MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-23-g02ac1f39bce4) initialized Starting run at 05:20:42 UTC on 2023-06-16. Successfully read inputs file ... Castro git describe: 23.06-20-g6a7d6484b AMReX git describe: 23.06-23-g02ac1f39b Microphysics git describe: 23.06-14-ga0d8db09 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016214947 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360796729 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.355100802 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331945523 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330366841 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.337066036 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.373942064 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315179327 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315400994 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315257566 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314545994 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010464134 seconds Ending run at 05:20:46 UTC on 2023-06-16. Run time = 3.548298718 Run time without initialization = 3.367020814 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.548 ... 3.548 ... 3.548 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2774 2.3603 2.4056 67.80% Gravity::make_radial_gravity() 21 0.32 0.3296 0.3413 9.62% check_for_negative_density() 10 0.01971 0.06455 0.1499 4.22% Castro::initData() 1 0.03832 0.07673 0.113 3.19% Castro::estTimeStep() 21 0.02543 0.06761 0.1099 3.10% FabArray::setVal() 143 0.06422 0.07862 0.09666 2.72% amrex::Copy() 193 0.06568 0.07384 0.08284 2.33% FabArray::ParallelCopy_finish() 41 0.0347 0.06296 0.08142 2.29% Castro::reset_internal_energy(Fab) 1008 0.04782 0.05043 0.05326 1.50% Castro::normalize_species() 62 0.04069 0.0422 0.04359 1.23% FabArray::ParallelCopy_nowait() 41 0.03513 0.04064 0.0427 1.20% FillPatchIterator::Initialize 41 0.0286 0.03416 0.04149 1.17% StateData::FillBoundary(geom) 41 0.0325 0.03572 0.03903 1.10% Gravity::interpolate_monopole_grav() 21 0.02769 0.02819 0.02857 0.81% Castro::construct_new_gravity_source() 10 0.02166 0.02414 0.02581 0.73% Castro::initialize_do_advance() 10 0.01218 0.01924 0.02521 0.71% Castro::computeTemp() 63 0.01941 0.02037 0.02235 0.63% VisMF::Write(FabArray) 2 0.0135 0.01435 0.01692 0.48% Castro::initialize_advance() 10 0.009966 0.01242 0.01588 0.45% FabArray::Saxpy() 20 0.01229 0.01391 0.01478 0.42% MultiFab::contains_nan() 20 0.01089 0.01216 0.01302 0.37% FabArray::setDomainBndry() 41 0.008676 0.01128 0.01257 0.35% Castro::construct_old_gravity_source() 10 0.007128 0.01014 0.01104 0.31% Amr::writePlotFile() 2 0.007153 0.009659 0.01102 0.31% Castro::initMFs() 1 0.00702 0.007352 0.009016 0.25% Amr::coarseTimeStep() 10 0.002051 0.005616 0.007774 0.22% Castro::construct_new_source() 50 0.005797 0.006373 0.006738 0.19% Castro::enforce_min_density() 62 0.005765 0.0063 0.006738 0.19% StateData::define() 4 0.005763 0.00596 0.006601 0.19% main() 1 0.005363 0.005847 0.006138 0.17% Castro::swap_state_time_levels() 10 0.003427 0.004509 0.004901 0.14% Gravity::get_new_grav_vector() 11 0.002999 0.003647 0.004066 0.11% Gravity::get_old_grav_vector() 10 0.001748 0.002352 0.002839 0.08% Castro::finalize_do_advance() 10 0.0005826 0.001678 0.002166 0.06% Castro::buildMetrics() 1 0.001615 0.001671 0.001915 0.05% Castro::expand_state() 10 0.0006095 0.0008558 0.001043 0.03% Amr::timeStep() 10 0.0001873 0.0002658 0.0005808 0.02% Amr::InitAmr() 1 0.0002691 0.0003012 0.000414 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002699 0.0003039 0.0003392 0.01% Castro::clean_state() 62 0.0001381 0.0001527 0.0001703 0.00% Castro::do_old_sources() 10 0.0001283 0.0001521 0.0001674 0.00% DistributionMapping::LeastUsedCPUs() 1 6.241e-06 0.0001153 0.0001395 0.00% Castro::do_advance_ctu() 10 7.513e-05 9.404e-05 0.0001292 0.00% Castro::finalize_advance() 10 8.732e-05 0.0001001 0.0001213 0.00% StateDataPhysBCFunct::() 41 8.871e-05 9.788e-05 0.0001203 0.00% Amr::FinalizeInit() 1 4.152e-06 1.786e-05 0.0001087 0.00% Castro::enforce_consistent_e() 1 7.768e-05 8.591e-05 9.864e-05 0.00% Castro::Castro() 1 6.127e-05 8.362e-05 9.615e-05 0.00% FillPatchSingleLevel 41 6.492e-05 7.762e-05 9.412e-05 0.00% Amr::writeSmallPlotFile() 1 2.781e-05 4.99e-05 9.006e-05 0.00% FabArray::ParallelCopy() 41 6.994e-05 7.76e-05 8.757e-05 0.00% Castro::construct_old_source() 50 4.485e-05 6.62e-05 7.614e-05 0.00% Castro::do_new_sources() 10 4.977e-05 6.431e-05 7.416e-05 0.00% Castro::subcycle_advance_ctu() 10 3.994e-05 5.233e-05 7.092e-05 0.00% FabArrayBase::getCPC() 41 4.92e-05 5.687e-05 7.069e-05 0.00% Castro::apply_source_to_state() 20 4.608e-05 4.995e-05 5.615e-05 0.00% Amr::defBaseLevel() 1 2.751e-05 4.152e-05 5.342e-05 0.00% Castro::construct_old_gravity() 10 3.465e-05 4.269e-05 5.095e-05 0.00% Castro::advance() 10 4.086e-05 4.484e-05 5.084e-05 0.00% Castro::construct_new_gravity() 10 3.349e-05 4.108e-05 4.742e-05 0.00% Castro::computeNewDt() 9 8.839e-06 1.913e-05 4.414e-05 0.00% Castro::enforce_speed_limit() 62 2.29e-05 2.582e-05 2.826e-05 0.00% Castro::post_timestep() 10 1.411e-05 1.713e-05 2.789e-05 0.00% FabArrayBase::CPC::define() 2 2.238e-05 2.479e-05 2.757e-05 0.00% Castro::check_for_nan() 20 1.772e-05 2.024e-05 2.244e-05 0.00% Gravity::swapTimeLevels() 10 1.211e-05 1.496e-05 2.218e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.457e-05 1.77e-05 2.088e-05 0.00% Castro::retry_advance_ctu() 10 6.538e-06 8.992e-06 1.81e-05 0.00% Gravity::set_mass_offset() 10 9.356e-06 1.397e-05 1.7e-05 0.00% Castro::FluxRegCrseInit 10 7.011e-06 9.38e-06 1.334e-05 0.00% Castro::create_source_corrector() 10 7.676e-06 9.057e-06 1.073e-05 0.00% Amr::initSubcycle() 1 8.8e-06 9.362e-06 1.05e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.699e-06 5.026e-06 9.961e-06 0.00% Castro::computeInitialDt() 2 3.305e-06 4.081e-06 5.606e-06 0.00% Amr::InitializeInit() 1 1.793e-06 2.59e-06 5.059e-06 0.00% Castro::post_init() 1 2.71e-06 3.832e-06 4.271e-06 0.00% Castro::post_regrid() 1 1.935e-06 3.23e-06 4.249e-06 0.00% Castro::FluxRegFineAdd() 10 2.068e-06 2.362e-06 3.152e-06 0.00% Amr::init() 1 1.859e-06 2.356e-06 2.857e-06 0.00% Amr::initialInit() 1 1.724e-06 2.051e-06 2.48e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.112e-06 1.329e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.548 3.548 3.548 100.00% Amr::coarseTimeStep() 10 3.35 3.351 3.351 94.42% Amr::timeStep() 10 3.33 3.331 3.335 93.98% Castro::advance() 10 3.313 3.314 3.315 93.42% Castro::subcycle_advance_ctu() 10 3.213 3.229 3.243 91.38% Castro::do_advance_ctu() 10 3.213 3.229 3.243 91.38% Castro::construct_ctu_hydro_source() 10 2.443 2.446 2.449 69.01% Gravity::make_radial_gravity() 21 0.3366 0.3468 0.3566 10.05% Gravity::get_new_grav_vector() 11 0.2213 0.2226 0.224 6.31% Castro::construct_old_gravity() 10 0.2015 0.2089 0.2169 6.11% Gravity::get_old_grav_vector() 10 0.2003 0.208 0.2163 6.10% FillPatchIterator::Initialize 41 0.1556 0.1851 0.2044 5.76% Castro::initialize_do_advance() 10 0.1678 0.1856 0.2001 5.64% Castro::construct_new_gravity() 10 0.1961 0.197 0.1977 5.57% Amr::init() 1 0.1807 0.1808 0.1808 5.10% Amr::initialInit() 1 0.1643 0.1646 0.1647 4.64% FillPatchSingleLevel 41 0.1115 0.1397 0.1567 4.42% check_for_negative_density() 10 0.01971 0.06455 0.1499 4.22% Castro::expand_state() 10 0.1064 0.1283 0.1443 4.07% Amr::InitializeInit() 1 0.05981 0.09857 0.1354 3.81% Amr::defBaseLevel() 1 0.0598 0.09857 0.1353 3.81% Castro::clean_state() 62 0.1141 0.1188 0.1241 3.50% FabArray::ParallelCopy() 41 0.07597 0.1038 0.1176 3.31% Castro::initData() 1 0.04236 0.08069 0.1172 3.30% Castro::estTimeStep() 21 0.02543 0.06761 0.1099 3.10% Amr::FinalizeInit() 1 0.02899 0.06598 0.1049 2.96% Castro::do_old_sources() 10 0.09536 0.0974 0.1003 2.83% Castro::initialize_advance() 10 0.06858 0.08232 0.09769 2.75% FabArray::setVal() 143 0.06422 0.07862 0.09666 2.72% amrex::Copy() 193 0.06568 0.07384 0.08284 2.33% FabArray::ParallelCopy_finish() 41 0.0347 0.06296 0.08142 2.29% Castro::computeInitialDt() 2 0.002051 0.03883 0.07762 2.19% Castro::computeTemp() 63 0.06751 0.0711 0.07595 2.14% Castro::do_new_sources() 10 0.06023 0.06418 0.06944 1.96% Castro::reset_internal_energy(MultiFab) 63 0.0481 0.05073 0.0536 1.51% Castro::reset_internal_energy(Fab) 1008 0.04782 0.05043 0.05326 1.50% Castro::normalize_species() 62 0.04069 0.0422 0.04359 1.23% FabArray::ParallelCopy_nowait() 41 0.03521 0.04072 0.04278 1.21% StateDataPhysBCFunct::() 41 0.03262 0.03582 0.03913 1.10% StateData::FillBoundary(geom) 41 0.0325 0.03572 0.03903 1.10% Castro::construct_new_source() 50 0.02745 0.03051 0.03245 0.91% Gravity::interpolate_monopole_grav() 21 0.02769 0.02819 0.02857 0.81% Amr::writePlotFile() 2 0.02665 0.02678 0.02699 0.76% Castro::post_init() 1 0.02634 0.02655 0.0267 0.75% Castro::construct_new_gravity_source() 10 0.02166 0.02414 0.02581 0.73% Castro::finalize_do_advance() 10 0.01222 0.01796 0.02304 0.65% Castro::post_timestep() 10 0.01601 0.01668 0.02022 0.57% VisMF::Write(FabArray) 2 0.0135 0.01435 0.01692 0.48% Castro::apply_source_to_state() 20 0.01234 0.01396 0.01483 0.42% FabArray::Saxpy() 20 0.01229 0.01391 0.01478 0.42% Castro::check_for_nan() 20 0.01091 0.01218 0.01305 0.37% MultiFab::contains_nan() 20 0.01089 0.01216 0.01302 0.37% Castro::computeNewDt() 9 0.01194 0.01252 0.01266 0.36% Castro::Castro() 1 0.01142 0.01173 0.01263 0.36% FabArray::setDomainBndry() 41 0.008676 0.01128 0.01257 0.35% Castro::construct_old_source() 50 0.007173 0.01021 0.01112 0.31% Castro::construct_old_gravity_source() 10 0.007128 0.01014 0.01104 0.31% Castro::initMFs() 1 0.00702 0.007352 0.009016 0.25% Castro::enforce_min_density() 62 0.005765 0.0063 0.006738 0.19% AmrLevel::AmrLevel(dm) 1 0.005783 0.005978 0.006619 0.19% StateData::define() 4 0.005763 0.00596 0.006601 0.19% Castro::swap_state_time_levels() 10 0.003427 0.004509 0.004901 0.14% Castro::finalize_advance() 10 0.003043 0.003267 0.003478 0.10% Castro::buildMetrics() 1 0.001746 0.00181 0.002088 0.06% Castro::post_regrid() 1 0.001607 0.001655 0.001733 0.05% Amr::InitAmr() 1 0.0002779 0.0003105 0.000423 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.104e-05 0.0001214 0.0001466 0.00% DistributionMapping::LeastUsedCPUs() 1 6.241e-06 0.0001153 0.0001395 0.00% Castro::enforce_consistent_e() 1 7.768e-05 8.591e-05 9.864e-05 0.00% FabArrayBase::getCPC() 41 7.426e-05 8.166e-05 9.307e-05 0.00% Amr::writeSmallPlotFile() 1 2.781e-05 4.99e-05 9.006e-05 0.00% Castro::enforce_speed_limit() 62 2.29e-05 2.582e-05 2.826e-05 0.00% FabArrayBase::CPC::define() 2 2.238e-05 2.479e-05 2.757e-05 0.00% Gravity::swapTimeLevels() 10 1.211e-05 1.496e-05 2.218e-05 0.00% Castro::retry_advance_ctu() 10 6.538e-06 8.992e-06 1.81e-05 0.00% Gravity::set_mass_offset() 10 9.356e-06 1.397e-05 1.7e-05 0.00% Castro::FluxRegCrseInit 10 7.011e-06 9.38e-06 1.334e-05 0.00% Castro::create_source_corrector() 10 7.676e-06 9.057e-06 1.073e-05 0.00% Amr::initSubcycle() 1 8.8e-06 9.362e-06 1.05e-05 0.00% Castro::FluxRegFineAdd() 10 2.068e-06 2.362e-06 3.152e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.112e-06 1.329e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-23-g02ac1f39bce4) finalized