MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-22-g6303e0abfae9) initialized Starting run at 14:01:39 UTC on 2023-06-15. Successfully read inputs file ... Castro git describe: 23.06-25-gc2fdb2009 AMReX git describe: 23.06-22-g6303e0abf Microphysics git describe: 23.06-14-ga0d8db09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016577284 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365857881 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338868087 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.371624817 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337980147 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.371208698 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.372233498 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315981767 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314972462 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315746905 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315813433 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010616965 seconds Ending run at 14:01:42 UTC on 2023-06-15. Run time = 3.623059235 Run time without initialization = 3.437766276 Average number of zones advanced per microsecond: 0.763 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.622 ... 3.623 ... 3.623 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3297 2.3772 2.4599 67.90% Gravity::make_radial_gravity() 21 0.3374 0.3478 0.3598 9.93% check_for_negative_density() 10 0.02388 0.1077 0.1563 4.31% Castro::initData() 1 0.03947 0.07883 0.1132 3.12% Castro::estTimeStep() 21 0.02417 0.06721 0.1131 3.12% FabArray::setVal() 143 0.06597 0.07346 0.08567 2.36% amrex::Copy() 193 0.06539 0.07476 0.083 2.29% FabArray::ParallelCopy_finish() 41 0.04206 0.05708 0.07447 2.06% Castro::reset_internal_energy(Fab) 1008 0.04846 0.05082 0.05183 1.43% Castro::normalize_species() 62 0.04176 0.04254 0.04462 1.23% FabArray::ParallelCopy_nowait() 41 0.03695 0.04155 0.04356 1.20% StateData::FillBoundary(geom) 41 0.03259 0.03659 0.04276 1.18% FillPatchIterator::Initialize 41 0.02947 0.03519 0.03819 1.05% Castro::construct_new_gravity_source() 10 0.02259 0.02528 0.02969 0.82% Gravity::interpolate_monopole_grav() 21 0.02869 0.02898 0.02941 0.81% Castro::initialize_do_advance() 10 0.01282 0.01868 0.02194 0.61% Castro::computeTemp() 63 0.01899 0.01996 0.0211 0.58% VisMF::Write(FabArray) 2 0.01336 0.01412 0.01719 0.47% Castro::initialize_advance() 10 0.009643 0.01247 0.01555 0.43% FabArray::Saxpy() 20 0.01397 0.01436 0.01469 0.41% FabArray::setDomainBndry() 41 0.009013 0.01172 0.01325 0.37% MultiFab::contains_nan() 20 0.01143 0.01217 0.01314 0.36% Castro::construct_old_gravity_source() 10 0.00729 0.01043 0.01117 0.31% Amr::writePlotFile() 2 0.007271 0.01011 0.01102 0.30% Castro::initMFs() 1 0.007324 0.007846 0.008342 0.23% StateData::define() 4 0.006039 0.006476 0.006749 0.19% Castro::enforce_min_density() 62 0.005831 0.006099 0.006565 0.18% Castro::construct_new_source() 50 0.00583 0.006212 0.006448 0.18% Castro::swap_state_time_levels() 10 0.003599 0.005094 0.006407 0.18% main() 1 0.005145 0.005826 0.006343 0.18% Gravity::get_new_grav_vector() 11 0.003027 0.004232 0.006187 0.17% Amr::coarseTimeStep() 10 0.001487 0.002451 0.003185 0.09% Gravity::get_old_grav_vector() 10 0.001729 0.002519 0.002916 0.08% Castro::buildMetrics() 1 0.001743 0.001857 0.001975 0.05% Castro::finalize_do_advance() 10 0.000624 0.001535 0.001868 0.05% Castro::expand_state() 10 0.0007083 0.0008136 0.0008905 0.02% Amr::timeStep() 10 0.0001816 0.0002428 0.0004436 0.01% Amr::InitAmr() 1 0.0002686 0.000335 0.0004328 0.01% DistributionMapping::LeastUsedCPUs() 1 9.153e-06 0.0002858 0.0003796 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002806 0.0002946 0.0003171 0.01% Castro::clean_state() 62 0.000134 0.0001515 0.0001977 0.01% Castro::do_old_sources() 10 0.0001202 0.0001498 0.0001787 0.00% StateDataPhysBCFunct::() 41 8.7e-05 0.0001007 0.0001439 0.00% Castro::finalize_advance() 10 8.269e-05 0.0001008 0.0001291 0.00% Castro::do_advance_ctu() 10 7.188e-05 8.946e-05 0.0001084 0.00% Castro::enforce_consistent_e() 1 8.216e-05 8.725e-05 9.881e-05 0.00% Amr::FinalizeInit() 1 3.528e-06 1.565e-05 9.202e-05 0.00% Castro::Castro() 1 6.165e-05 7.189e-05 8.248e-05 0.00% Castro::construct_old_source() 50 4.926e-05 6.549e-05 8.113e-05 0.00% FabArray::ParallelCopy() 41 6.448e-05 7.254e-05 7.982e-05 0.00% FillPatchSingleLevel 41 6.576e-05 7.182e-05 7.685e-05 0.00% FabArrayBase::getCPC() 41 4.73e-05 5.874e-05 7.424e-05 0.00% Castro::do_new_sources() 10 4.782e-05 6.191e-05 7.059e-05 0.00% Castro::apply_source_to_state() 20 4.048e-05 4.988e-05 6.571e-05 0.00% Amr::writeSmallPlotFile() 1 2.808e-05 4.416e-05 6.459e-05 0.00% Amr::defBaseLevel() 1 3.04e-05 4.38e-05 6.337e-05 0.00% Castro::subcycle_advance_ctu() 10 3.644e-05 4.675e-05 5.526e-05 0.00% Castro::construct_new_gravity() 10 3.341e-05 4.042e-05 5.224e-05 0.00% Castro::construct_old_gravity() 10 3.499e-05 4.013e-05 4.401e-05 0.00% Castro::advance() 10 3.572e-05 3.963e-05 4.183e-05 0.00% Castro::enforce_speed_limit() 62 2.504e-05 2.91e-05 3.877e-05 0.00% FabArrayBase::CPC::define() 2 2.128e-05 2.471e-05 2.928e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.323e-05 1.65e-05 2.47e-05 0.00% Castro::check_for_nan() 20 1.79e-05 2.09e-05 2.306e-05 0.00% Gravity::swapTimeLevels() 10 1.197e-05 1.378e-05 1.681e-05 0.00% Castro::post_timestep() 10 1.295e-05 1.432e-05 1.565e-05 0.00% Gravity::set_mass_offset() 10 9.058e-06 1.058e-05 1.217e-05 0.00% Castro::FluxRegCrseInit 10 8.233e-06 9.208e-06 1.143e-05 0.00% Castro::computeNewDt() 9 8.447e-06 9.733e-06 1.116e-05 0.00% Amr::initSubcycle() 1 9.007e-06 9.955e-06 1.085e-05 0.00% Castro::create_source_corrector() 10 7.656e-06 9.496e-06 1.08e-05 0.00% Castro::retry_advance_ctu() 10 6.401e-06 7.513e-06 8.075e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.778e-06 4.834e-06 6.831e-06 0.00% Castro::post_regrid() 1 1.808e-06 3.239e-06 5.991e-06 0.00% Amr::InitializeInit() 1 2.236e-06 2.795e-06 5.243e-06 0.00% Castro::computeInitialDt() 2 3.02e-06 4.14e-06 5.19e-06 0.00% DistributionMapping::Distribute() 1 9.43e-07 1.547e-06 4.732e-06 0.00% Castro::post_init() 1 2.625e-06 3.449e-06 4.367e-06 0.00% Amr::init() 1 1.885e-06 2.27e-06 2.592e-06 0.00% Castro::FluxRegFineAdd() 10 1.946e-06 2.176e-06 2.506e-06 0.00% Amr::initialInit() 1 1.56e-06 1.877e-06 2.323e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.622 3.623 3.623 100.00% Amr::coarseTimeStep() 10 3.421 3.421 3.421 94.42% Amr::timeStep() 10 3.408 3.409 3.41 94.11% Castro::advance() 10 3.392 3.393 3.394 93.66% Castro::subcycle_advance_ctu() 10 3.305 3.312 3.318 91.59% Castro::do_advance_ctu() 10 3.305 3.312 3.318 91.59% Castro::construct_ctu_hydro_source() 10 2.504 2.508 2.513 69.36% Gravity::make_radial_gravity() 21 0.3546 0.3651 0.3753 10.36% Gravity::get_new_grav_vector() 11 0.2267 0.2317 0.2342 6.46% Castro::construct_old_gravity() 10 0.2124 0.2196 0.2269 6.26% Gravity::get_old_grav_vector() 10 0.2116 0.2188 0.2263 6.24% Castro::construct_new_gravity() 10 0.1999 0.2038 0.2057 5.68% Castro::initialize_do_advance() 10 0.1659 0.1814 0.195 5.38% FillPatchIterator::Initialize 41 0.1645 0.1825 0.1932 5.33% Amr::init() 1 0.1845 0.1848 0.1849 5.10% Amr::initialInit() 1 0.1678 0.1683 0.1687 4.66% check_for_negative_density() 10 0.02388 0.1077 0.1563 4.31% FillPatchSingleLevel 41 0.1192 0.1356 0.1459 4.03% Castro::expand_state() 10 0.1068 0.124 0.1366 3.77% Amr::InitializeInit() 1 0.06187 0.1017 0.1365 3.77% Amr::defBaseLevel() 1 0.06186 0.1017 0.1365 3.77% Castro::clean_state() 62 0.1159 0.1189 0.1224 3.38% Castro::initData() 1 0.04363 0.08283 0.117 3.23% Castro::estTimeStep() 21 0.02417 0.06721 0.1131 3.12% FabArray::ParallelCopy() 41 0.08364 0.09879 0.1116 3.08% Amr::FinalizeInit() 1 0.03137 0.06661 0.1066 2.94% Castro::do_old_sources() 10 0.09428 0.09872 0.101 2.79% FabArray::setVal() 143 0.06597 0.07346 0.08567 2.36% Castro::initialize_advance() 10 0.0708 0.07692 0.08384 2.31% amrex::Copy() 193 0.06539 0.07476 0.083 2.29% Castro::do_new_sources() 10 0.06008 0.06691 0.07764 2.14% Castro::computeInitialDt() 2 0.00216 0.03723 0.07716 2.13% FabArray::ParallelCopy_finish() 41 0.04206 0.05708 0.07447 2.06% Castro::computeTemp() 63 0.06877 0.07108 0.07271 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04875 0.05112 0.05212 1.44% Castro::reset_internal_energy(Fab) 1008 0.04846 0.05082 0.05183 1.43% Castro::normalize_species() 62 0.04176 0.04254 0.04462 1.23% FabArray::ParallelCopy_nowait() 41 0.03704 0.04163 0.04363 1.20% StateDataPhysBCFunct::() 41 0.03268 0.03669 0.04291 1.18% StateData::FillBoundary(geom) 41 0.03259 0.03659 0.04276 1.18% Castro::construct_new_source() 50 0.02876 0.0315 0.03599 0.99% Castro::finalize_do_advance() 10 0.01261 0.02298 0.02974 0.82% Castro::construct_new_gravity_source() 10 0.02259 0.02528 0.02969 0.82% Gravity::interpolate_monopole_grav() 21 0.02869 0.02898 0.02941 0.81% Castro::post_init() 1 0.0286 0.02894 0.02924 0.81% Amr::writePlotFile() 2 0.02683 0.02715 0.02749 0.76% VisMF::Write(FabArray) 2 0.01336 0.01412 0.01719 0.47% Castro::post_timestep() 10 0.01559 0.01583 0.01602 0.44% Castro::apply_source_to_state() 20 0.01401 0.01441 0.01474 0.41% FabArray::Saxpy() 20 0.01397 0.01436 0.01469 0.41% FabArray::setDomainBndry() 41 0.009013 0.01172 0.01325 0.37% Castro::check_for_nan() 20 0.01145 0.01219 0.01316 0.36% MultiFab::contains_nan() 20 0.01143 0.01217 0.01314 0.36% Castro::Castro() 1 0.01113 0.01203 0.01295 0.36% Castro::construct_old_source() 50 0.00734 0.01049 0.01124 0.31% Castro::construct_old_gravity_source() 10 0.00729 0.01043 0.01117 0.31% Castro::computeNewDt() 9 0.008542 0.008554 0.00856 0.24% Castro::initMFs() 1 0.007324 0.007846 0.008342 0.23% AmrLevel::AmrLevel(dm) 1 0.006056 0.006493 0.006768 0.19% StateData::define() 4 0.006039 0.006476 0.006749 0.19% Castro::enforce_min_density() 62 0.005831 0.006099 0.006565 0.18% Castro::swap_state_time_levels() 10 0.003599 0.005094 0.006407 0.18% Castro::finalize_advance() 10 0.002996 0.003527 0.004487 0.12% Castro::buildMetrics() 1 0.001854 0.001982 0.002112 0.06% Castro::post_regrid() 1 0.001522 0.001635 0.001953 0.05% Amr::InitAmr() 1 0.000278 0.000345 0.0004431 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.456e-05 0.0002922 0.0003878 0.01% DistributionMapping::LeastUsedCPUs() 1 9.153e-06 0.0002858 0.0003796 0.01% FabArrayBase::getCPC() 41 6.858e-05 8.345e-05 0.0001026 0.00% Castro::enforce_consistent_e() 1 8.216e-05 8.725e-05 9.881e-05 0.00% Amr::writeSmallPlotFile() 1 2.808e-05 4.416e-05 6.459e-05 0.00% Castro::enforce_speed_limit() 62 2.504e-05 2.91e-05 3.877e-05 0.00% FabArrayBase::CPC::define() 2 2.128e-05 2.471e-05 2.928e-05 0.00% Gravity::swapTimeLevels() 10 1.197e-05 1.378e-05 1.681e-05 0.00% Gravity::set_mass_offset() 10 9.058e-06 1.058e-05 1.217e-05 0.00% Castro::FluxRegCrseInit 10 8.233e-06 9.208e-06 1.143e-05 0.00% Amr::initSubcycle() 1 9.007e-06 9.955e-06 1.085e-05 0.00% Castro::create_source_corrector() 10 7.656e-06 9.496e-06 1.08e-05 0.00% Castro::retry_advance_ctu() 10 6.401e-06 7.513e-06 8.075e-06 0.00% DistributionMapping::Distribute() 1 9.43e-07 1.547e-06 4.732e-06 0.00% Castro::FluxRegFineAdd() 10 1.946e-06 2.176e-06 2.506e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 34 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-22-g6303e0abfae9) finalized