MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-24-gd28b9ab1cd64) initialized Starting run at 15:32:29 UTC on 2023-06-19. Successfully read inputs file ... Castro git describe: 23.06-33-gcd28d68bb AMReX git describe: 23.06-24-gd28b9ab1c Microphysics git describe: 23.06-28-gb8fdd3ab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016099989 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.359168211 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353430031 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334105809 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332353574 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.352136293 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.356604963 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31442499 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314263803 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313284188 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313052164 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010275273 seconds Ending run at 15:32:33 UTC on 2023-06-19. Run time = 3.554123161 Run time without initialization = 3.360901677 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.553 ... 3.554 ... 3.554 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2876 2.3623 2.4048 67.66% Gravity::make_radial_gravity() 21 0.3097 0.3174 0.3338 9.39% check_for_negative_density() 10 0.01646 0.05862 0.1354 3.81% Castro::estTimeStep() 21 0.03696 0.08411 0.133 3.74% Castro::initData() 1 0.03891 0.07901 0.1233 3.47% FabArray::ParallelCopy_finish() 41 0.03316 0.06222 0.09257 2.60% amrex::Copy() 193 0.06559 0.07901 0.08927 2.51% FabArray::setVal() 143 0.06295 0.07311 0.0845 2.38% Castro::reset_internal_energy(Fab) 1008 0.04846 0.04939 0.05011 1.41% FabArray::ParallelCopy_nowait() 41 0.03495 0.04143 0.04391 1.24% Castro::normalize_species() 62 0.04059 0.04207 0.04285 1.21% FillPatchIterator::Initialize 41 0.02822 0.03591 0.04269 1.20% StateData::FillBoundary(geom) 41 0.03526 0.03719 0.04035 1.14% Castro::construct_new_gravity_source() 10 0.02329 0.02833 0.03983 1.12% Gravity::interpolate_monopole_grav() 21 0.02817 0.0285 0.02878 0.81% Castro::initialize_do_advance() 10 0.01174 0.01905 0.02368 0.67% Castro::computeTemp() 63 0.01931 0.01964 0.02004 0.56% VisMF::Write(FabArray) 2 0.01359 0.01423 0.01688 0.47% Castro::initialize_advance() 10 0.009636 0.01176 0.01542 0.43% FabArray::Saxpy() 20 0.01037 0.01308 0.01404 0.40% FabArray::setDomainBndry() 41 0.008866 0.01166 0.01284 0.36% MultiFab::contains_nan() 20 0.01117 0.01174 0.01273 0.36% Amr::writePlotFile() 2 0.006941 0.009814 0.01112 0.31% Castro::construct_old_gravity_source() 10 0.006865 0.009557 0.01023 0.29% Castro::construct_new_source() 50 0.005614 0.006996 0.009487 0.27% Castro::initMFs() 1 0.007114 0.007567 0.008575 0.24% StateData::define() 4 0.005776 0.006536 0.008369 0.24% main() 1 0.00546 0.006612 0.007046 0.20% Castro::enforce_min_density() 62 0.005649 0.006116 0.006375 0.18% Castro::swap_state_time_levels() 10 0.003328 0.00445 0.004844 0.14% Gravity::get_new_grav_vector() 11 0.003085 0.003921 0.004259 0.12% Amr::coarseTimeStep() 10 0.001715 0.002965 0.003667 0.10% Gravity::get_old_grav_vector() 10 0.0017 0.002083 0.00255 0.07% Castro::finalize_do_advance() 10 0.0006636 0.001837 0.002257 0.06% Castro::buildMetrics() 1 0.00164 0.001773 0.002157 0.06% Castro::expand_state() 10 0.0006745 0.000883 0.00111 0.03% Amr::InitAmr() 1 0.0002867 0.0003555 0.000623 0.02% Amr::timeStep() 10 0.0001489 0.000221 0.000482 0.01% DistributionMapping::LeastUsedCPUs() 1 9.536e-06 0.0003125 0.000391 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002799 0.0003009 0.0003171 0.01% Castro::do_old_sources() 10 0.0001449 0.0001669 0.0001904 0.01% Castro::clean_state() 62 0.0001464 0.0001533 0.0001608 0.00% Castro::do_advance_ctu() 10 0.0001071 0.0001239 0.0001458 0.00% Castro::finalize_advance() 10 8.021e-05 0.000104 0.0001318 0.00% StateDataPhysBCFunct::() 41 8.626e-05 0.0001019 0.0001274 0.00% Castro::do_new_sources() 10 5.395e-05 7.235e-05 0.0001237 0.00% Castro::Castro() 1 5.268e-05 7.426e-05 9.192e-05 0.00% Castro::enforce_consistent_e() 1 8.284e-05 8.658e-05 9.144e-05 0.00% FabArray::ParallelCopy() 41 6.201e-05 7.487e-05 9.1e-05 0.00% Amr::FinalizeInit() 1 4.21e-06 1.537e-05 8.8e-05 0.00% FillPatchSingleLevel 41 5.947e-05 6.991e-05 8.038e-05 0.00% Castro::construct_old_source() 50 5.021e-05 7.08e-05 7.761e-05 0.00% FabArrayBase::getCPC() 41 4.429e-05 5.756e-05 7.441e-05 0.00% Castro::construct_new_gravity() 10 3.869e-05 4.979e-05 7.269e-05 0.00% Amr::writeSmallPlotFile() 1 2.823e-05 5.136e-05 6.406e-05 0.00% Castro::construct_old_gravity() 10 3.84e-05 4.807e-05 6.266e-05 0.00% Castro::apply_source_to_state() 20 3.806e-05 4.666e-05 5.794e-05 0.00% Castro::subcycle_advance_ctu() 10 3.71e-05 4.526e-05 5.451e-05 0.00% Castro::retry_advance_ctu() 10 6.67e-06 1.316e-05 5.112e-05 0.00% Castro::advance() 10 3.488e-05 4.058e-05 4.89e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.776e-05 2.533e-05 3.338e-05 0.00% FabArrayBase::CPC::define() 2 2.322e-05 2.678e-05 3.325e-05 0.00% Castro::enforce_speed_limit() 62 2.57e-05 2.741e-05 3.151e-05 0.00% Castro::check_for_nan() 20 2.042e-05 2.314e-05 2.54e-05 0.00% Amr::defBaseLevel() 1 1.308e-05 1.856e-05 2.463e-05 0.00% Gravity::swapTimeLevels() 10 1.207e-05 1.507e-05 2.328e-05 0.00% Castro::post_timestep() 10 1.339e-05 1.567e-05 2.051e-05 0.00% Castro::FluxRegCrseInit 10 8.491e-06 1.181e-05 1.835e-05 0.00% Gravity::set_mass_offset() 10 9.694e-06 1.201e-05 1.832e-05 0.00% Amr::initSubcycle() 1 8.611e-06 1.076e-05 1.592e-05 0.00% Castro::create_source_corrector() 10 7.374e-06 9.423e-06 1.441e-05 0.00% Castro::computeNewDt() 9 8.853e-06 1.067e-05 1.178e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.241e-06 6.215e-06 7.258e-06 0.00% Amr::InitializeInit() 1 1.876e-06 2.698e-06 6.116e-06 0.00% Castro::computeInitialDt() 2 3.677e-06 4.517e-06 5.328e-06 0.00% Castro::post_init() 1 3.129e-06 3.908e-06 5.273e-06 0.00% Castro::post_regrid() 1 2.055e-06 3.195e-06 3.919e-06 0.00% Castro::FluxRegFineAdd() 10 1.817e-06 2.234e-06 2.748e-06 0.00% Amr::init() 1 1.779e-06 2.14e-06 2.357e-06 0.00% Amr::initialInit() 1 1.575e-06 1.892e-06 2.201e-06 0.00% DistributionMapping::Distribute() 1 9.71e-07 1.313e-06 1.682e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.553 3.554 3.554 100.00% Amr::coarseTimeStep() 10 3.344 3.344 3.344 94.08% Amr::timeStep() 10 3.33 3.331 3.332 93.76% Castro::advance() 10 3.314 3.315 3.316 93.31% Castro::subcycle_advance_ctu() 10 3.224 3.234 3.242 91.22% Castro::do_advance_ctu() 10 3.224 3.234 3.242 91.22% Castro::construct_ctu_hydro_source() 10 2.439 2.442 2.444 68.77% Gravity::make_radial_gravity() 21 0.3267 0.3343 0.3474 9.77% Gravity::get_new_grav_vector() 11 0.2206 0.2215 0.2225 6.26% Castro::construct_old_gravity() 10 0.1912 0.1976 0.2079 5.85% Gravity::get_old_grav_vector() 10 0.1906 0.1968 0.2073 5.83% FillPatchIterator::Initialize 41 0.1653 0.1887 0.205 5.77% Castro::initialize_do_advance() 10 0.1735 0.1869 0.2003 5.64% Castro::construct_new_gravity() 10 0.196 0.1964 0.1969 5.54% Amr::init() 1 0.1924 0.1927 0.1928 5.42% Amr::initialInit() 1 0.176 0.1763 0.1765 4.97% FillPatchSingleLevel 41 0.1105 0.1412 0.1632 4.59% Amr::InitializeInit() 1 0.06039 0.1011 0.1475 4.15% Amr::defBaseLevel() 1 0.06039 0.1011 0.1475 4.15% Castro::expand_state() 10 0.1125 0.1303 0.1447 4.07% check_for_negative_density() 10 0.01646 0.05862 0.1354 3.81% Castro::estTimeStep() 21 0.03696 0.08411 0.133 3.74% FabArray::ParallelCopy() 41 0.07504 0.1038 0.1277 3.59% Castro::initData() 1 0.04296 0.08285 0.1269 3.57% Castro::clean_state() 62 0.1144 0.1167 0.1181 3.32% Amr::FinalizeInit() 1 0.02848 0.07518 0.1161 3.27% Castro::do_old_sources() 10 0.09052 0.09534 0.09883 2.78% FabArray::ParallelCopy_finish() 41 0.03316 0.06222 0.09257 2.60% Castro::computeInitialDt() 2 0.002008 0.04857 0.08935 2.51% amrex::Copy() 193 0.06559 0.07901 0.08927 2.51% Castro::initialize_advance() 10 0.06913 0.07725 0.08731 2.46% Castro::do_new_sources() 10 0.06052 0.07008 0.08564 2.41% FabArray::setVal() 143 0.06295 0.07311 0.0845 2.38% Castro::computeTemp() 63 0.0685 0.06933 0.06998 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04874 0.04969 0.05042 1.42% Castro::reset_internal_energy(Fab) 1008 0.04846 0.04939 0.05011 1.41% Castro::construct_new_source() 50 0.02928 0.03533 0.04639 1.31% FabArray::ParallelCopy_nowait() 41 0.03505 0.04151 0.044 1.24% Castro::normalize_species() 62 0.04059 0.04207 0.04285 1.21% StateDataPhysBCFunct::() 41 0.03537 0.03729 0.04046 1.14% StateData::FillBoundary(geom) 41 0.03526 0.03719 0.04035 1.14% Castro::construct_new_gravity_source() 10 0.02329 0.02833 0.03983 1.12% Castro::finalize_do_advance() 10 0.01306 0.02889 0.03911 1.10% Gravity::interpolate_monopole_grav() 21 0.02817 0.0285 0.02878 0.81% Amr::writePlotFile() 2 0.02658 0.02678 0.02692 0.76% Castro::post_init() 1 0.02594 0.02605 0.02615 0.74% VisMF::Write(FabArray) 2 0.01359 0.01423 0.01688 0.47% Castro::post_timestep() 10 0.01537 0.01597 0.01642 0.46% Castro::apply_source_to_state() 20 0.01042 0.01312 0.01409 0.40% FabArray::Saxpy() 20 0.01037 0.01308 0.01404 0.40% FabArray::setDomainBndry() 41 0.008866 0.01166 0.01284 0.36% Castro::check_for_nan() 20 0.01119 0.01177 0.01275 0.36% MultiFab::contains_nan() 20 0.01117 0.01174 0.01273 0.36% Castro::Castro() 1 0.01087 0.01134 0.01209 0.34% Castro::construct_old_source() 50 0.006915 0.009627 0.01031 0.29% Castro::construct_old_gravity_source() 10 0.006865 0.009557 0.01023 0.29% Castro::initMFs() 1 0.007114 0.007567 0.008575 0.24% Castro::computeNewDt() 9 0.008499 0.008505 0.008514 0.24% AmrLevel::AmrLevel(dm) 1 0.005794 0.006561 0.008402 0.24% StateData::define() 4 0.005776 0.006536 0.008369 0.24% Castro::enforce_min_density() 62 0.005649 0.006116 0.006375 0.18% Castro::finalize_advance() 10 0.002885 0.003923 0.005317 0.15% Castro::swap_state_time_levels() 10 0.003328 0.00445 0.004844 0.14% Castro::buildMetrics() 1 0.00176 0.001912 0.002363 0.07% Castro::post_regrid() 1 0.001531 0.001604 0.001662 0.05% Amr::InitAmr() 1 0.0002957 0.0003663 0.0006384 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.546e-05 0.0003201 0.0003995 0.01% DistributionMapping::LeastUsedCPUs() 1 9.536e-06 0.0003125 0.000391 0.01% FabArrayBase::getCPC() 41 6.751e-05 8.434e-05 0.0001012 0.00% Castro::enforce_consistent_e() 1 8.284e-05 8.658e-05 9.144e-05 0.00% Amr::writeSmallPlotFile() 1 2.823e-05 5.136e-05 6.406e-05 0.00% Castro::retry_advance_ctu() 10 6.67e-06 1.316e-05 5.112e-05 0.00% FabArrayBase::CPC::define() 2 2.322e-05 2.678e-05 3.325e-05 0.00% Castro::enforce_speed_limit() 62 2.57e-05 2.741e-05 3.151e-05 0.00% Gravity::swapTimeLevels() 10 1.207e-05 1.507e-05 2.328e-05 0.00% Castro::FluxRegCrseInit 10 8.491e-06 1.181e-05 1.835e-05 0.00% Gravity::set_mass_offset() 10 9.694e-06 1.201e-05 1.832e-05 0.00% Amr::initSubcycle() 1 8.611e-06 1.076e-05 1.592e-05 0.00% Castro::create_source_corrector() 10 7.374e-06 9.423e-06 1.441e-05 0.00% Castro::FluxRegFineAdd() 10 1.817e-06 2.234e-06 2.748e-06 0.00% DistributionMapping::Distribute() 1 9.71e-07 1.313e-06 1.682e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-24-gd28b9ab1cd64) finalized