MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-24-gd28b9ab1cd64) initialized Starting run at 05:24:56 UTC on 2023-06-19. Successfully read inputs file ... Castro git describe: 23.06-30-g8698f7367 AMReX git describe: 23.06-24-gd28b9ab1c Microphysics git describe: 23.06-26-g1dd6fa69 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017310609 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361617279 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.392093031 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.354146393 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33357734 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.364760037 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341532257 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317988722 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316271647 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315497763 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315653028 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01038504 seconds Ending run at 05:25:00 UTC on 2023-06-19. Run time = 3.619198124 Run time without initialization = 3.431055634 Average number of zones advanced per microsecond: 0.764 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.617 ... 3.619 ... 3.619 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2991 2.3857 2.4623 68.03% Gravity::make_radial_gravity() 21 0.3213 0.3286 0.3427 9.47% check_for_negative_density() 10 0.03464 0.1121 0.2012 5.56% Castro::estTimeStep() 21 0.02246 0.07227 0.1199 3.31% Castro::initData() 1 0.0404 0.07943 0.1186 3.28% amrex::Copy() 193 0.06813 0.0797 0.08962 2.48% FabArray::setVal() 143 0.06587 0.07402 0.08458 2.34% FabArray::ParallelCopy_finish() 41 0.0331 0.05038 0.07122 1.97% Castro::reset_internal_energy(Fab) 1008 0.04826 0.05012 0.05181 1.43% Castro::normalize_species() 62 0.04114 0.04291 0.04815 1.33% FabArray::ParallelCopy_nowait() 41 0.03599 0.04194 0.04408 1.22% StateData::FillBoundary(geom) 41 0.03281 0.03746 0.04035 1.11% FillPatchIterator::Initialize 41 0.02878 0.03436 0.03666 1.01% Gravity::interpolate_monopole_grav() 21 0.02821 0.02872 0.02917 0.81% Castro::construct_new_gravity_source() 10 0.0231 0.02549 0.02873 0.79% Castro::initialize_do_advance() 10 0.01212 0.01853 0.0211 0.58% Castro::computeTemp() 63 0.01873 0.0198 0.02077 0.57% VisMF::Write(FabArray) 2 0.01351 0.01479 0.01811 0.50% Castro::initialize_advance() 10 0.01038 0.01297 0.01599 0.44% FabArray::Saxpy() 20 0.012 0.01307 0.01405 0.39% FabArray::setDomainBndry() 41 0.008752 0.01192 0.01327 0.37% MultiFab::contains_nan() 20 0.01111 0.01189 0.01275 0.35% Amr::writePlotFile() 2 0.006728 0.01024 0.01152 0.32% Castro::construct_old_gravity_source() 10 0.007252 0.0101 0.0109 0.30% Castro::initMFs() 1 0.006918 0.007463 0.008098 0.22% main() 1 0.00489 0.006174 0.006856 0.19% StateData::define() 4 0.005794 0.006219 0.006536 0.18% Castro::construct_new_source() 50 0.00581 0.006246 0.006534 0.18% Castro::enforce_min_density() 62 0.005914 0.006203 0.006395 0.18% Castro::swap_state_time_levels() 10 0.003466 0.004649 0.004878 0.13% Gravity::get_new_grav_vector() 11 0.00309 0.003893 0.004799 0.13% Amr::coarseTimeStep() 10 0.001727 0.002397 0.00296 0.08% Gravity::get_old_grav_vector() 10 0.001739 0.002104 0.002416 0.07% Castro::finalize_do_advance() 10 0.0005997 0.001575 0.001908 0.05% Castro::buildMetrics() 1 0.00166 0.001782 0.001878 0.05% Castro::expand_state() 10 0.0006782 0.0007408 0.000777 0.02% Amr::timeStep() 10 0.0001504 0.0002178 0.0004736 0.01% Amr::InitAmr() 1 0.0002827 0.0003156 0.0004014 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002789 0.0002933 0.0003197 0.01% Castro::do_old_sources() 10 0.0001424 0.0001747 0.0002021 0.01% Castro::clean_state() 62 0.0001437 0.000159 0.0001788 0.00% Castro::do_advance_ctu() 10 0.0001027 0.0001218 0.0001415 0.00% Castro::finalize_advance() 10 8.184e-05 0.0001081 0.000127 0.00% StateDataPhysBCFunct::() 41 8.03e-05 9.661e-05 0.0001228 0.00% DistributionMapping::LeastUsedCPUs() 1 6.278e-06 8.675e-05 0.000118 0.00% Castro::enforce_consistent_e() 1 8.368e-05 8.773e-05 9.394e-05 0.00% Castro::Castro() 1 5.975e-05 7.374e-05 9.26e-05 0.00% Castro::construct_old_source() 50 6.4e-05 7.438e-05 9.151e-05 0.00% FabArray::ParallelCopy() 41 6.772e-05 7.748e-05 8.675e-05 0.00% Amr::FinalizeInit() 1 4.546e-06 1.588e-05 8.526e-05 0.00% Castro::do_new_sources() 10 5.79e-05 6.646e-05 8.323e-05 0.00% FabArrayBase::getCPC() 41 4.366e-05 6.102e-05 8.039e-05 0.00% FillPatchSingleLevel 41 6.385e-05 7.078e-05 8.013e-05 0.00% Castro::advance() 10 3.737e-05 4.547e-05 6.664e-05 0.00% Castro::construct_new_gravity() 10 4.08e-05 4.674e-05 6.243e-05 0.00% Amr::writeSmallPlotFile() 1 2.696e-05 4.439e-05 6.24e-05 0.00% Castro::subcycle_advance_ctu() 10 4.223e-05 4.895e-05 6.056e-05 0.00% Castro::apply_source_to_state() 20 3.531e-05 4.73e-05 5.726e-05 0.00% Castro::construct_old_gravity() 10 3.951e-05 4.624e-05 5.049e-05 0.00% FabArrayBase::CPC::define() 2 1.906e-05 2.43e-05 3.189e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.873e-05 2.559e-05 3.111e-05 0.00% Castro::check_for_nan() 20 2.056e-05 2.294e-05 2.518e-05 0.00% Castro::enforce_speed_limit() 62 2.179e-05 2.37e-05 2.49e-05 0.00% Castro::computeNewDt() 9 7.661e-06 1.193e-05 2.107e-05 0.00% Amr::defBaseLevel() 1 1.226e-05 1.544e-05 1.936e-05 0.00% Amr::init() 1 1.555e-06 4.34e-06 1.869e-05 0.00% Gravity::swapTimeLevels() 10 1.225e-05 1.546e-05 1.789e-05 0.00% Castro::post_timestep() 10 1.312e-05 1.457e-05 1.574e-05 0.00% Gravity::set_mass_offset() 10 8.767e-06 1.156e-05 1.425e-05 0.00% Castro::FluxRegCrseInit 10 7.613e-06 9.479e-06 1.279e-05 0.00% Amr::initSubcycle() 1 8.677e-06 9.599e-06 1.023e-05 0.00% Castro::create_source_corrector() 10 8.096e-06 8.927e-06 9.867e-06 0.00% Castro::retry_advance_ctu() 10 6.743e-06 7.419e-06 9.26e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.887e-06 4.701e-06 6.596e-06 0.00% Castro::post_init() 1 3.137e-06 4.108e-06 5.24e-06 0.00% Castro::computeInitialDt() 2 3.652e-06 4.522e-06 5.103e-06 0.00% Amr::InitializeInit() 1 1.89e-06 2.509e-06 4.995e-06 0.00% Castro::post_regrid() 1 2.233e-06 3.2e-06 4.145e-06 0.00% Castro::FluxRegFineAdd() 10 1.74e-06 2.067e-06 2.701e-06 0.00% Amr::initialInit() 1 1.402e-06 1.716e-06 2.394e-06 0.00% DistributionMapping::Distribute() 1 8.66e-07 1.071e-06 1.342e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.617 3.619 3.619 100.00% Amr::coarseTimeStep() 10 3.414 3.414 3.414 94.33% Amr::timeStep() 10 3.401 3.402 3.402 94.00% Castro::advance() 10 3.385 3.385 3.386 93.56% Castro::subcycle_advance_ctu() 10 3.298 3.304 3.311 91.48% Castro::do_advance_ctu() 10 3.297 3.304 3.311 91.48% Castro::construct_ctu_hydro_source() 10 2.516 2.52 2.523 69.71% Gravity::make_radial_gravity() 21 0.339 0.3457 0.3575 9.88% Gravity::get_new_grav_vector() 11 0.2264 0.2281 0.2299 6.35% Castro::construct_old_gravity() 10 0.1993 0.2027 0.2125 5.87% Gravity::get_old_grav_vector() 10 0.1987 0.202 0.2118 5.85% Castro::construct_new_gravity() 10 0.202 0.2032 0.2045 5.65% check_for_negative_density() 10 0.03464 0.1121 0.2012 5.56% FillPatchIterator::Initialize 41 0.1613 0.1764 0.1881 5.20% Amr::init() 1 0.1876 0.1877 0.1877 5.19% Castro::initialize_do_advance() 10 0.1615 0.1753 0.1824 5.04% Amr::initialInit() 1 0.1698 0.17 0.1702 4.70% Amr::InitializeInit() 1 0.06092 0.1013 0.1415 3.91% Amr::defBaseLevel() 1 0.06092 0.1013 0.1415 3.91% FillPatchSingleLevel 41 0.1129 0.1301 0.1404 3.88% Castro::expand_state() 10 0.1104 0.119 0.1276 3.53% Castro::clean_state() 62 0.115 0.1185 0.1241 3.43% Castro::initData() 1 0.04452 0.0834 0.1224 3.38% Castro::estTimeStep() 21 0.02246 0.07227 0.1199 3.31% Amr::FinalizeInit() 1 0.02853 0.06874 0.1092 3.02% FabArray::ParallelCopy() 41 0.07467 0.09248 0.1074 2.97% Castro::do_old_sources() 10 0.09283 0.09634 0.1001 2.77% amrex::Copy() 193 0.06813 0.0797 0.08962 2.48% FabArray::setVal() 143 0.06587 0.07402 0.08458 2.34% Castro::initialize_advance() 10 0.07097 0.07799 0.0841 2.32% Castro::computeInitialDt() 2 0.002225 0.04243 0.08272 2.29% Castro::do_new_sources() 10 0.0601 0.06749 0.07679 2.12% Castro::computeTemp() 63 0.06773 0.07021 0.07286 2.01% FabArray::ParallelCopy_finish() 41 0.0331 0.05038 0.07122 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04854 0.05042 0.05209 1.44% Castro::reset_internal_energy(Fab) 1008 0.04826 0.05012 0.05181 1.43% Castro::normalize_species() 62 0.04114 0.04291 0.04815 1.33% FabArray::ParallelCopy_nowait() 41 0.0361 0.04203 0.04416 1.22% StateDataPhysBCFunct::() 41 0.03293 0.03756 0.04044 1.12% StateData::FillBoundary(geom) 41 0.03281 0.03746 0.04035 1.11% Castro::construct_new_source() 50 0.02925 0.03174 0.0352 0.97% Castro::finalize_do_advance() 10 0.01303 0.0228 0.03138 0.87% Gravity::interpolate_monopole_grav() 21 0.02821 0.02872 0.02917 0.81% Castro::construct_new_gravity_source() 10 0.0231 0.02549 0.02873 0.79% Amr::writePlotFile() 2 0.02792 0.0281 0.02837 0.78% Castro::post_init() 1 0.02567 0.02597 0.02612 0.72% VisMF::Write(FabArray) 2 0.01351 0.01479 0.01811 0.50% Castro::post_timestep() 10 0.01552 0.01603 0.01646 0.45% Castro::apply_source_to_state() 20 0.01203 0.01312 0.0141 0.39% FabArray::Saxpy() 20 0.012 0.01307 0.01405 0.39% FabArray::setDomainBndry() 41 0.008752 0.01192 0.01327 0.37% Castro::check_for_nan() 20 0.01113 0.01191 0.01277 0.35% MultiFab::contains_nan() 20 0.01111 0.01189 0.01275 0.35% Castro::Castro() 1 0.01051 0.01154 0.01243 0.34% Castro::construct_old_source() 50 0.007325 0.01017 0.01099 0.30% Castro::construct_old_gravity_source() 10 0.007252 0.0101 0.0109 0.30% Castro::computeNewDt() 9 0.00862 0.008632 0.008639 0.24% Castro::initMFs() 1 0.006918 0.007463 0.008098 0.22% AmrLevel::AmrLevel(dm) 1 0.005823 0.006245 0.006563 0.18% StateData::define() 4 0.005794 0.006219 0.006536 0.18% Castro::enforce_min_density() 62 0.005914 0.006203 0.006395 0.18% Castro::swap_state_time_levels() 10 0.003466 0.004649 0.004878 0.13% Castro::finalize_advance() 10 0.002961 0.003511 0.004078 0.11% Castro::buildMetrics() 1 0.001782 0.001918 0.002021 0.06% Castro::post_regrid() 1 0.001518 0.001589 0.001648 0.05% Amr::InitAmr() 1 0.0002918 0.0003252 0.0004101 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.103e-05 9.252e-05 0.0001246 0.00% DistributionMapping::LeastUsedCPUs() 1 6.278e-06 8.675e-05 0.000118 0.00% FabArrayBase::getCPC() 41 6.62e-05 8.532e-05 0.0001057 0.00% Castro::enforce_consistent_e() 1 8.368e-05 8.773e-05 9.394e-05 0.00% Amr::writeSmallPlotFile() 1 2.696e-05 4.439e-05 6.24e-05 0.00% FabArrayBase::CPC::define() 2 1.906e-05 2.43e-05 3.189e-05 0.00% Castro::enforce_speed_limit() 62 2.179e-05 2.37e-05 2.49e-05 0.00% Gravity::swapTimeLevels() 10 1.225e-05 1.546e-05 1.789e-05 0.00% Gravity::set_mass_offset() 10 8.767e-06 1.156e-05 1.425e-05 0.00% Castro::FluxRegCrseInit 10 7.613e-06 9.479e-06 1.279e-05 0.00% Amr::initSubcycle() 1 8.677e-06 9.599e-06 1.023e-05 0.00% Castro::create_source_corrector() 10 8.096e-06 8.927e-06 9.867e-06 0.00% Castro::retry_advance_ctu() 10 6.743e-06 7.419e-06 9.26e-06 0.00% Castro::FluxRegFineAdd() 10 1.74e-06 2.067e-06 2.701e-06 0.00% DistributionMapping::Distribute() 1 8.66e-07 1.071e-06 1.342e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-24-gd28b9ab1cd64) finalized