MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-24-gd28b9ab1cd64) initialized Starting run at 01:58:23 UTC on 2023-06-17. Successfully read inputs file ... Castro git describe: 23.06-22-gfff48b650 AMReX git describe: 23.06-24-gd28b9ab1c Microphysics git describe: 23.06-15-g48f54771 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015567522 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360505027 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34673735 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332562308 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334158959 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.333835376 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.381237325 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316182057 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315226689 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.318920559 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315769304 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010575551 seconds Ending run at 01:58:26 UTC on 2023-06-17. Run time = 3.558398244 Run time without initialization = 3.372519521 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.557 ... 3.558 ... 3.558 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2936 2.3586 2.4200 68.01% Gravity::make_radial_gravity() 21 0.3179 0.3292 0.3406 9.57% check_for_negative_density() 10 0.01291 0.07692 0.1435 4.03% Castro::initData() 1 0.03814 0.07834 0.118 3.32% Castro::estTimeStep() 21 0.02452 0.07106 0.1169 3.29% FabArray::ParallelCopy_finish() 41 0.03328 0.06577 0.1001 2.81% FabArray::setVal() 143 0.06459 0.07582 0.09167 2.58% amrex::Copy() 193 0.06544 0.07448 0.08349 2.35% Castro::reset_internal_energy(Fab) 1008 0.04808 0.05045 0.05521 1.55% Castro::normalize_species() 62 0.04032 0.04192 0.04411 1.24% FabArray::ParallelCopy_nowait() 41 0.03501 0.04074 0.04211 1.18% FillPatchIterator::Initialize 41 0.0285 0.03428 0.04076 1.15% StateData::FillBoundary(geom) 41 0.03287 0.03487 0.03679 1.03% Gravity::interpolate_monopole_grav() 21 0.02835 0.02872 0.02902 0.82% Castro::construct_new_gravity_source() 10 0.02188 0.02429 0.02656 0.75% Castro::initialize_do_advance() 10 0.01178 0.01874 0.02435 0.68% Castro::computeTemp() 63 0.0178 0.0195 0.02158 0.61% VisMF::Write(FabArray) 2 0.01341 0.01418 0.01679 0.47% FabArray::Saxpy() 20 0.01229 0.0143 0.01563 0.44% Castro::initialize_advance() 10 0.008836 0.01161 0.01506 0.42% MultiFab::contains_nan() 20 0.01101 0.01187 0.01295 0.36% FabArray::setDomainBndry() 41 0.008743 0.01116 0.01255 0.35% Amr::writePlotFile() 2 0.006801 0.009625 0.01122 0.32% Castro::construct_old_gravity_source() 10 0.007297 0.01026 0.01102 0.31% Castro::initMFs() 1 0.006998 0.007648 0.008295 0.23% Castro::construct_new_source() 50 0.005865 0.006503 0.00694 0.20% StateData::define() 4 0.005772 0.006203 0.006666 0.19% Castro::enforce_min_density() 62 0.005728 0.006085 0.006641 0.19% main() 1 0.004847 0.005603 0.006098 0.17% Castro::swap_state_time_levels() 10 0.003378 0.00446 0.004829 0.14% Gravity::get_new_grav_vector() 11 0.002998 0.003623 0.00404 0.11% Gravity::get_old_grav_vector() 10 0.001848 0.002381 0.002868 0.08% Amr::coarseTimeStep() 10 0.0008354 0.001778 0.002727 0.08% Castro::buildMetrics() 1 0.001629 0.001768 0.001907 0.05% Castro::finalize_do_advance() 10 0.0006003 0.001535 0.001887 0.05% Castro::expand_state() 10 0.0006498 0.0009198 0.001063 0.03% Amr::timeStep() 10 0.0002328 0.0002879 0.0004308 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002798 0.0003087 0.0004168 0.01% Amr::InitAmr() 1 0.0002722 0.0003019 0.0004148 0.01% Castro::clean_state() 62 0.0001265 0.0001544 0.0001971 0.01% Castro::do_old_sources() 10 0.0001246 0.000145 0.0001651 0.00% DistributionMapping::LeastUsedCPUs() 1 7.702e-06 0.0001317 0.0001637 0.00% StateDataPhysBCFunct::() 41 8.425e-05 0.0001059 0.0001314 0.00% Castro::finalize_advance() 10 7.89e-05 9.634e-05 0.0001233 0.00% Castro::do_advance_ctu() 10 7.895e-05 9.681e-05 0.0001211 0.00% Castro::enforce_consistent_e() 1 7.41e-05 8.662e-05 9.711e-05 0.00% FabArray::ParallelCopy() 41 6.065e-05 7.454e-05 8.915e-05 0.00% Castro::construct_old_source() 50 4.816e-05 6.454e-05 8.362e-05 0.00% FillPatchSingleLevel 41 6.288e-05 7.116e-05 7.951e-05 0.00% FabArrayBase::getCPC() 41 4.044e-05 5.44e-05 7.624e-05 0.00% Amr::FinalizeInit() 1 3.56e-06 1.331e-05 7.519e-05 0.00% Castro::Castro() 1 5.573e-05 6.418e-05 7.285e-05 0.00% Castro::subcycle_advance_ctu() 10 3.869e-05 5.369e-05 7.153e-05 0.00% Castro::computeNewDt() 9 8.395e-06 2.891e-05 6.941e-05 0.00% Castro::do_new_sources() 10 4.804e-05 6.224e-05 6.831e-05 0.00% Amr::writeSmallPlotFile() 1 3.383e-05 5.591e-05 6.776e-05 0.00% Castro::advance() 10 3.254e-05 4.741e-05 5.915e-05 0.00% Castro::apply_source_to_state() 20 3.133e-05 4.874e-05 5.868e-05 0.00% Castro::construct_old_gravity() 10 3.472e-05 4.275e-05 4.775e-05 0.00% Amr::defBaseLevel() 1 2.538e-05 3.946e-05 4.733e-05 0.00% Castro::construct_new_gravity() 10 3.167e-05 4.033e-05 4.615e-05 0.00% Castro::enforce_speed_limit() 62 2.476e-05 3.028e-05 3.706e-05 0.00% FabArrayBase::CPC::define() 2 1.936e-05 2.389e-05 3.161e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.373e-05 1.848e-05 2.687e-05 0.00% Castro::check_for_nan() 20 1.872e-05 2.06e-05 2.359e-05 0.00% Gravity::swapTimeLevels() 10 1.206e-05 1.472e-05 2.015e-05 0.00% Castro::post_timestep() 10 1.193e-05 1.485e-05 1.715e-05 0.00% Castro::create_source_corrector() 10 7.724e-06 9.831e-06 1.679e-05 0.00% Gravity::set_mass_offset() 10 8.988e-06 1.245e-05 1.487e-05 0.00% Castro::FluxRegCrseInit 10 8.122e-06 9.197e-06 1.05e-05 0.00% Amr::initSubcycle() 1 8.867e-06 9.799e-06 1.039e-05 0.00% Castro::retry_advance_ctu() 10 6.983e-06 7.836e-06 8.915e-06 0.00% Castro::post_regrid() 1 1.712e-06 3.742e-06 8.782e-06 0.00% Amr::init() 1 1.643e-06 2.9e-06 7.487e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.735e-06 4.598e-06 6.891e-06 0.00% Amr::InitializeInit() 1 2.323e-06 2.883e-06 5.636e-06 0.00% Castro::computeInitialDt() 2 3.227e-06 4.225e-06 5.555e-06 0.00% Castro::post_init() 1 2.794e-06 3.228e-06 3.854e-06 0.00% Castro::FluxRegFineAdd() 10 1.762e-06 2.122e-06 2.897e-06 0.00% Amr::initialInit() 1 1.436e-06 1.84e-06 2.193e-06 0.00% DistributionMapping::Distribute() 1 9.77e-07 1.066e-06 1.17e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.557 3.558 3.558 100.00% Amr::coarseTimeStep() 10 3.356 3.356 3.356 94.31% Amr::timeStep() 10 3.34 3.341 3.342 93.91% Castro::advance() 10 3.324 3.325 3.325 93.45% Castro::subcycle_advance_ctu() 10 3.225 3.241 3.251 91.37% Castro::do_advance_ctu() 10 3.225 3.241 3.251 91.37% Castro::construct_ctu_hydro_source() 10 2.455 2.457 2.459 69.11% Gravity::make_radial_gravity() 21 0.3346 0.3468 0.3556 9.99% Gravity::get_new_grav_vector() 11 0.225 0.2259 0.2265 6.37% Castro::construct_old_gravity() 10 0.1969 0.2058 0.2125 5.97% Gravity::get_old_grav_vector() 10 0.1957 0.2049 0.2119 5.95% FillPatchIterator::Initialize 41 0.1612 0.1872 0.2055 5.78% Castro::construct_new_gravity() 10 0.2006 0.2009 0.2016 5.66% Castro::initialize_do_advance() 10 0.171 0.1871 0.2 5.62% Amr::init() 1 0.1853 0.1854 0.1855 5.21% Amr::initialInit() 1 0.1693 0.1696 0.1698 4.77% FillPatchSingleLevel 41 0.1095 0.1417 0.1683 4.73% Castro::expand_state() 10 0.1094 0.1309 0.1457 4.09% check_for_negative_density() 10 0.01291 0.07692 0.1435 4.03% Amr::InitializeInit() 1 0.05875 0.1001 0.1411 3.96% Amr::defBaseLevel() 1 0.05875 0.1001 0.141 3.96% FabArray::ParallelCopy() 41 0.07511 0.1067 0.1352 3.80% Castro::clean_state() 62 0.1127 0.1175 0.1266 3.56% Castro::initData() 1 0.04201 0.08221 0.122 3.43% Castro::estTimeStep() 21 0.02452 0.07106 0.1169 3.29% Amr::FinalizeInit() 1 0.0285 0.0695 0.1109 3.12% FabArray::ParallelCopy_finish() 41 0.03328 0.06577 0.1001 2.81% Castro::do_old_sources() 10 0.09504 0.09742 0.09933 2.79% Castro::initialize_advance() 10 0.07021 0.08003 0.09668 2.72% FabArray::setVal() 143 0.06459 0.07582 0.09167 2.58% Castro::computeInitialDt() 2 0.00206 0.04303 0.08439 2.37% amrex::Copy() 193 0.06544 0.07448 0.08349 2.35% Castro::computeTemp() 63 0.06652 0.07026 0.0771 2.17% Castro::do_new_sources() 10 0.06105 0.06459 0.07017 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04839 0.05076 0.05553 1.56% Castro::reset_internal_energy(Fab) 1008 0.04808 0.05045 0.05521 1.55% Castro::normalize_species() 62 0.04032 0.04192 0.04411 1.24% FabArray::ParallelCopy_nowait() 41 0.0351 0.04082 0.04218 1.19% StateDataPhysBCFunct::() 41 0.03297 0.03498 0.03689 1.04% StateData::FillBoundary(geom) 41 0.03287 0.03487 0.03679 1.03% Castro::construct_new_source() 50 0.02774 0.0308 0.0335 0.94% Gravity::interpolate_monopole_grav() 21 0.02835 0.02872 0.02902 0.82% Amr::writePlotFile() 2 0.02634 0.02651 0.02679 0.75% Castro::construct_new_gravity_source() 10 0.02188 0.02429 0.02656 0.75% Castro::post_init() 1 0.0256 0.02592 0.02612 0.73% Castro::finalize_do_advance() 10 0.01122 0.01723 0.02144 0.60% VisMF::Write(FabArray) 2 0.01341 0.01418 0.01679 0.47% Castro::post_timestep() 10 0.01538 0.01572 0.01617 0.45% Castro::apply_source_to_state() 20 0.01234 0.01434 0.01569 0.44% FabArray::Saxpy() 20 0.01229 0.0143 0.01563 0.44% Castro::computeNewDt() 9 0.01209 0.01238 0.01306 0.37% Castro::check_for_nan() 20 0.01103 0.01189 0.01297 0.36% MultiFab::contains_nan() 20 0.01101 0.01187 0.01295 0.36% FabArray::setDomainBndry() 41 0.008743 0.01116 0.01255 0.35% Castro::Castro() 1 0.01069 0.01147 0.01225 0.34% Castro::construct_old_source() 50 0.007347 0.01033 0.0111 0.31% Castro::construct_old_gravity_source() 10 0.007297 0.01026 0.01102 0.31% Castro::initMFs() 1 0.006998 0.007648 0.008295 0.23% AmrLevel::AmrLevel(dm) 1 0.005788 0.006221 0.006684 0.19% StateData::define() 4 0.005772 0.006203 0.006666 0.19% Castro::enforce_min_density() 62 0.005728 0.006085 0.006641 0.19% Castro::swap_state_time_levels() 10 0.003378 0.00446 0.004829 0.14% Castro::finalize_advance() 10 0.003066 0.003332 0.003593 0.10% Castro::buildMetrics() 1 0.001737 0.001896 0.002041 0.06% Castro::post_regrid() 1 0.001558 0.00162 0.001673 0.05% Amr::InitAmr() 1 0.0002819 0.0003117 0.0004241 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.25e-05 0.0001374 0.0001717 0.00% DistributionMapping::LeastUsedCPUs() 1 7.702e-06 0.0001317 0.0001637 0.00% FabArrayBase::getCPC() 41 6.981e-05 7.83e-05 9.779e-05 0.00% Castro::enforce_consistent_e() 1 7.41e-05 8.662e-05 9.711e-05 0.00% Amr::writeSmallPlotFile() 1 3.383e-05 5.591e-05 6.776e-05 0.00% Castro::enforce_speed_limit() 62 2.476e-05 3.028e-05 3.706e-05 0.00% FabArrayBase::CPC::define() 2 1.936e-05 2.389e-05 3.161e-05 0.00% Gravity::swapTimeLevels() 10 1.206e-05 1.472e-05 2.015e-05 0.00% Castro::create_source_corrector() 10 7.724e-06 9.831e-06 1.679e-05 0.00% Gravity::set_mass_offset() 10 8.988e-06 1.245e-05 1.487e-05 0.00% Castro::FluxRegCrseInit 10 8.122e-06 9.197e-06 1.05e-05 0.00% Amr::initSubcycle() 1 8.867e-06 9.799e-06 1.039e-05 0.00% Castro::retry_advance_ctu() 10 6.983e-06 7.836e-06 8.915e-06 0.00% Castro::FluxRegFineAdd() 10 1.762e-06 2.122e-06 2.897e-06 0.00% DistributionMapping::Distribute() 1 9.77e-07 1.066e-06 1.17e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-24-gd28b9ab1cd64) finalized