MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-24-gd28b9ab1cd64) initialized Starting run at 22:04:01 UTC on 2023-06-17. Successfully read inputs file ... Castro git describe: 23.06-29-gcb066c089 AMReX git describe: 23.06-24-gd28b9ab1c Microphysics git describe: 23.06-18-ge429fdaa reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016569507 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.396898233 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.391968334 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.345159979 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339012814 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.365469336 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.340434067 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312563915 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312480534 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314416083 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311807336 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.0108901 seconds Ending run at 22:04:05 UTC on 2023-06-17. Run time = 3.630142316 Run time without initialization = 3.448781865 Average number of zones advanced per microsecond: 0.760 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.629 ... 3.63 ... 3.63 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3327 2.3921 2.4478 67.43% Gravity::make_radial_gravity() 21 0.3245 0.3351 0.3479 9.58% check_for_negative_density() 10 0.05456 0.1141 0.1769 4.87% Castro::estTimeStep() 21 0.0304 0.07402 0.1186 3.27% Castro::initData() 1 0.04021 0.07687 0.1135 3.13% amrex::Copy() 193 0.06687 0.07807 0.0891 2.45% FabArray::setVal() 143 0.06221 0.07137 0.08333 2.30% FabArray::ParallelCopy_finish() 41 0.03675 0.05479 0.07801 2.15% Castro::reset_internal_energy(Fab) 1008 0.04862 0.05038 0.05262 1.45% FabArray::ParallelCopy_nowait() 41 0.0363 0.04205 0.04384 1.21% Castro::normalize_species() 62 0.04087 0.04207 0.04337 1.19% StateData::FillBoundary(geom) 41 0.03351 0.03565 0.03848 1.06% FillPatchIterator::Initialize 41 0.02976 0.03502 0.03689 1.02% Castro::construct_new_gravity_source() 10 0.02262 0.0261 0.03226 0.89% Gravity::interpolate_monopole_grav() 21 0.02786 0.02833 0.02911 0.80% Castro::initialize_do_advance() 10 0.01288 0.01862 0.02182 0.60% Castro::computeTemp() 63 0.01954 0.02023 0.02106 0.58% VisMF::Write(FabArray) 2 0.01447 0.01507 0.01782 0.49% Castro::initialize_advance() 10 0.009589 0.01192 0.0157 0.43% FabArray::Saxpy() 20 0.01047 0.01243 0.01344 0.37% FabArray::setDomainBndry() 41 0.008918 0.01159 0.01296 0.36% MultiFab::contains_nan() 20 0.009919 0.01084 0.01183 0.33% Amr::writePlotFile() 2 0.007032 0.01001 0.0106 0.29% Castro::construct_old_gravity_source() 10 0.007297 0.009628 0.01017 0.28% Castro::initMFs() 1 0.007104 0.007618 0.00871 0.24% main() 1 0.005662 0.006545 0.006848 0.19% StateData::define() 4 0.005884 0.006201 0.006734 0.19% Castro::construct_new_source() 50 0.005761 0.006031 0.006489 0.18% Castro::enforce_min_density() 62 0.00578 0.006073 0.006357 0.18% Castro::swap_state_time_levels() 10 0.003387 0.00458 0.004812 0.13% Gravity::get_new_grav_vector() 11 0.003149 0.00392 0.004754 0.13% Amr::coarseTimeStep() 10 0.002114 0.003548 0.004177 0.12% Gravity::get_old_grav_vector() 10 0.001641 0.002068 0.002405 0.07% Castro::buildMetrics() 1 0.001665 0.001761 0.001955 0.05% Castro::finalize_do_advance() 10 0.0006987 0.001558 0.001933 0.05% Castro::expand_state() 10 0.0007469 0.001046 0.001244 0.03% Amr::timeStep() 10 0.000178 0.0002345 0.0005022 0.01% Amr::InitAmr() 1 0.0002689 0.0003087 0.0004601 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002803 0.0003005 0.0003412 0.01% DistributionMapping::LeastUsedCPUs() 1 6.931e-06 0.0001682 0.0001992 0.01% Castro::do_old_sources() 10 0.000162 0.0001727 0.0001893 0.01% Castro::clean_state() 62 0.0001377 0.0001444 0.0001574 0.00% Castro::do_advance_ctu() 10 0.000101 0.0001248 0.0001507 0.00% StateDataPhysBCFunct::() 41 8.912e-05 0.0001011 0.0001503 0.00% Castro::finalize_advance() 10 7.914e-05 9.79e-05 0.0001157 0.00% Castro::enforce_consistent_e() 1 7.483e-05 9.025e-05 0.0001026 0.00% Amr::FinalizeInit() 1 3.684e-06 1.658e-05 9.458e-05 0.00% Castro::Castro() 1 5.884e-05 7.345e-05 9.44e-05 0.00% Castro::construct_old_source() 50 5.558e-05 6.992e-05 8.732e-05 0.00% FabArray::ParallelCopy() 41 6.917e-05 7.367e-05 8.4e-05 0.00% FabArrayBase::getCPC() 41 4.732e-05 5.562e-05 8.202e-05 0.00% FillPatchSingleLevel 41 6.641e-05 7.182e-05 7.784e-05 0.00% Castro::do_new_sources() 10 5.576e-05 6.363e-05 7.358e-05 0.00% Amr::writeSmallPlotFile() 1 2.934e-05 4.413e-05 6.673e-05 0.00% Castro::subcycle_advance_ctu() 10 3.691e-05 4.906e-05 5.941e-05 0.00% Castro::advance() 10 3.655e-05 4.232e-05 5.907e-05 0.00% Castro::construct_new_gravity() 10 3.469e-05 4.353e-05 5.8e-05 0.00% Castro::apply_source_to_state() 20 3.944e-05 4.511e-05 5.022e-05 0.00% FabArrayBase::CPC::define() 2 2.026e-05 2.766e-05 4.674e-05 0.00% Castro::construct_old_gravity() 10 3.019e-05 3.32e-05 3.614e-05 0.00% Castro::enforce_speed_limit() 62 2.784e-05 3.034e-05 3.409e-05 0.00% Amr::defBaseLevel() 1 1.284e-05 1.671e-05 2.537e-05 0.00% Castro::check_for_nan() 20 2.141e-05 2.312e-05 2.509e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.626e-05 1.814e-05 2.134e-05 0.00% Gravity::swapTimeLevels() 10 1.15e-05 1.423e-05 1.784e-05 0.00% Castro::post_timestep() 10 1.428e-05 1.511e-05 1.659e-05 0.00% Gravity::set_mass_offset() 10 9.034e-06 1.211e-05 1.413e-05 0.00% Castro::computeNewDt() 9 8.991e-06 1.097e-05 1.299e-05 0.00% Castro::create_source_corrector() 10 7.197e-06 8.888e-06 1.081e-05 0.00% Amr::initSubcycle() 1 8.874e-06 9.47e-06 1.049e-05 0.00% Castro::FluxRegCrseInit 10 7.544e-06 8.944e-06 1.023e-05 0.00% Castro::retry_advance_ctu() 10 6.451e-06 7.516e-06 8.636e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.915e-06 5.46e-06 7.007e-06 0.00% Castro::computeInitialDt() 2 3.565e-06 4.709e-06 6.226e-06 0.00% Castro::post_regrid() 1 1.7e-06 3.259e-06 5.371e-06 0.00% Amr::InitializeInit() 1 1.788e-06 2.494e-06 5.184e-06 0.00% Castro::post_init() 1 3.165e-06 3.843e-06 4.565e-06 0.00% Castro::FluxRegFineAdd() 10 1.687e-06 2.348e-06 3.412e-06 0.00% Amr::initialInit() 1 1.797e-06 2.062e-06 2.628e-06 0.00% Amr::init() 1 1.515e-06 2.051e-06 2.446e-06 0.00% DistributionMapping::Distribute() 1 1.014e-06 1.262e-06 1.484e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.629 3.63 3.63 100.00% Amr::coarseTimeStep() 10 3.431 3.431 3.431 94.51% Amr::timeStep() 10 3.416 3.417 3.418 94.16% Castro::advance() 10 3.399 3.4 3.401 93.69% Castro::subcycle_advance_ctu() 10 3.315 3.322 3.328 91.68% Castro::do_advance_ctu() 10 3.315 3.322 3.328 91.68% Castro::construct_ctu_hydro_source() 10 2.524 2.528 2.533 69.76% Gravity::make_radial_gravity() 21 0.3412 0.3516 0.3626 9.99% Gravity::get_new_grav_vector() 11 0.2335 0.2354 0.2367 6.52% Castro::construct_new_gravity() 10 0.2089 0.21 0.2107 5.80% Castro::construct_old_gravity() 10 0.1942 0.2007 0.2099 5.78% Gravity::get_old_grav_vector() 10 0.1936 0.2001 0.2093 5.77% FillPatchIterator::Initialize 41 0.1646 0.1794 0.192 5.29% Castro::initialize_do_advance() 10 0.1686 0.1772 0.1863 5.13% Amr::init() 1 0.1808 0.1809 0.181 4.99% check_for_negative_density() 10 0.05456 0.1141 0.1769 4.87% Amr::initialInit() 1 0.1638 0.164 0.1643 4.53% FillPatchSingleLevel 41 0.119 0.1328 0.1488 4.10% Amr::InitializeInit() 1 0.06313 0.09889 0.1349 3.72% Amr::defBaseLevel() 1 0.06313 0.09888 0.1349 3.72% Castro::expand_state() 10 0.111 0.1213 0.1314 3.62% Castro::clean_state() 62 0.1158 0.1183 0.1228 3.38% Castro::estTimeStep() 21 0.0304 0.07402 0.1186 3.27% Castro::initData() 1 0.04395 0.08082 0.1177 3.24% FabArray::ParallelCopy() 41 0.08035 0.097 0.1145 3.15% Amr::FinalizeInit() 1 0.02913 0.06515 0.1007 2.78% Castro::do_old_sources() 10 0.09157 0.09558 0.09877 2.72% amrex::Copy() 193 0.06687 0.07807 0.0891 2.45% FabArray::setVal() 143 0.06221 0.07137 0.08333 2.30% Castro::initialize_advance() 10 0.06826 0.07449 0.0819 2.26% Castro::do_new_sources() 10 0.05877 0.06706 0.08142 2.24% FabArray::ParallelCopy_finish() 41 0.03675 0.05479 0.07801 2.15% Castro::computeTemp() 63 0.06877 0.0709 0.07398 2.04% Castro::computeInitialDt() 2 0.002175 0.03814 0.07392 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04891 0.05068 0.05292 1.46% Castro::reset_internal_energy(Fab) 1008 0.04862 0.05038 0.05262 1.45% FabArray::ParallelCopy_nowait() 41 0.03641 0.04214 0.04393 1.21% Castro::normalize_species() 62 0.04087 0.04207 0.04337 1.19% Castro::construct_new_source() 50 0.02846 0.03213 0.03874 1.07% StateDataPhysBCFunct::() 41 0.0336 0.03576 0.03857 1.06% StateData::FillBoundary(geom) 41 0.03351 0.03565 0.03848 1.06% Castro::finalize_do_advance() 10 0.01234 0.02792 0.03723 1.03% Castro::construct_new_gravity_source() 10 0.02262 0.0261 0.03226 0.89% Gravity::interpolate_monopole_grav() 21 0.02786 0.02833 0.02911 0.80% Amr::writePlotFile() 2 0.02769 0.0279 0.02812 0.77% Castro::post_init() 1 0.02609 0.02658 0.02685 0.74% VisMF::Write(FabArray) 2 0.01447 0.01507 0.01782 0.49% Castro::post_timestep() 10 0.01573 0.0164 0.01705 0.47% Castro::apply_source_to_state() 20 0.01052 0.01247 0.01349 0.37% FabArray::Saxpy() 20 0.01047 0.01243 0.01344 0.37% FabArray::setDomainBndry() 41 0.008918 0.01159 0.01296 0.36% Castro::Castro() 1 0.01107 0.01165 0.01257 0.35% Castro::check_for_nan() 20 0.00994 0.01086 0.01186 0.33% MultiFab::contains_nan() 20 0.009919 0.01084 0.01183 0.33% Castro::construct_old_source() 50 0.007352 0.009698 0.01025 0.28% Castro::construct_old_gravity_source() 10 0.007297 0.009628 0.01017 0.28% Castro::computeNewDt() 9 0.009521 0.009529 0.009536 0.26% Castro::initMFs() 1 0.007104 0.007618 0.00871 0.24% AmrLevel::AmrLevel(dm) 1 0.005903 0.006219 0.006753 0.19% StateData::define() 4 0.005884 0.006201 0.006734 0.19% Castro::enforce_min_density() 62 0.00578 0.006073 0.006357 0.18% Castro::swap_state_time_levels() 10 0.003387 0.00458 0.004812 0.13% Castro::finalize_advance() 10 0.002877 0.003425 0.004062 0.11% Castro::buildMetrics() 1 0.001795 0.001914 0.002136 0.06% Castro::post_regrid() 1 0.001539 0.001647 0.001922 0.05% Amr::InitAmr() 1 0.0002785 0.0003182 0.0004706 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.195e-05 0.0001749 0.0002071 0.01% DistributionMapping::LeastUsedCPUs() 1 6.931e-06 0.0001682 0.0001992 0.01% FabArrayBase::getCPC() 41 6.908e-05 8.327e-05 0.0001172 0.00% Castro::enforce_consistent_e() 1 7.483e-05 9.025e-05 0.0001026 0.00% Amr::writeSmallPlotFile() 1 2.934e-05 4.413e-05 6.673e-05 0.00% FabArrayBase::CPC::define() 2 2.026e-05 2.766e-05 4.674e-05 0.00% Castro::enforce_speed_limit() 62 2.784e-05 3.034e-05 3.409e-05 0.00% Gravity::swapTimeLevels() 10 1.15e-05 1.423e-05 1.784e-05 0.00% Gravity::set_mass_offset() 10 9.034e-06 1.211e-05 1.413e-05 0.00% Castro::create_source_corrector() 10 7.197e-06 8.888e-06 1.081e-05 0.00% Amr::initSubcycle() 1 8.874e-06 9.47e-06 1.049e-05 0.00% Castro::FluxRegCrseInit 10 7.544e-06 8.944e-06 1.023e-05 0.00% Castro::retry_advance_ctu() 10 6.451e-06 7.516e-06 8.636e-06 0.00% Castro::FluxRegFineAdd() 10 1.687e-06 2.348e-06 3.412e-06 0.00% DistributionMapping::Distribute() 1 1.014e-06 1.262e-06 1.484e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-24-gd28b9ab1cd64) finalized