MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-24-gd28b9ab1cd64) initialized Starting run at 14:35:31 UTC on 2023-06-19. Successfully read inputs file ... Castro git describe: 23.06-33-g7a1ad2468 AMReX git describe: 23.06-24-gd28b9ab1c Microphysics git describe: 23.06-26-g1dd6fa69 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016376516 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.378297277 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350952545 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329149473 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.329727325 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356414234 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.35967178 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31556694 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317500223 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.320018474 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316681747 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010457047 seconds Ending run at 14:35:35 UTC on 2023-06-19. Run time = 3.575407912 Run time without initialization = 3.391261731 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.575 ... 3.575 ... 3.575 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3397 2.3637 2.4017 67.17% Gravity::make_radial_gravity() 21 0.3222 0.3295 0.342 9.56% Castro::estTimeStep() 21 0.04591 0.07756 0.1187 3.32% Castro::initData() 1 0.04025 0.07888 0.1137 3.18% check_for_negative_density() 10 0.03528 0.07379 0.1006 2.81% FabArray::setVal() 143 0.06381 0.07508 0.08925 2.50% amrex::Copy() 193 0.06691 0.0787 0.08822 2.47% FabArray::ParallelCopy_finish() 41 0.04828 0.06573 0.08672 2.43% Castro::reset_internal_energy(Fab) 1008 0.04766 0.04976 0.05242 1.47% Castro::normalize_species() 62 0.0412 0.04214 0.04334 1.21% FabArray::ParallelCopy_nowait() 41 0.03539 0.04073 0.04247 1.19% StateData::FillBoundary(geom) 41 0.03245 0.0353 0.03885 1.09% FillPatchIterator::Initialize 41 0.02992 0.03404 0.03863 1.08% Castro::construct_new_gravity_source() 10 0.02398 0.02628 0.03136 0.88% Gravity::interpolate_monopole_grav() 21 0.02816 0.02878 0.03087 0.86% Castro::initialize_do_advance() 10 0.01304 0.01877 0.02374 0.66% Castro::computeTemp() 63 0.017 0.01921 0.02017 0.56% VisMF::Write(FabArray) 2 0.01386 0.01457 0.01724 0.48% Castro::initialize_advance() 10 0.008611 0.01167 0.0156 0.44% FabArray::Saxpy() 20 0.01104 0.013 0.01454 0.41% FabArray::setDomainBndry() 41 0.008914 0.01111 0.01217 0.34% MultiFab::contains_nan() 20 0.009546 0.01062 0.01192 0.33% Amr::writePlotFile() 2 0.006984 0.009921 0.0105 0.29% Castro::construct_old_gravity_source() 10 0.007024 0.00958 0.01029 0.29% Castro::initMFs() 1 0.007355 0.007844 0.009207 0.26% Amr::coarseTimeStep() 10 0.001258 0.007076 0.008966 0.25% StateData::define() 4 0.005989 0.006226 0.006908 0.19% Castro::construct_new_source() 50 0.005858 0.006367 0.006713 0.19% Castro::enforce_min_density() 62 0.005739 0.006033 0.006664 0.19% main() 1 0.00578 0.006002 0.006155 0.17% Castro::swap_state_time_levels() 10 0.003408 0.004655 0.005475 0.15% Gravity::get_new_grav_vector() 11 0.003178 0.003648 0.004091 0.11% Gravity::get_old_grav_vector() 10 0.001523 0.002045 0.002529 0.07% Castro::finalize_do_advance() 10 0.0005819 0.001727 0.002199 0.06% Castro::buildMetrics() 1 0.0017 0.001776 0.001987 0.06% Castro::expand_state() 10 0.0007621 0.000945 0.001105 0.03% Amr::InitAmr() 1 0.0002968 0.0003202 0.0004077 0.01% Amr::timeStep() 10 0.0001656 0.0002094 0.0003754 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002803 0.0003001 0.0003208 0.01% Castro::do_old_sources() 10 0.000136 0.0001577 0.0001716 0.00% Castro::clean_state() 62 0.0001316 0.0001517 0.000165 0.00% Castro::do_advance_ctu() 10 9.081e-05 0.0001301 0.000154 0.00% StateDataPhysBCFunct::() 41 8.953e-05 0.0001147 0.0001471 0.00% Castro::finalize_advance() 10 9.247e-05 0.0001118 0.0001367 0.00% DistributionMapping::LeastUsedCPUs() 1 7.804e-06 0.0001005 0.0001223 0.00% Castro::enforce_consistent_e() 1 7.302e-05 8.425e-05 9.567e-05 0.00% Castro::Castro() 1 5.614e-05 6.844e-05 8.731e-05 0.00% FabArray::ParallelCopy() 41 6.692e-05 7.734e-05 8.455e-05 0.00% Castro::advance() 10 3.471e-05 4.507e-05 8.301e-05 0.00% Castro::do_new_sources() 10 5.041e-05 6.315e-05 7.566e-05 0.00% FabArrayBase::getCPC() 41 4.317e-05 6.151e-05 7.566e-05 0.00% FillPatchSingleLevel 41 6.215e-05 7.107e-05 7.493e-05 0.00% Castro::construct_old_source() 50 4.623e-05 6.304e-05 7.409e-05 0.00% Amr::FinalizeInit() 1 4.488e-06 1.391e-05 7.13e-05 0.00% Amr::writeSmallPlotFile() 1 2.696e-05 5.502e-05 6.654e-05 0.00% Castro::construct_new_gravity() 10 4.148e-05 4.796e-05 6.416e-05 0.00% Castro::subcycle_advance_ctu() 10 3.814e-05 4.991e-05 5.801e-05 0.00% Castro::apply_source_to_state() 20 3.251e-05 4.514e-05 5.518e-05 0.00% Castro::construct_old_gravity() 10 3.67e-05 4.363e-05 4.907e-05 0.00% Castro::enforce_speed_limit() 62 2.537e-05 2.935e-05 3.704e-05 0.00% Castro::retry_advance_ctu() 10 6.597e-06 1.053e-05 3.281e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.817e-05 2.186e-05 3e-05 0.00% FabArrayBase::CPC::define() 2 1.965e-05 2.473e-05 2.825e-05 0.00% Castro::check_for_nan() 20 1.982e-05 2.235e-05 2.422e-05 0.00% Amr::defBaseLevel() 1 1.188e-05 1.569e-05 2.244e-05 0.00% Gravity::set_mass_offset() 10 8.826e-06 1.416e-05 2.241e-05 0.00% Castro::post_timestep() 10 1.294e-05 1.584e-05 2.013e-05 0.00% Castro::FluxRegCrseInit 10 7.429e-06 1.298e-05 1.741e-05 0.00% Gravity::swapTimeLevels() 10 1.197e-05 1.382e-05 1.517e-05 0.00% Castro::computeNewDt() 9 8.994e-06 1.118e-05 1.377e-05 0.00% Amr::initSubcycle() 1 8.566e-06 9.601e-06 1.071e-05 0.00% Castro::post_init() 1 2.864e-06 5.061e-06 1.027e-05 0.00% Amr::InitializeInit() 1 1.868e-06 3.361e-06 9.727e-06 0.00% Castro::create_source_corrector() 10 7.535e-06 8.619e-06 9.675e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.801e-06 5.466e-06 6.988e-06 0.00% Castro::post_regrid() 1 1.925e-06 3.646e-06 5.848e-06 0.00% Castro::computeInitialDt() 2 3.583e-06 4.417e-06 5.616e-06 0.00% Amr::init() 1 1.638e-06 2.187e-06 3.27e-06 0.00% Castro::FluxRegFineAdd() 10 1.751e-06 2.238e-06 3.154e-06 0.00% Amr::initialInit() 1 1.538e-06 1.824e-06 2.35e-06 0.00% DistributionMapping::Distribute() 1 8.46e-07 1.299e-06 1.781e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.575 3.575 3.575 100.00% Amr::coarseTimeStep() 10 3.375 3.375 3.375 94.39% Amr::timeStep() 10 3.356 3.358 3.364 94.08% Castro::advance() 10 3.34 3.341 3.343 93.51% Castro::subcycle_advance_ctu() 10 3.249 3.26 3.268 91.39% Castro::do_advance_ctu() 10 3.249 3.26 3.268 91.39% Castro::construct_ctu_hydro_source() 10 2.455 2.458 2.461 68.84% Gravity::make_radial_gravity() 21 0.3394 0.3464 0.3572 9.99% Gravity::get_new_grav_vector() 11 0.227 0.2301 0.235 6.57% Castro::construct_old_gravity() 10 0.1966 0.2029 0.2117 5.92% Gravity::get_old_grav_vector() 10 0.1959 0.2021 0.2112 5.91% Castro::construct_new_gravity() 10 0.2002 0.2025 0.2081 5.82% FillPatchIterator::Initialize 41 0.1628 0.1873 0.2026 5.67% Castro::initialize_do_advance() 10 0.1707 0.1816 0.1941 5.43% Amr::init() 1 0.1836 0.1837 0.1837 5.14% Amr::initialInit() 1 0.1666 0.167 0.1671 4.67% FillPatchSingleLevel 41 0.123 0.1421 0.1549 4.33% Castro::expand_state() 10 0.1123 0.1261 0.1391 3.89% Amr::InitializeInit() 1 0.06197 0.1012 0.1358 3.80% Amr::defBaseLevel() 1 0.06197 0.1012 0.1358 3.80% FabArray::ParallelCopy() 41 0.0884 0.1066 0.1223 3.42% Castro::clean_state() 62 0.112 0.1167 0.1217 3.40% Castro::estTimeStep() 21 0.04591 0.07756 0.1187 3.32% Castro::initData() 1 0.0442 0.08282 0.1179 3.30% Amr::FinalizeInit() 1 0.03105 0.06575 0.1051 2.94% check_for_negative_density() 10 0.03528 0.07379 0.1006 2.81% Castro::do_old_sources() 10 0.09242 0.0964 0.1005 2.81% FabArray::setVal() 143 0.06381 0.07508 0.08925 2.50% amrex::Copy() 193 0.06691 0.0787 0.08822 2.47% Castro::initialize_advance() 10 0.07031 0.07782 0.08801 2.46% FabArray::ParallelCopy_finish() 41 0.04828 0.06573 0.08672 2.43% Castro::do_new_sources() 10 0.06065 0.06775 0.08225 2.30% Castro::computeInitialDt() 2 0.002209 0.03682 0.07596 2.12% Castro::computeTemp() 63 0.06544 0.06926 0.07245 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04795 0.05006 0.05272 1.47% Castro::reset_internal_energy(Fab) 1008 0.04766 0.04976 0.05242 1.47% Castro::normalize_species() 62 0.0412 0.04214 0.04334 1.21% Castro::finalize_do_advance() 10 0.01471 0.034 0.04309 1.21% FabArray::ParallelCopy_nowait() 41 0.03549 0.04082 0.04254 1.19% StateDataPhysBCFunct::() 41 0.03257 0.03541 0.03897 1.09% StateData::FillBoundary(geom) 41 0.03245 0.0353 0.03885 1.09% Castro::construct_new_source() 50 0.03016 0.03264 0.03806 1.06% Castro::construct_new_gravity_source() 10 0.02398 0.02628 0.03136 0.88% Gravity::interpolate_monopole_grav() 21 0.02816 0.02878 0.03087 0.86% Castro::post_init() 1 0.02819 0.02852 0.02872 0.80% Amr::writePlotFile() 2 0.02709 0.02726 0.02767 0.77% Castro::post_timestep() 10 0.01531 0.01632 0.02007 0.56% VisMF::Write(FabArray) 2 0.01386 0.01457 0.01724 0.48% Castro::apply_source_to_state() 20 0.01108 0.01305 0.01458 0.41% FabArray::Saxpy() 20 0.01104 0.013 0.01454 0.41% Castro::Castro() 1 0.01168 0.01201 0.0128 0.36% FabArray::setDomainBndry() 41 0.008914 0.01111 0.01217 0.34% Castro::check_for_nan() 20 0.009569 0.01065 0.01194 0.33% MultiFab::contains_nan() 20 0.009546 0.01062 0.01192 0.33% Castro::construct_old_source() 50 0.00707 0.009643 0.01036 0.29% Castro::construct_old_gravity_source() 10 0.007024 0.00958 0.01029 0.29% Castro::initMFs() 1 0.007355 0.007844 0.009207 0.26% Castro::computeNewDt() 9 0.008473 0.008479 0.008487 0.24% AmrLevel::AmrLevel(dm) 1 0.006008 0.006248 0.006928 0.19% StateData::define() 4 0.005989 0.006226 0.006908 0.19% Castro::enforce_min_density() 62 0.005739 0.006033 0.006664 0.19% Castro::finalize_advance() 10 0.002945 0.003921 0.005657 0.16% Castro::swap_state_time_levels() 10 0.003408 0.004655 0.005475 0.15% Castro::buildMetrics() 1 0.001819 0.00191 0.002148 0.06% Castro::post_regrid() 1 0.001553 0.001628 0.001855 0.05% Amr::InitAmr() 1 0.0003061 0.0003298 0.0004169 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.248e-05 0.0001073 0.0001308 0.00% DistributionMapping::LeastUsedCPUs() 1 7.804e-06 0.0001005 0.0001223 0.00% FabArrayBase::getCPC() 41 7.063e-05 8.624e-05 0.0001036 0.00% Castro::enforce_consistent_e() 1 7.302e-05 8.425e-05 9.567e-05 0.00% Amr::writeSmallPlotFile() 1 2.696e-05 5.502e-05 6.654e-05 0.00% Castro::enforce_speed_limit() 62 2.537e-05 2.935e-05 3.704e-05 0.00% Castro::retry_advance_ctu() 10 6.597e-06 1.053e-05 3.281e-05 0.00% FabArrayBase::CPC::define() 2 1.965e-05 2.473e-05 2.825e-05 0.00% Gravity::set_mass_offset() 10 8.826e-06 1.416e-05 2.241e-05 0.00% Castro::FluxRegCrseInit 10 7.429e-06 1.298e-05 1.741e-05 0.00% Gravity::swapTimeLevels() 10 1.197e-05 1.382e-05 1.517e-05 0.00% Amr::initSubcycle() 1 8.566e-06 9.601e-06 1.071e-05 0.00% Castro::create_source_corrector() 10 7.535e-06 8.619e-06 9.675e-06 0.00% Castro::FluxRegFineAdd() 10 1.751e-06 2.238e-06 3.154e-06 0.00% DistributionMapping::Distribute() 1 8.46e-07 1.299e-06 1.781e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-24-gd28b9ab1cd64) finalized