MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-24-gd28b9ab1cd64) initialized Starting run at 15:29:33 UTC on 2023-06-17. Successfully read inputs file ... Castro git describe: 23.06-28-g6a5da1e93 AMReX git describe: 23.06-24-gd28b9ab1c Microphysics git describe: 23.06-15-g48f54771 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017426403 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361206231 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.390091182 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.371774016 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334544829 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367285495 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.344517561 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.316967945 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317800585 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.321155314 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.320561864 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.083444362 seconds Ending run at 15:29:36 UTC on 2023-06-17. Run time = 3.720419319 Run time without initialization = 3.53721604 Average number of zones advanced per microsecond: 0.741 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.719 ... 3.72 ... 3.72 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2703 2.3794 2.4364 65.49% Gravity::make_radial_gravity() 21 0.3269 0.339 0.3481 9.36% check_for_negative_density() 10 0.09299 0.1519 0.2635 7.08% Castro::estTimeStep() 21 0.02581 0.06926 0.1166 3.13% Castro::initData() 1 0.03855 0.07802 0.1134 3.05% FabArray::setVal() 143 0.06466 0.07207 0.08409 2.26% Amr::writePlotFile() 2 0.08095 0.08303 0.08399 2.26% amrex::Copy() 193 0.0629 0.07352 0.08303 2.23% FabArray::ParallelCopy_finish() 41 0.03666 0.05107 0.07666 2.06% Castro::reset_internal_energy(Fab) 1008 0.04789 0.04982 0.05187 1.39% Castro::normalize_species() 62 0.04091 0.04201 0.04374 1.18% FabArray::ParallelCopy_nowait() 41 0.0365 0.04181 0.04368 1.17% StateData::FillBoundary(geom) 41 0.0329 0.03645 0.03879 1.04% FillPatchIterator::Initialize 41 0.02968 0.03501 0.03729 1.00% Gravity::interpolate_monopole_grav() 21 0.02796 0.02831 0.02931 0.79% Castro::construct_new_gravity_source() 10 0.02297 0.02531 0.02846 0.76% Castro::initialize_do_advance() 10 0.01262 0.01844 0.02158 0.58% Castro::computeTemp() 63 0.01848 0.01964 0.02024 0.54% VisMF::Write(FabArray) 2 0.0138 0.01452 0.01732 0.47% Castro::initialize_advance() 10 0.008543 0.0114 0.01528 0.41% FabArray::Saxpy() 20 0.01229 0.01364 0.01418 0.38% MultiFab::contains_nan() 20 0.01112 0.01197 0.01296 0.35% FabArray::setDomainBndry() 41 0.008736 0.01174 0.01283 0.34% Castro::construct_old_gravity_source() 10 0.007437 0.01016 0.01074 0.29% Castro::initMFs() 1 0.006958 0.00725 0.009224 0.25% main() 1 0.00519 0.006411 0.007097 0.19% StateData::define() 4 0.005788 0.005927 0.006651 0.18% Castro::enforce_min_density() 62 0.005735 0.006102 0.006432 0.17% Castro::construct_new_source() 50 0.005697 0.006134 0.006283 0.17% Gravity::get_new_grav_vector() 11 0.003067 0.004032 0.005159 0.14% Castro::swap_state_time_levels() 10 0.003362 0.004525 0.004776 0.13% Amr::coarseTimeStep() 10 0.001655 0.002689 0.003625 0.10% Gravity::get_old_grav_vector() 10 0.001701 0.002497 0.002936 0.08% Castro::buildMetrics() 1 0.001636 0.001678 0.001933 0.05% Castro::finalize_do_advance() 10 0.0006917 0.001512 0.00181 0.05% Castro::expand_state() 10 0.0007859 0.0009268 0.001163 0.03% Amr::InitAmr() 1 0.0002573 0.0002876 0.0004577 0.01% Amr::timeStep() 10 0.0001841 0.000229 0.0003871 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002761 0.0003023 0.0003586 0.01% DistributionMapping::LeastUsedCPUs() 1 7.824e-06 0.0001865 0.0002141 0.01% Castro::clean_state() 62 0.0001283 0.000145 0.0001825 0.00% Castro::do_old_sources() 10 0.0001307 0.0001543 0.0001685 0.00% StateDataPhysBCFunct::() 41 9.82e-05 0.0001093 0.0001335 0.00% Castro::finalize_advance() 10 8.628e-05 0.0001026 0.0001212 0.00% Castro::do_advance_ctu() 10 8.435e-05 9.616e-05 0.0001073 0.00% FabArray::ParallelCopy() 41 6.802e-05 7.962e-05 0.0001022 0.00% Castro::enforce_consistent_e() 1 7.564e-05 8.789e-05 9.663e-05 0.00% Castro::Castro() 1 6.401e-05 7.541e-05 8.674e-05 0.00% FillPatchSingleLevel 41 6.075e-05 6.91e-05 8.466e-05 0.00% Castro::do_new_sources() 10 5.38e-05 6.828e-05 8.362e-05 0.00% Castro::construct_old_source() 50 5.057e-05 6.843e-05 7.983e-05 0.00% FabArrayBase::getCPC() 41 4.517e-05 5.908e-05 7.826e-05 0.00% Castro::apply_source_to_state() 20 3.884e-05 5.143e-05 7.1e-05 0.00% Amr::FinalizeInit() 1 3.723e-06 1.327e-05 7.015e-05 0.00% Amr::writeSmallPlotFile() 1 2.565e-05 5.014e-05 6.553e-05 0.00% Castro::construct_new_gravity() 10 3.283e-05 4.25e-05 5.927e-05 0.00% Castro::subcycle_advance_ctu() 10 3.969e-05 4.444e-05 5.311e-05 0.00% Castro::construct_old_gravity() 10 3.447e-05 4.357e-05 5.107e-05 0.00% Castro::advance() 10 3.289e-05 3.986e-05 4.581e-05 0.00% FabArrayBase::CPC::define() 2 2.149e-05 2.689e-05 3.724e-05 0.00% Castro::enforce_speed_limit() 62 2.426e-05 2.851e-05 3.604e-05 0.00% Castro::check_for_nan() 20 2.162e-05 2.541e-05 3.07e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.758e-05 2.238e-05 3.012e-05 0.00% Amr::defBaseLevel() 1 1.182e-05 1.509e-05 2.062e-05 0.00% Castro::post_timestep() 10 1.353e-05 1.455e-05 1.614e-05 0.00% Gravity::swapTimeLevels() 10 1.125e-05 1.339e-05 1.586e-05 0.00% Castro::computeNewDt() 9 9.025e-06 1.142e-05 1.421e-05 0.00% Gravity::set_mass_offset() 10 9.022e-06 1.13e-05 1.265e-05 0.00% Castro::FluxRegCrseInit 10 8.345e-06 9.6e-06 1.097e-05 0.00% Amr::initSubcycle() 1 8.243e-06 8.776e-06 1.019e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.55e-06 5.145e-06 1.011e-05 0.00% Castro::computeInitialDt() 2 4.079e-06 5.078e-06 9.478e-06 0.00% Castro::create_source_corrector() 10 7.153e-06 8.239e-06 9.246e-06 0.00% Castro::retry_advance_ctu() 10 6.286e-06 7.594e-06 9.224e-06 0.00% Amr::init() 1 1.851e-06 2.743e-06 7.06e-06 0.00% Castro::post_init() 1 2.931e-06 3.873e-06 5.43e-06 0.00% Amr::InitializeInit() 1 1.859e-06 2.429e-06 4.895e-06 0.00% Castro::post_regrid() 1 2.328e-06 3.528e-06 4.731e-06 0.00% Castro::FluxRegFineAdd() 10 1.776e-06 2.053e-06 2.422e-06 0.00% Amr::initialInit() 1 1.391e-06 1.729e-06 2.259e-06 0.00% DistributionMapping::Distribute() 1 8.96e-07 1.106e-06 1.35e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.719 3.72 3.72 100.00% Amr::coarseTimeStep() 10 3.447 3.447 3.447 92.64% Amr::timeStep() 10 3.433 3.434 3.435 92.33% Castro::advance() 10 3.417 3.418 3.418 91.88% Castro::subcycle_advance_ctu() 10 3.333 3.341 3.345 89.92% Castro::do_advance_ctu() 10 3.333 3.341 3.345 89.92% Castro::construct_ctu_hydro_source() 10 2.55 2.553 2.558 68.75% Gravity::make_radial_gravity() 21 0.3439 0.3559 0.3643 9.79% check_for_negative_density() 10 0.09299 0.1519 0.2635 7.08% Gravity::get_new_grav_vector() 11 0.2341 0.2362 0.2384 6.41% Castro::construct_old_gravity() 10 0.1974 0.204 0.2112 5.68% Castro::construct_new_gravity() 10 0.2076 0.2095 0.2111 5.67% Gravity::get_old_grav_vector() 10 0.1966 0.2033 0.2106 5.66% FillPatchIterator::Initialize 41 0.1636 0.1764 0.1901 5.11% Castro::initialize_do_advance() 10 0.1663 0.1776 0.187 5.03% Amr::init() 1 0.1826 0.1828 0.1828 4.91% Amr::initialInit() 1 0.165 0.1659 0.1666 4.48% FillPatchSingleLevel 41 0.115 0.1297 0.1514 4.07% Amr::InitializeInit() 1 0.06018 0.09995 0.1352 3.63% Amr::defBaseLevel() 1 0.06018 0.09995 0.1352 3.63% Castro::expand_state() 10 0.1086 0.1216 0.1308 3.51% Castro::clean_state() 62 0.1138 0.1171 0.1205 3.24% Castro::initData() 1 0.04254 0.08208 0.1176 3.16% Castro::estTimeStep() 21 0.02581 0.06926 0.1166 3.13% FabArray::ParallelCopy() 41 0.08019 0.09304 0.1134 3.05% Amr::FinalizeInit() 1 0.03123 0.06598 0.106 2.85% Amr::writePlotFile() 2 0.09975 0.1004 0.1011 2.72% Castro::do_old_sources() 10 0.09189 0.09434 0.09781 2.63% FabArray::setVal() 143 0.06466 0.07207 0.08409 2.26% amrex::Copy() 193 0.0629 0.07352 0.08303 2.23% Castro::initialize_advance() 10 0.06899 0.07322 0.08167 2.20% Castro::computeInitialDt() 2 0.002256 0.03752 0.07732 2.08% FabArray::ParallelCopy_finish() 41 0.03666 0.05107 0.07666 2.06% Castro::do_new_sources() 10 0.05993 0.06667 0.0765 2.06% Castro::computeTemp() 63 0.06746 0.06975 0.07217 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04816 0.05012 0.0522 1.40% Castro::reset_internal_energy(Fab) 1008 0.04789 0.04982 0.05187 1.39% FabArray::ParallelCopy_nowait() 41 0.03661 0.0419 0.04376 1.18% Castro::normalize_species() 62 0.04091 0.04201 0.04374 1.18% StateDataPhysBCFunct::() 41 0.033 0.03656 0.0389 1.05% StateData::FillBoundary(geom) 41 0.0329 0.03645 0.03879 1.04% Castro::construct_new_source() 50 0.02912 0.03144 0.03474 0.93% Castro::finalize_do_advance() 10 0.01396 0.02446 0.03217 0.86% Gravity::interpolate_monopole_grav() 21 0.02796 0.02831 0.02931 0.79% Castro::post_init() 1 0.02698 0.02801 0.02863 0.77% Castro::construct_new_gravity_source() 10 0.02297 0.02531 0.02846 0.76% VisMF::Write(FabArray) 2 0.0138 0.01452 0.01732 0.47% Castro::post_timestep() 10 0.01561 0.01602 0.01672 0.45% Castro::apply_source_to_state() 20 0.01236 0.01369 0.01424 0.38% FabArray::Saxpy() 20 0.01229 0.01364 0.01418 0.38% Castro::check_for_nan() 20 0.01114 0.01199 0.01298 0.35% MultiFab::contains_nan() 20 0.01112 0.01197 0.01296 0.35% FabArray::setDomainBndry() 41 0.008736 0.01174 0.01283 0.34% Castro::Castro() 1 0.01158 0.01172 0.01264 0.34% Castro::construct_old_source() 50 0.007494 0.01023 0.01082 0.29% Castro::construct_old_gravity_source() 10 0.007437 0.01016 0.01074 0.29% Castro::initMFs() 1 0.006958 0.00725 0.009224 0.25% Castro::computeNewDt() 9 0.008799 0.008815 0.008823 0.24% AmrLevel::AmrLevel(dm) 1 0.005805 0.00595 0.006675 0.18% StateData::define() 4 0.005788 0.005927 0.006651 0.18% Castro::enforce_min_density() 62 0.005735 0.006102 0.006432 0.17% Castro::swap_state_time_levels() 10 0.003362 0.004525 0.004776 0.13% Castro::finalize_advance() 10 0.002971 0.003446 0.003947 0.11% Castro::buildMetrics() 1 0.001762 0.001811 0.00209 0.06% Castro::post_regrid() 1 0.001545 0.001689 0.002054 0.06% Amr::InitAmr() 1 0.0002655 0.0002964 0.0004679 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.284e-05 0.0001927 0.000224 0.01% DistributionMapping::LeastUsedCPUs() 1 7.824e-06 0.0001865 0.0002141 0.01% FabArrayBase::getCPC() 41 7.07e-05 8.596e-05 0.0001122 0.00% Castro::enforce_consistent_e() 1 7.564e-05 8.789e-05 9.663e-05 0.00% Amr::writeSmallPlotFile() 1 2.565e-05 5.014e-05 6.553e-05 0.00% FabArrayBase::CPC::define() 2 2.149e-05 2.689e-05 3.724e-05 0.00% Castro::enforce_speed_limit() 62 2.426e-05 2.851e-05 3.604e-05 0.00% Gravity::swapTimeLevels() 10 1.125e-05 1.339e-05 1.586e-05 0.00% Gravity::set_mass_offset() 10 9.022e-06 1.13e-05 1.265e-05 0.00% Castro::FluxRegCrseInit 10 8.345e-06 9.6e-06 1.097e-05 0.00% Amr::initSubcycle() 1 8.243e-06 8.776e-06 1.019e-05 0.00% Castro::create_source_corrector() 10 7.153e-06 8.239e-06 9.246e-06 0.00% Castro::retry_advance_ctu() 10 6.286e-06 7.594e-06 9.224e-06 0.00% Castro::FluxRegFineAdd() 10 1.776e-06 2.053e-06 2.422e-06 0.00% DistributionMapping::Distribute() 1 8.96e-07 1.106e-06 1.35e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 30 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-24-gd28b9ab1cd64) finalized