_gravity() 10 0.2063 0.2089 0.2106 5.87% Castro::construct_old_gravity() 10 0.191 0.1995 0.208 5.80% Gravity::get_old_grav_vector() 10 0.1902 0.1988 0.2074 5.78% Amr::init() 1 0.2017 0.2019 0.202 5.63% Amr::initialInit() 1 0.185 0.1853 0.1855 5.17% check_for_negative_density() 10 0.03259 0.1129 0.182 5.07% Castro::initialize_do_advance() 10 0.1577 0.1712 0.1816 5.06% FillPatchIterator::Initialize 41 0.1552 0.1695 0.1803 5.03% Amr::InitializeInit() 1 0.05839 0.1051 0.1534 4.28% Amr::defBaseLevel() 1 0.05838 0.1051 0.1534 4.28% FillPatchSingleLevel 41 0.1136 0.125 0.135 3.76% Castro::initData() 1 0.04195 0.08609 0.1301 3.63% Amr::FinalizeInit() 1 0.03178 0.0802 0.1269 3.54% Castro::expand_state() 10 0.1015 0.1156 0.1266 3.53% Castro::clean_state() 62 0.1105 0.1167 0.1213 3.38% Castro::estTimeStep() 21 0.03429 0.08064 0.1168 3.26% FabArray::ParallelCopy() 41 0.0778 0.08828 0.09823 2.74% Castro::computeInitialDt() 2 0.002047 0.05054 0.09731 2.71% Castro::do_old_sources() 10 0.0916 0.09288 0.09538 2.66% FabArray::setVal() 143 0.0652 0.07314 0.0849 2.37% Castro::initialize_advance() 10 0.07046 0.07716 0.08349 2.33% amrex::Copy() 193 0.06355 0.07194 0.08029 2.24% Castro::do_new_sources() 10 0.05895 0.06645 0.07665 2.14% Castro::computeTemp() 63 0.06386 0.06956 0.0724 2.02% FabArray::ParallelCopy_finish() 41 0.03559 0.04709 0.06124 1.71% Castro::reset_internal_energy(MultiFab) 63 0.04692 0.04985 0.05148 1.44% Castro::reset_internal_energy(Fab) 1008 0.04664 0.04956 0.05119 1.43% Castro::normalize_species() 62 0.04095 0.04177 0.04332 1.21% FabArray::ParallelCopy_nowait() 41 0.0369 0.0411 0.04257 1.19% StateDataPhysBCFunct::() 41 0.03439 0.03665 0.03871 1.08% StateData::FillBoundary(geom) 41 0.03431 0.03655 0.03861 1.08% Castro::construct_new_source() 50 0.02866 0.03129 0.03509 0.98% Castro::finalize_do_advance() 10 0.01287 0.02327 0.03119 0.87% Castro::post_init() 1 0.02886 0.02912 0.02934 0.82% Castro::construct_new_gravity_source() 10 0.02241 0.02507 0.02861 0.80% Gravity::interpolate_monopole_grav() 21 0.02776 0.02802 0.02828 0.79% Amr::writePlotFile() 2 0.02695 0.02716 0.02731 0.76% VisMF::Write(FabArray) 2 0.0137 0.01439 0.01688 0.47% Castro::post_timestep() 10 0.01482 0.01595 0.01668 0.46% Castro::apply_source_to_state() 20 0.01323 0.01422 0.01514 0.42% FabArray::Saxpy() 20 0.01319 0.01417 0.01509 0.42% Castro::Castro() 1 0.01029 0.01194 0.01467 0.41% Castro::check_for_nan() 20 0.01045 0.01139 0.01301 0.36% MultiFab::contains_nan() 20 0.01043 0.01137 0.01298 0.36% FabArray::setDomainBndry() 41 0.008611 0.01117 0.01251 0.35% Castro::construct_old_source() 50 0.007648 0.01032 0.01092 0.30% Castro::construct_old_gravity_source() 10 0.007579 0.01025 0.01084 0.30% Castro::initMFs() 1 0.006935 0.008222 0.01037 0.29% Castro::computeNewDt() 9 0.00875 0.008754 0.008759 0.24% AmrLevel::AmrLevel(dm) 1 0.005773 0.00678 0.008554 0.24% StateData::define() 4 0.005756 0.00676 0.008531 0.24% Castro::enforce_min_density() 62 0.005775 0.00612 0.006391 0.18% Castro::swap_state_time_levels() 10 0.00334 0.004488 0.004775 0.13% Castro::finalize_advance() 10 0.002944 0.003473 0.004101 0.11% Castro::buildMetrics() 1 0.00175 0.002088 0.002675 0.07% Castro::post_regrid() 1 0.001534 0.001633 0.002033 0.06% Amr::InitAmr() 1 0.0002813 0.0003696 0.0005124 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.163e-05 0.0001885 0.0002909 0.01% DistributionMapping::LeastUsedCPUs() 1 6.526e-06 0.0001827 0.0002842 0.01% FabArrayBase::getCPC() 41 6.988e-05 7.798e-05 9.878e-05 0.00% Castro::enforce_consistent_e() 1 7.842e-05 8.602e-05 9.529e-05 0.00% Amr::writeSmallPlotFile() 1 2.604e-05 5.154e-05 6.405e-05 0.00% FabArrayBase::CPC::define() 2 2.031e-05 2.452e-05 3.73e-05 0.00% Castro::enforce_speed_limit() 62 2.357e-05 2.557e-05 2.881e-05 0.00% Gravity::swapTimeLevels() 10 1.127e-05 1.62e-05 1.909e-05 0.00% Amr::initSubcycle() 1 9.371e-06 1.147e-05 1.61e-05 0.00% Gravity::set_mass_offset() 10 9.595e-06 1.217e-05 1.546e-05 0.00% Castro::create_source_corrector() 10 7.794e-06 8.883e-06 1.06e-05 0.00% Castro::FluxRegCrseInit 10 7.523e-06 9.54e-06 1.036e-05 0.00% Castro::retry_advance_ctu() 10 6.062e-06 7.59e-06 9.508e-06 0.00% Castro::FluxRegFineAdd() 10 1.957e-06 2.235e-06 2.664e-06 0.00% DistributionMapping::Distribute() 1 9.13e-07 1.093e-06 1.442e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-15-gcc7a5c1171bb) finalized