MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-22-g6303e0abfae9) initialized Starting run at 05:23:58 UTC on 2023-06-15. Successfully read inputs file ... Castro git describe: 23.06-19-g8e21e216c AMReX git describe: 23.06-22-g6303e0abf Microphysics git describe: 23.06-14-ga0d8db09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016357023 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368363297 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353457273 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335173829 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336505842 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367353431 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339560895 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31691878 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318525452 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313764876 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316504129 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010287976 seconds Ending run at 05:24:02 UTC on 2023-06-15. Run time = 3.601566099 Run time without initialization = 3.383907332 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.6 ... 3.601 ... 3.602 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3489 2.3895 2.4430 67.83% Gravity::make_radial_gravity() 21 0.3181 0.3321 0.3458 9.60% Castro::estTimeStep() 21 0.03378 0.09577 0.1467 4.07% Castro::initData() 1 0.03919 0.08281 0.1461 4.06% check_for_negative_density() 10 0.02044 0.07839 0.1193 3.31% FabArray::setVal() 143 0.06258 0.07038 0.0829 2.30% amrex::Copy() 193 0.06216 0.07284 0.08243 2.29% FabArray::ParallelCopy_finish() 41 0.03523 0.04891 0.07981 2.22% Castro::reset_internal_energy(Fab) 1008 0.0487 0.05064 0.05262 1.46% FabArray::ParallelCopy_nowait() 41 0.03745 0.04144 0.04308 1.20% Castro::normalize_species() 62 0.04087 0.04171 0.04283 1.19% StateData::FillBoundary(geom) 41 0.03266 0.03582 0.03857 1.07% FillPatchIterator::Initialize 41 0.0305 0.03405 0.03633 1.01% Gravity::interpolate_monopole_grav() 21 0.02805 0.02838 0.02903 0.81% Castro::construct_new_gravity_source() 10 0.02265 0.0252 0.02889 0.80% Castro::initialize_do_advance() 10 0.0133 0.01782 0.02108 0.59% Castro::computeTemp() 63 0.01974 0.02021 0.02101 0.58% VisMF::Write(FabArray) 2 0.01373 0.01444 0.01731 0.48% FabArray::Saxpy() 20 0.01257 0.01427 0.01514 0.42% Castro::initialize_advance() 10 0.004164 0.01055 0.01444 0.40% MultiFab::contains_nan() 20 0.01118 0.01195 0.01362 0.38% FabArray::setDomainBndry() 41 0.008759 0.01143 0.01287 0.36% Castro::construct_old_gravity_source() 10 0.007623 0.01022 0.01097 0.30% Amr::writePlotFile() 2 0.006834 0.009802 0.01044 0.29% Castro::initMFs() 1 0.00715 0.007718 0.008274 0.23% main() 1 0.00509 0.006149 0.006777 0.19% StateData::define() 4 0.005834 0.00635 0.006695 0.19% Castro::construct_new_source() 50 0.005808 0.006313 0.006569 0.18% Castro::enforce_min_density() 62 0.006018 0.006237 0.006489 0.18% Gravity::get_new_grav_vector() 11 0.003112 0.003897 0.005902 0.16% Castro::swap_state_time_levels() 10 0.003406 0.004601 0.004864 0.14% Gravity::get_old_grav_vector() 10 0.001829 0.002402 0.002909 0.08% Amr::coarseTimeStep() 10 0.001523 0.001954 0.002507 0.07% Castro::buildMetrics() 1 0.001727 0.001876 0.00198 0.05% Castro::finalize_do_advance() 10 0.0008274 0.001523 0.001786 0.05% Castro::expand_state() 10 0.0007441 0.0008429 0.0009 0.02% Amr::timeStep() 10 0.0001666 0.000235 0.0004711 0.01% Amr::InitAmr() 1 0.0002657 0.0003105 0.0004055 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002874 0.0002984 0.0003226 0.01% Castro::enforce_consistent_e() 1 7.549e-05 0.0001157 0.0002394 0.01% Castro::clean_state() 62 0.0001432 0.0001528 0.0001631 0.00% Castro::do_old_sources() 10 0.0001208 0.0001434 0.0001623 0.00% DistributionMapping::LeastUsedCPUs() 1 8.155e-06 0.0001095 0.0001537 0.00% Castro::finalize_advance() 10 9.366e-05 0.0001085 0.0001301 0.00% StateDataPhysBCFunct::() 41 8.542e-05 0.0001054 0.000128 0.00% Castro::do_advance_ctu() 10 7.161e-05 8.374e-05 9.403e-05 0.00% FabArray::ParallelCopy() 41 6.87e-05 7.758e-05 8.794e-05 0.00% Amr::FinalizeInit() 1 4.235e-06 1.501e-05 8.278e-05 0.00% Castro::Castro() 1 6.502e-05 7.048e-05 7.947e-05 0.00% FillPatchSingleLevel 41 6.557e-05 7.181e-05 7.782e-05 0.00% FabArrayBase::getCPC() 41 4.212e-05 6.062e-05 7.658e-05 0.00% Castro::construct_old_source() 50 4.798e-05 6.566e-05 7.39e-05 0.00% Castro::do_new_sources() 10 5.421e-05 6.401e-05 7.146e-05 0.00% Amr::writeSmallPlotFile() 1 2.648e-05 5.512e-05 7.007e-05 0.00% Castro::subcycle_advance_ctu() 10 3.4e-05 4.742e-05 6.342e-05 0.00% Castro::apply_source_to_state() 20 4.275e-05 4.701e-05 5.103e-05 0.00% Castro::construct_new_gravity() 10 3.376e-05 3.875e-05 5.039e-05 0.00% Castro::advance() 10 3.786e-05 4.162e-05 4.82e-05 0.00% Castro::construct_old_gravity() 10 3.479e-05 3.824e-05 4.611e-05 0.00% Amr::defBaseLevel() 1 2.401e-05 3.25e-05 4.35e-05 0.00% FabArrayBase::CPC::define() 2 1.991e-05 2.353e-05 2.929e-05 0.00% Castro::enforce_speed_limit() 62 2.238e-05 2.468e-05 2.706e-05 0.00% Gravity::swapTimeLevels() 10 1.083e-05 1.533e-05 2.504e-05 0.00% Castro::check_for_nan() 20 1.931e-05 2.147e-05 2.367e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.357e-05 1.7e-05 2.196e-05 0.00% Castro::post_timestep() 10 1.259e-05 1.488e-05 1.729e-05 0.00% Gravity::set_mass_offset() 10 1.014e-05 1.122e-05 1.321e-05 0.00% Castro::computeNewDt() 9 8.436e-06 1.025e-05 1.179e-05 0.00% Castro::FluxRegCrseInit 10 8.385e-06 9.459e-06 1.067e-05 0.00% Amr::initSubcycle() 1 8.964e-06 9.802e-06 1.038e-05 0.00% Castro::create_source_corrector() 10 6.724e-06 8.877e-06 1.026e-05 0.00% Amr::init() 1 1.93e-06 3.314e-06 9.566e-06 0.00% Castro::retry_advance_ctu() 10 6.325e-06 7.215e-06 8.469e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.221e-06 5.152e-06 7.025e-06 0.00% Castro::computeInitialDt() 2 4.095e-06 4.684e-06 5.701e-06 0.00% Amr::InitializeInit() 1 2.126e-06 2.643e-06 5.301e-06 0.00% Castro::post_init() 1 2.849e-06 3.699e-06 4.403e-06 0.00% Castro::post_regrid() 1 1.863e-06 3.339e-06 4.219e-06 0.00% Castro::FluxRegFineAdd() 10 1.915e-06 2.298e-06 2.838e-06 0.00% Amr::initialInit() 1 1.582e-06 2.045e-06 2.291e-06 0.00% DistributionMapping::Distribute() 1 9.61e-07 1.139e-06 1.679e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.6 3.601 3.602 100.00% Amr::coarseTimeStep() 10 3.367 3.367 3.367 93.48% Amr::timeStep() 10 3.355 3.355 3.356 93.18% Castro::advance() 10 3.339 3.339 3.34 92.73% Castro::subcycle_advance_ctu() 10 3.256 3.263 3.274 90.91% Castro::do_advance_ctu() 10 3.256 3.263 3.274 90.90% Castro::construct_ctu_hydro_source() 10 2.487 2.49 2.496 69.31% Gravity::make_radial_gravity() 21 0.3344 0.3489 0.3595 9.98% Gravity::get_new_grav_vector() 11 0.2267 0.2314 0.2331 6.47% Amr::init() 1 0.2171 0.2172 0.2172 6.03% Castro::construct_old_gravity() 10 0.1921 0.201 0.2096 5.82% Gravity::get_old_grav_vector() 10 0.1912 0.2003 0.2089 5.80% Castro::construct_new_gravity() 10 0.2006 0.2047 0.206 5.72% Amr::initialInit() 1 0.2003 0.2007 0.2009 5.58% FillPatchIterator::Initialize 41 0.1524 0.172 0.1896 5.26% Castro::initialize_do_advance() 10 0.1612 0.1743 0.1809 5.02% Amr::InitializeInit() 1 0.06099 0.1054 0.17 4.72% Amr::defBaseLevel() 1 0.06098 0.1054 0.17 4.72% Castro::initData() 1 0.04277 0.08716 0.1507 4.18% FillPatchSingleLevel 41 0.1116 0.1265 0.1503 4.17% Castro::estTimeStep() 21 0.03378 0.09577 0.1467 4.07% Amr::FinalizeInit() 1 0.03031 0.09522 0.1396 3.88% Castro::expand_state() 10 0.103 0.1186 0.1263 3.51% Castro::clean_state() 62 0.1153 0.1182 0.1222 3.39% check_for_negative_density() 10 0.02044 0.07839 0.1193 3.31% FabArray::ParallelCopy() 41 0.07746 0.09052 0.1175 3.26% Castro::computeInitialDt() 2 0.00232 0.06698 0.1113 3.09% Castro::do_old_sources() 10 0.09066 0.09355 0.09691 2.69% FabArray::setVal() 143 0.06258 0.07038 0.0829 2.30% amrex::Copy() 193 0.06216 0.07284 0.08243 2.29% Castro::initialize_advance() 10 0.0608 0.07207 0.07986 2.22% FabArray::ParallelCopy_finish() 41 0.03523 0.04891 0.07981 2.22% Castro::do_new_sources() 10 0.06023 0.06694 0.07719 2.14% Castro::computeTemp() 63 0.06885 0.07115 0.07396 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04899 0.05094 0.05295 1.47% Castro::reset_internal_energy(Fab) 1008 0.0487 0.05064 0.05262 1.46% FabArray::ParallelCopy_nowait() 41 0.03756 0.04153 0.04317 1.20% Castro::normalize_species() 62 0.04087 0.04171 0.04283 1.19% StateDataPhysBCFunct::() 41 0.03277 0.03592 0.03868 1.07% StateData::FillBoundary(geom) 41 0.03266 0.03582 0.03857 1.07% Castro::construct_new_source() 50 0.02885 0.03151 0.03546 0.98% Gravity::interpolate_monopole_grav() 21 0.02805 0.02838 0.02903 0.81% Castro::construct_new_gravity_source() 10 0.02265 0.0252 0.02889 0.80% Castro::finalize_do_advance() 10 0.01187 0.02192 0.02875 0.80% Castro::post_init() 1 0.02734 0.02774 0.02801 0.78% Amr::writePlotFile() 2 0.02673 0.02689 0.02714 0.75% VisMF::Write(FabArray) 2 0.01373 0.01444 0.01731 0.48% Castro::post_timestep() 10 0.01577 0.01603 0.01629 0.45% Castro::apply_source_to_state() 20 0.01261 0.01432 0.01519 0.42% FabArray::Saxpy() 20 0.01257 0.01427 0.01514 0.42% Castro::check_for_nan() 20 0.0112 0.01197 0.01365 0.38% MultiFab::contains_nan() 20 0.01118 0.01195 0.01362 0.38% FabArray::setDomainBndry() 41 0.008759 0.01143 0.01287 0.36% Castro::Castro() 1 0.01072 0.01176 0.01256 0.35% Castro::construct_old_source() 50 0.007671 0.01029 0.01102 0.31% Castro::construct_old_gravity_source() 10 0.007623 0.01022 0.01097 0.30% Castro::computeNewDt() 9 0.008402 0.008412 0.008419 0.23% Castro::initMFs() 1 0.00715 0.007718 0.008274 0.23% AmrLevel::AmrLevel(dm) 1 0.005853 0.006367 0.006716 0.19% StateData::define() 4 0.005834 0.00635 0.006695 0.19% Castro::enforce_min_density() 62 0.006018 0.006237 0.006489 0.18% Castro::swap_state_time_levels() 10 0.003406 0.004601 0.004864 0.14% Castro::finalize_advance() 10 0.002987 0.003545 0.004066 0.11% Castro::buildMetrics() 1 0.001851 0.002013 0.002124 0.06% Castro::post_regrid() 1 0.001527 0.001637 0.001805 0.05% Amr::InitAmr() 1 0.0002752 0.0003203 0.0004144 0.01% Castro::enforce_consistent_e() 1 7.549e-05 0.0001157 0.0002394 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.503e-05 0.0001158 0.0001618 0.00% DistributionMapping::LeastUsedCPUs() 1 8.155e-06 0.0001095 0.0001537 0.00% FabArrayBase::getCPC() 41 6.547e-05 8.415e-05 0.0001059 0.00% Amr::writeSmallPlotFile() 1 2.648e-05 5.512e-05 7.007e-05 0.00% FabArrayBase::CPC::define() 2 1.991e-05 2.353e-05 2.929e-05 0.00% Castro::enforce_speed_limit() 62 2.238e-05 2.468e-05 2.706e-05 0.00% Gravity::swapTimeLevels() 10 1.083e-05 1.533e-05 2.504e-05 0.00% Gravity::set_mass_offset() 10 1.014e-05 1.122e-05 1.321e-05 0.00% Castro::FluxRegCrseInit 10 8.385e-06 9.459e-06 1.067e-05 0.00% Amr::initSubcycle() 1 8.964e-06 9.802e-06 1.038e-05 0.00% Castro::create_source_corrector() 10 6.724e-06 8.877e-06 1.026e-05 0.00% Castro::retry_advance_ctu() 10 6.325e-06 7.215e-06 8.469e-06 0.00% Castro::FluxRegFineAdd() 10 1.915e-06 2.298e-06 2.838e-06 0.00% DistributionMapping::Distribute() 1 9.61e-07 1.139e-06 1.679e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 40 B 81 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-22-g6303e0abfae9) finalized