MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-15-gcc7a5c1171bb) initialized Starting run at 05:28:50 UTC on 2023-06-12. Successfully read inputs file ... Castro git describe: 23.06-17-g448ec9434 AMReX git describe: 23.06-15-gcc7a5c117 Microphysics git describe: 23.06-10-g3b44dee2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015952035 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.37074873 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.359950326 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.359502971 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337171205 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368464266 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337629375 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313527496 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31334848 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313577732 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31317733 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010584407 seconds Ending run at 05:28:53 UTC on 2023-06-12. Run time = 3.588240914 Run time without initialization = 3.405306231 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.587 ... 3.588 ... 3.588 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3442 2.3853 2.4230 67.53% Gravity::make_radial_gravity() 21 0.3178 0.3294 0.3371 9.40% check_for_negative_density() 10 0.0458 0.08523 0.128 3.57% Castro::estTimeStep() 21 0.02072 0.06842 0.1153 3.21% Castro::initData() 1 0.03834 0.07687 0.1148 3.20% amrex::Copy() 193 0.07554 0.07939 0.08736 2.43% FabArray::setVal() 143 0.06722 0.07508 0.08368 2.33% FabArray::ParallelCopy_finish() 41 0.03667 0.04691 0.05626 1.57% Castro::reset_internal_energy(Fab) 1008 0.04802 0.04994 0.05122 1.43% FabArray::ParallelCopy_nowait() 41 0.04065 0.04338 0.04435 1.24% Castro::normalize_species() 62 0.04138 0.04198 0.04252 1.18% StateData::FillBoundary(geom) 41 0.03477 0.03753 0.0405 1.13% FillPatchIterator::Initialize 41 0.03045 0.03544 0.03782 1.05% Castro::construct_new_gravity_source() 10 0.02262 0.02564 0.02878 0.80% Gravity::interpolate_monopole_grav() 21 0.02827 0.02854 0.02874 0.80% Castro::initialize_do_advance() 10 0.01816 0.01974 0.02343 0.65% Castro::computeTemp() 63 0.01928 0.02005 0.02072 0.58% VisMF::Write(FabArray) 2 0.01368 0.01428 0.01701 0.47% FabArray::Saxpy() 20 0.01422 0.01482 0.01565 0.44% Castro::initialize_advance() 10 0.009575 0.01238 0.01531 0.43% FabArray::setDomainBndry() 41 0.01001 0.01236 0.01365 0.38% MultiFab::contains_nan() 20 0.01077 0.01144 0.01229 0.34% Castro::construct_old_gravity_source() 10 0.01014 0.01082 0.01125 0.31% Amr::writePlotFile() 2 0.006868 0.009771 0.01047 0.29% Castro::initMFs() 1 0.00688 0.007208 0.008991 0.25% main() 1 0.005204 0.006135 0.006886 0.19% Castro::construct_new_source() 50 0.006259 0.006472 0.006685 0.19% Castro::enforce_min_density() 62 0.005969 0.006218 0.00652 0.18% StateData::define() 4 0.005686 0.00588 0.006509 0.18% Gravity::get_new_grav_vector() 11 0.003193 0.004189 0.006127 0.17% Castro::swap_state_time_levels() 10 0.003544 0.00481 0.005119 0.14% Gravity::get_old_grav_vector() 10 0.001952 0.002605 0.003005 0.08% Amr::coarseTimeStep() 10 0.001115 0.00199 0.002907 0.08% Castro::finalize_do_advance() 10 0.001558 0.001854 0.002087 0.06% Castro::buildMetrics() 1 0.001621 0.001702 0.001994 0.06% Castro::expand_state() 10 0.0008296 0.001101 0.00125 0.03% Amr::InitAmr() 1 0.0002857 0.0003279 0.0004783 0.01% Amr::timeStep() 10 0.000175 0.0002429 0.0004394 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002733 0.0002924 0.00031 0.01% DistributionMapping::LeastUsedCPUs() 1 7.249e-06 0.0001494 0.0001976 0.01% Castro::do_old_sources() 10 0.0001238 0.0001504 0.0001777 0.00% Castro::clean_state() 62 0.0001337 0.0001453 0.0001506 0.00% StateDataPhysBCFunct::() 41 7.969e-05 9.438e-05 0.000129 0.00% Castro::finalize_advance() 10 7.666e-05 9.851e-05 0.0001169 0.00% Castro::do_advance_ctu() 10 7.469e-05 9.046e-05 0.0001132 0.00% FabArray::ParallelCopy() 41 6.706e-05 8.18e-05 9.424e-05 0.00% Castro::enforce_consistent_e() 1 7.689e-05 8.322e-05 9.119e-05 0.00% Castro::Castro() 1 6.399e-05 7.727e-05 8.946e-05 0.00% Castro::construct_old_source() 50 5.332e-05 7.086e-05 8.305e-05 0.00% FillPatchSingleLevel 41 6.1e-05 6.844e-05 7.574e-05 0.00% Amr::FinalizeInit() 1 3.993e-06 1.513e-05 7.198e-05 0.00% Castro::do_new_sources() 10 5.442e-05 6.457e-05 7.086e-05 0.00% FabArrayBase::getCPC() 41 4.417e-05 5.688e-05 7.071e-05 0.00% Amr::writeSmallPlotFile() 1 2.648e-05 4.25e-05 6.389e-05 0.00% Castro::subcycle_advance_ctu() 10 4.076e-05 5.067e-05 6.354e-05 0.00% Amr::defBaseLevel() 1 2.836e-05 4.273e-05 5.58e-05 0.00% Castro::apply_source_to_state() 20 4.055e-05 4.609e-05 5.479e-05 0.00% Castro::construct_new_gravity() 10 3.538e-05 4.279e-05 4.903e-05 0.00% Castro::advance() 10 3.364e-05 4.049e-05 4.799e-05 0.00% Castro::construct_old_gravity() 10 3.406e-05 3.984e-05 4.711e-05 0.00% FabArrayBase::CPC::define() 2 2.116e-05 2.471e-05 3.142e-05 0.00% Castro::enforce_speed_limit() 62 2.201e-05 2.393e-05 2.537e-05 0.00% Castro::check_for_nan() 20 2.078e-05 2.211e-05 2.428e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.231e-05 1.719e-05 2.078e-05 0.00% Gravity::swapTimeLevels() 10 1.392e-05 1.568e-05 2.044e-05 0.00% Castro::post_timestep() 10 1.253e-05 1.493e-05 1.766e-05 0.00% Gravity::set_mass_offset() 10 9.305e-06 1.219e-05 1.39e-05 0.00% Amr::initSubcycle() 1 8.758e-06 9.687e-06 1.116e-05 0.00% Castro::computeNewDt() 9 7.572e-06 9.243e-06 1.115e-05 0.00% Castro::create_source_corrector() 10 7.925e-06 9.318e-06 1.093e-05 0.00% Castro::FluxRegCrseInit 10 6.576e-06 8.258e-06 1.002e-05 0.00% Castro::retry_advance_ctu() 10 6.669e-06 7.549e-06 9.09e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.108e-06 4.745e-06 6.931e-06 0.00% Amr::InitializeInit() 1 1.828e-06 2.672e-06 5.743e-06 0.00% Castro::computeInitialDt() 2 3.213e-06 4.021e-06 4.955e-06 0.00% Castro::post_init() 1 3.004e-06 3.456e-06 4.314e-06 0.00% Castro::post_regrid() 1 1.481e-06 3.037e-06 4.264e-06 0.00% Castro::FluxRegFineAdd() 10 1.806e-06 2.188e-06 3.152e-06 0.00% Amr::init() 1 1.942e-06 2.394e-06 2.994e-06 0.00% Amr::initialInit() 1 1.605e-06 2.085e-06 2.41e-06 0.00% DistributionMapping::Distribute() 1 9.1e-07 1.096e-06 1.578e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.587 3.588 3.588 100.00% Amr::coarseTimeStep() 10 3.388 3.388 3.388 94.42% Amr::timeStep() 10 3.375 3.376 3.377 94.12% Castro::advance() 10 3.359 3.36 3.361 93.66% Castro::subcycle_advance_ctu() 10 3.274 3.28 3.286 91.57% Castro::do_advance_ctu() 10 3.274 3.28 3.286 91.57% Castro::construct_ctu_hydro_source() 10 2.489 2.492 2.496 69.55% Gravity::make_radial_gravity() 21 0.3353 0.3475 0.3546 9.88% Gravity::get_new_grav_vector() 11 0.2293 0.231 0.2332 6.50% Castro::construct_old_gravity() 10 0.195 0.2029 0.2094 5.84% Gravity::get_old_grav_vector() 10 0.1941 0.2022 0.2087 5.81% Castro::construct_new_gravity() 10 0.2052 0.2063 0.2077 5.79% Castro::initialize_do_advance() 10 0.1693 0.1807 0.1892 5.27% FillPatchIterator::Initialize 41 0.1652 0.176 0.1873 5.22% Amr::init() 1 0.1823 0.1824 0.1825 5.09% Amr::initialInit() 1 0.1659 0.1662 0.1663 4.64% Amr::InitializeInit() 1 0.05967 0.09846 0.1376 3.83% Amr::defBaseLevel() 1 0.05967 0.09846 0.1376 3.83% FillPatchSingleLevel 41 0.1171 0.1282 0.1364 3.80% Castro::expand_state() 10 0.1111 0.1228 0.1328 3.70% check_for_negative_density() 10 0.0458 0.08523 0.128 3.57% Castro::clean_state() 62 0.1145 0.1177 0.12 3.35% Castro::initData() 1 0.0424 0.08079 0.1183 3.30% Castro::estTimeStep() 21 0.02072 0.06842 0.1153 3.21% Amr::FinalizeInit() 1 0.02851 0.06769 0.1065 2.97% FabArray::ParallelCopy() 41 0.08018 0.09046 0.1005 2.80% Castro::do_old_sources() 10 0.09471 0.09695 0.09902 2.76% amrex::Copy() 193 0.07554 0.07939 0.08736 2.43% FabArray::setVal() 143 0.06722 0.07508 0.08368 2.33% Castro::initialize_advance() 10 0.07066 0.07628 0.08279 2.31% Castro::computeInitialDt() 2 0.002035 0.04114 0.07998 2.23% Castro::do_new_sources() 10 0.06062 0.06876 0.07697 2.15% Castro::computeTemp() 63 0.06759 0.07029 0.07174 2.00% FabArray::ParallelCopy_finish() 41 0.03667 0.04691 0.05626 1.57% Castro::reset_internal_energy(MultiFab) 63 0.04831 0.05024 0.05153 1.44% Castro::reset_internal_energy(Fab) 1008 0.04802 0.04994 0.05122 1.43% FabArray::ParallelCopy_nowait() 41 0.04074 0.04347 0.04442 1.24% Castro::normalize_species() 62 0.04138 0.04198 0.04252 1.18% StateDataPhysBCFunct::() 41 0.03485 0.03763 0.0406 1.13% StateData::FillBoundary(geom) 41 0.03477 0.03753 0.0405 1.13% Castro::construct_new_source() 50 0.029 0.03211 0.03536 0.99% Castro::construct_new_gravity_source() 10 0.02262 0.02564 0.02878 0.80% Gravity::interpolate_monopole_grav() 21 0.02827 0.02854 0.02874 0.80% Castro::finalize_do_advance() 10 0.01218 0.02063 0.02867 0.80% Amr::writePlotFile() 2 0.02678 0.02696 0.02723 0.76% Castro::post_init() 1 0.02538 0.02596 0.02617 0.73% VisMF::Write(FabArray) 2 0.01368 0.01428 0.01701 0.47% Castro::post_timestep() 10 0.01569 0.01609 0.0164 0.46% Castro::apply_source_to_state() 20 0.01427 0.01486 0.01569 0.44% FabArray::Saxpy() 20 0.01422 0.01482 0.01565 0.44% FabArray::setDomainBndry() 41 0.01001 0.01236 0.01365 0.38% Castro::Castro() 1 0.01127 0.01158 0.01255 0.35% Castro::check_for_nan() 20 0.01079 0.01147 0.01231 0.34% MultiFab::contains_nan() 20 0.01077 0.01144 0.01229 0.34% Castro::construct_old_source() 50 0.0102 0.01089 0.01134 0.32% Castro::construct_old_gravity_source() 10 0.01014 0.01082 0.01125 0.31% Castro::initMFs() 1 0.00688 0.007208 0.008991 0.25% Castro::computeNewDt() 9 0.008524 0.008529 0.008535 0.24% AmrLevel::AmrLevel(dm) 1 0.005706 0.005897 0.006528 0.18% Castro::enforce_min_density() 62 0.005969 0.006218 0.00652 0.18% StateData::define() 4 0.005686 0.00588 0.006509 0.18% Castro::swap_state_time_levels() 10 0.003544 0.00481 0.005119 0.14% Castro::finalize_advance() 10 0.002965 0.003417 0.003904 0.11% Castro::post_regrid() 1 0.001515 0.001659 0.00217 0.06% Castro::buildMetrics() 1 0.001752 0.001834 0.002165 0.06% Amr::InitAmr() 1 0.000295 0.0003376 0.0004887 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.283e-05 0.0001553 0.0002061 0.01% DistributionMapping::LeastUsedCPUs() 1 7.249e-06 0.0001494 0.0001976 0.01% FabArrayBase::getCPC() 41 6.837e-05 8.159e-05 9.726e-05 0.00% Castro::enforce_consistent_e() 1 7.689e-05 8.322e-05 9.119e-05 0.00% Amr::writeSmallPlotFile() 1 2.648e-05 4.25e-05 6.389e-05 0.00% FabArrayBase::CPC::define() 2 2.116e-05 2.471e-05 3.142e-05 0.00% Castro::enforce_speed_limit() 62 2.201e-05 2.393e-05 2.537e-05 0.00% Gravity::swapTimeLevels() 10 1.392e-05 1.568e-05 2.044e-05 0.00% Gravity::set_mass_offset() 10 9.305e-06 1.219e-05 1.39e-05 0.00% Amr::initSubcycle() 1 8.758e-06 9.687e-06 1.116e-05 0.00% Castro::create_source_corrector() 10 7.925e-06 9.318e-06 1.093e-05 0.00% Castro::FluxRegCrseInit 10 6.576e-06 8.258e-06 1.002e-05 0.00% Castro::retry_advance_ctu() 10 6.669e-06 7.549e-06 9.09e-06 0.00% Castro::FluxRegFineAdd() 10 1.806e-06 2.188e-06 3.152e-06 0.00% DistributionMapping::Distribute() 1 9.1e-07 1.096e-06 1.578e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 53 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-15-gcc7a5c1171bb) finalized