MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-17-g0375e78e7838) initialized Starting run at 05:41:58 UTC on 2023-06-13. Successfully read inputs file ... Castro git describe: 23.06-17-g448ec9434 AMReX git describe: 23.06-17-g0375e78e7 Microphysics git describe: 23.06-12-g8c5b63da reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016519195 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362446572 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.343187594 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33233118 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332632148 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356815635 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.364412345 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317934493 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316216865 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317037765 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317520442 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010572288 seconds Ending run at 05:42:02 UTC on 2023-06-13. Run time = 3.562970211 Run time without initialization = 3.378587652 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.562 ... 3.563 ... 3.563 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2751 2.3606 2.4209 67.94% Gravity::make_radial_gravity() 21 0.3235 0.3292 0.3428 9.62% check_for_negative_density() 10 0.01189 0.07325 0.1602 4.50% Castro::estTimeStep() 21 0.04402 0.07057 0.1219 3.42% Castro::initData() 1 0.03905 0.08299 0.1143 3.21% FabArray::ParallelCopy_finish() 41 0.03477 0.06642 0.1016 2.85% FabArray::setVal() 143 0.06357 0.07231 0.08699 2.44% amrex::Copy() 193 0.06455 0.07354 0.08599 2.41% Castro::reset_internal_energy(Fab) 1008 0.04763 0.04983 0.05098 1.43% Castro::normalize_species() 62 0.04054 0.04185 0.0426 1.20% FabArray::ParallelCopy_nowait() 41 0.03621 0.04031 0.04223 1.19% FillPatchIterator::Initialize 41 0.02811 0.03427 0.04083 1.15% StateData::FillBoundary(geom) 41 0.03233 0.03522 0.03887 1.09% Castro::construct_new_gravity_source() 10 0.02155 0.02497 0.03487 0.98% Gravity::interpolate_monopole_grav() 21 0.02745 0.02811 0.02862 0.80% Castro::initialize_do_advance() 10 0.01181 0.01878 0.02473 0.69% Castro::computeTemp() 63 0.01778 0.01945 0.0202 0.57% VisMF::Write(FabArray) 2 0.01348 0.01435 0.01749 0.49% FabArray::Saxpy() 20 0.01224 0.01425 0.01548 0.43% Castro::initialize_advance() 10 0.004116 0.01029 0.01446 0.41% MultiFab::contains_nan() 20 0.01122 0.01198 0.01238 0.35% FabArray::setDomainBndry() 41 0.008524 0.01097 0.01224 0.34% Amr::writePlotFile() 2 0.007144 0.01033 0.01192 0.33% Castro::construct_old_gravity_source() 10 0.007427 0.01016 0.01076 0.30% Castro::initMFs() 1 0.007131 0.008227 0.01073 0.30% Amr::coarseTimeStep() 10 0.002019 0.00665 0.009394 0.26% StateData::define() 4 0.006046 0.006837 0.008599 0.24% Castro::enforce_min_density() 62 0.005841 0.006284 0.006831 0.19% main() 1 0.005254 0.006217 0.00661 0.19% Castro::construct_new_source() 50 0.005663 0.006336 0.006583 0.18% Castro::swap_state_time_levels() 10 0.00341 0.004568 0.005555 0.16% Gravity::get_new_grav_vector() 11 0.002973 0.00368 0.004103 0.12% Gravity::get_old_grav_vector() 10 0.001929 0.002425 0.002783 0.08% Castro::buildMetrics() 1 0.001696 0.001935 0.002486 0.07% Castro::finalize_do_advance() 10 0.0006577 0.00179 0.002196 0.06% Castro::expand_state() 10 0.0006592 0.0008257 0.000996 0.03% Amr::InitAmr() 1 0.0002889 0.0004224 0.0006052 0.02% Amr::timeStep() 10 0.0001823 0.0002487 0.0004398 0.01% DistributionMapping::LeastUsedCPUs() 1 7.928e-06 0.0002284 0.0003814 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000277 0.0002875 0.0002983 0.01% Castro::do_old_sources() 10 0.000145 0.0001557 0.000178 0.00% Castro::clean_state() 62 0.0001365 0.0001522 0.0001713 0.00% Castro::finalize_advance() 10 0.0001059 0.0001218 0.0001358 0.00% StateDataPhysBCFunct::() 41 8.355e-05 9.713e-05 0.000128 0.00% Castro::do_advance_ctu() 10 8.045e-05 0.0001016 0.0001227 0.00% Castro::do_new_sources() 10 5.72e-05 6.776e-05 0.0001044 0.00% Castro::enforce_consistent_e() 1 7.975e-05 9.072e-05 0.0001039 0.00% FillPatchSingleLevel 41 6.691e-05 7.523e-05 9.562e-05 0.00% FabArray::ParallelCopy() 41 7.006e-05 8.191e-05 9.534e-05 0.00% Amr::FinalizeInit() 1 3.875e-06 1.596e-05 9.372e-05 0.00% Castro::Castro() 1 5.838e-05 7.686e-05 9.197e-05 0.00% FabArrayBase::getCPC() 41 5.099e-05 6.103e-05 7.439e-05 0.00% Castro::construct_old_source() 50 5.19e-05 6.707e-05 7.419e-05 0.00% Castro::subcycle_advance_ctu() 10 3.977e-05 5.287e-05 7.337e-05 0.00% Castro::apply_source_to_state() 20 4.254e-05 5.058e-05 6.7e-05 0.00% Amr::writeSmallPlotFile() 1 2.863e-05 4.963e-05 6.305e-05 0.00% Castro::advance() 10 4.034e-05 4.576e-05 5.363e-05 0.00% Castro::construct_old_gravity() 10 3.463e-05 4.105e-05 5.325e-05 0.00% Amr::defBaseLevel() 1 2.514e-05 3.429e-05 5.082e-05 0.00% Castro::retry_advance_ctu() 10 6.784e-06 2.437e-05 4.482e-05 0.00% Castro::construct_new_gravity() 10 3.604e-05 3.98e-05 4.302e-05 0.00% Castro::post_timestep() 10 1.26e-05 2.178e-05 4.08e-05 0.00% Castro::enforce_speed_limit() 62 2.455e-05 2.703e-05 2.996e-05 0.00% Amr::initSubcycle() 1 8.721e-06 1.536e-05 2.967e-05 0.00% FabArrayBase::CPC::define() 2 2.071e-05 2.343e-05 2.84e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.458e-05 2.022e-05 2.57e-05 0.00% Castro::check_for_nan() 20 1.803e-05 2.031e-05 2.307e-05 0.00% Gravity::set_mass_offset() 10 9.539e-06 1.31e-05 1.788e-05 0.00% Gravity::swapTimeLevels() 10 1.259e-05 1.494e-05 1.688e-05 0.00% Castro::FluxRegCrseInit 10 7.614e-06 1.327e-05 1.628e-05 0.00% Castro::create_source_corrector() 10 6.741e-06 8.916e-06 1.311e-05 0.00% Castro::computeNewDt() 9 7.842e-06 9.943e-06 1.163e-05 0.00% Castro::post_init() 1 3.047e-06 4.498e-06 9.403e-06 0.00% Castro::post_regrid() 1 1.968e-06 3.421e-06 7.755e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.802e-06 5.014e-06 7.245e-06 0.00% DistributionMapping::Distribute() 1 8.56e-07 1.826e-06 5.819e-06 0.00% Castro::computeInitialDt() 2 3.213e-06 3.757e-06 5.247e-06 0.00% Amr::InitializeInit() 1 2.137e-06 2.935e-06 4.566e-06 0.00% Castro::FluxRegFineAdd() 10 1.873e-06 2.145e-06 2.699e-06 0.00% Amr::init() 1 1.711e-06 2.168e-06 2.586e-06 0.00% Amr::initialInit() 1 1.55e-06 1.791e-06 2.08e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.562 3.563 3.563 100.00% Amr::coarseTimeStep() 10 3.362 3.362 3.362 94.34% Amr::timeStep() 10 3.342 3.345 3.35 94.01% Castro::advance() 10 3.326 3.328 3.33 93.45% Castro::subcycle_advance_ctu() 10 3.239 3.25 3.259 91.47% Castro::do_advance_ctu() 10 3.239 3.25 3.259 91.47% Castro::construct_ctu_hydro_source() 10 2.452 2.455 2.458 68.98% Gravity::make_radial_gravity() 21 0.3401 0.3461 0.3563 10.00% Gravity::get_new_grav_vector() 11 0.2255 0.2264 0.227 6.37% Castro::construct_old_gravity() 10 0.1983 0.2034 0.2117 5.94% Gravity::get_old_grav_vector() 10 0.1975 0.2024 0.2111 5.92% FillPatchIterator::Initialize 41 0.1623 0.1875 0.2089 5.86% Castro::construct_new_gravity() 10 0.198 0.1987 0.1997 5.60% Castro::initialize_do_advance() 10 0.1731 0.1872 0.1986 5.58% Amr::init() 1 0.1836 0.1838 0.1839 5.16% FillPatchSingleLevel 41 0.1095 0.1423 0.1723 4.84% Amr::initialInit() 1 0.1669 0.1673 0.1675 4.70% check_for_negative_density() 10 0.01189 0.07325 0.1602 4.50% Castro::expand_state() 10 0.1138 0.131 0.1427 4.01% FabArray::ParallelCopy() 41 0.07491 0.1069 0.138 3.87% Amr::InitializeInit() 1 0.06075 0.1063 0.136 3.82% Amr::defBaseLevel() 1 0.06075 0.1063 0.136 3.82% Castro::estTimeStep() 21 0.04402 0.07057 0.1219 3.42% Castro::clean_state() 62 0.1129 0.1169 0.1189 3.34% Castro::initData() 1 0.04314 0.08695 0.1182 3.32% Amr::FinalizeInit() 1 0.03117 0.06094 0.1067 2.99% FabArray::ParallelCopy_finish() 41 0.03477 0.06642 0.1016 2.85% Castro::do_old_sources() 10 0.09417 0.09691 0.1002 2.81% FabArray::setVal() 143 0.06357 0.07231 0.08699 2.44% amrex::Copy() 193 0.06455 0.07354 0.08599 2.41% Castro::initialize_advance() 10 0.06327 0.07335 0.08425 2.36% Castro::do_new_sources() 10 0.06055 0.06584 0.08414 2.36% Castro::computeInitialDt() 2 0.002149 0.03184 0.07752 2.18% Castro::computeTemp() 63 0.06716 0.06957 0.07147 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04792 0.05012 0.05126 1.44% Castro::reset_internal_energy(Fab) 1008 0.04763 0.04983 0.05098 1.43% Castro::normalize_species() 62 0.04054 0.04185 0.0426 1.20% FabArray::ParallelCopy_nowait() 41 0.03632 0.0404 0.04232 1.19% Castro::construct_new_source() 50 0.02721 0.03131 0.04126 1.16% StateDataPhysBCFunct::() 41 0.03242 0.03531 0.03896 1.09% StateData::FillBoundary(geom) 41 0.03233 0.03522 0.03887 1.09% Castro::finalize_do_advance() 10 0.014 0.03201 0.0367 1.03% Castro::construct_new_gravity_source() 10 0.02155 0.02497 0.03487 0.98% Castro::post_init() 1 0.02844 0.02863 0.02879 0.81% Gravity::interpolate_monopole_grav() 21 0.02745 0.02811 0.02862 0.80% Amr::writePlotFile() 2 0.02672 0.0272 0.02748 0.77% Castro::post_timestep() 10 0.01594 0.01704 0.01976 0.55% VisMF::Write(FabArray) 2 0.01348 0.01435 0.01749 0.49% Castro::apply_source_to_state() 20 0.01229 0.0143 0.01555 0.44% FabArray::Saxpy() 20 0.01224 0.01425 0.01548 0.43% Castro::Castro() 1 0.01111 0.01224 0.01507 0.42% Castro::check_for_nan() 20 0.01124 0.012 0.0124 0.35% MultiFab::contains_nan() 20 0.01122 0.01198 0.01238 0.35% FabArray::setDomainBndry() 41 0.008524 0.01097 0.01224 0.34% Castro::construct_old_source() 50 0.007478 0.01023 0.01084 0.30% Castro::construct_old_gravity_source() 10 0.007427 0.01016 0.01076 0.30% Castro::initMFs() 1 0.007131 0.008227 0.01073 0.30% AmrLevel::AmrLevel(dm) 1 0.00606 0.006857 0.008621 0.24% StateData::define() 4 0.006046 0.006837 0.008599 0.24% Castro::computeNewDt() 9 0.008497 0.008521 0.008539 0.24% Castro::enforce_min_density() 62 0.005841 0.006284 0.006831 0.19% Castro::finalize_advance() 10 0.002878 0.004186 0.005899 0.17% Castro::swap_state_time_levels() 10 0.00341 0.004568 0.005555 0.16% Castro::buildMetrics() 1 0.001821 0.002091 0.002719 0.08% Castro::post_regrid() 1 0.001558 0.00164 0.001977 0.06% Amr::InitAmr() 1 0.0002983 0.0004378 0.0006349 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.505e-05 0.0002352 0.0003897 0.01% DistributionMapping::LeastUsedCPUs() 1 7.928e-06 0.0002284 0.0003814 0.01% Castro::enforce_consistent_e() 1 7.975e-05 9.072e-05 0.0001039 0.00% FabArrayBase::getCPC() 41 7.336e-05 8.446e-05 0.0001028 0.00% Amr::writeSmallPlotFile() 1 2.863e-05 4.963e-05 6.305e-05 0.00% Castro::retry_advance_ctu() 10 6.784e-06 2.437e-05 4.482e-05 0.00% Castro::enforce_speed_limit() 62 2.455e-05 2.703e-05 2.996e-05 0.00% Amr::initSubcycle() 1 8.721e-06 1.536e-05 2.967e-05 0.00% FabArrayBase::CPC::define() 2 2.071e-05 2.343e-05 2.84e-05 0.00% Gravity::set_mass_offset() 10 9.539e-06 1.31e-05 1.788e-05 0.00% Gravity::swapTimeLevels() 10 1.259e-05 1.494e-05 1.688e-05 0.00% Castro::FluxRegCrseInit 10 7.614e-06 1.327e-05 1.628e-05 0.00% Castro::create_source_corrector() 10 6.741e-06 8.916e-06 1.311e-05 0.00% DistributionMapping::Distribute() 1 8.56e-07 1.826e-06 5.819e-06 0.00% Castro::FluxRegFineAdd() 10 1.873e-06 2.145e-06 2.699e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 41 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-17-g0375e78e7838) finalized