MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-24-gd28b9ab1cd64) initialized Starting run at 05:26:31 UTC on 2023-06-20. Successfully read inputs file ... Castro git describe: 23.06-35-g3ed8b7ef2 AMReX git describe: 23.06-24-gd28b9ab1c Microphysics git describe: 23.06-29-gde505749 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017284603 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370554168 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341830873 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.369304171 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328906042 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354121289 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.378827503 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31850024 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317133988 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312673825 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312339951 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010338623 seconds Ending run at 05:26:35 UTC on 2023-06-20. Run time = 3.616567851 Run time without initialization = 3.422112323 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.616 ... 3.616 ... 3.617 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2830 2.3729 2.4272 67.11% Gravity::make_radial_gravity() 21 0.3178 0.3257 0.3392 9.38% check_for_negative_density() 10 0.06601 0.1209 0.2137 5.91% Castro::estTimeStep() 21 0.02088 0.07846 0.1252 3.46% Castro::initData() 1 0.0386 0.07797 0.1237 3.42% FabArray::setVal() 143 0.06646 0.07651 0.08966 2.48% amrex::Copy() 193 0.06978 0.07858 0.08679 2.40% FabArray::ParallelCopy_finish() 41 0.03364 0.05336 0.06657 1.84% Castro::reset_internal_energy(Fab) 1008 0.04851 0.05053 0.05277 1.46% FabArray::ParallelCopy_nowait() 41 0.03617 0.04184 0.0442 1.22% Castro::normalize_species() 62 0.0411 0.04202 0.04316 1.19% StateData::FillBoundary(geom) 41 0.03275 0.03515 0.03777 1.04% FillPatchIterator::Initialize 41 0.02954 0.03433 0.03672 1.02% Castro::construct_new_gravity_source() 10 0.02297 0.02581 0.02955 0.82% Gravity::interpolate_monopole_grav() 21 0.02802 0.02827 0.02843 0.79% Castro::initialize_do_advance() 10 0.01296 0.01856 0.02297 0.64% Castro::computeTemp() 63 0.01823 0.01985 0.0208 0.58% VisMF::Write(FabArray) 2 0.0132 0.01398 0.01765 0.49% Castro::initialize_advance() 10 0.009723 0.01257 0.01581 0.44% FabArray::Saxpy() 20 0.01244 0.01297 0.01336 0.37% FabArray::setDomainBndry() 41 0.008737 0.01147 0.01256 0.35% Amr::writePlotFile() 2 0.007295 0.01098 0.01206 0.33% MultiFab::contains_nan() 20 0.01013 0.01079 0.01171 0.32% Castro::construct_old_gravity_source() 10 0.00694 0.009728 0.01045 0.29% Castro::initMFs() 1 0.007136 0.007438 0.008986 0.25% main() 1 0.005791 0.00623 0.006754 0.19% StateData::define() 4 0.005888 0.006105 0.006674 0.18% Castro::enforce_min_density() 62 0.00592 0.006213 0.006521 0.18% Castro::construct_new_source() 50 0.005591 0.006163 0.006413 0.18% Gravity::get_new_grav_vector() 11 0.002864 0.004208 0.006026 0.17% Castro::swap_state_time_levels() 10 0.003661 0.004903 0.005381 0.15% Amr::coarseTimeStep() 10 0.001337 0.002785 0.003813 0.11% Gravity::get_old_grav_vector() 10 0.001527 0.002023 0.00226 0.06% Castro::buildMetrics() 1 0.001669 0.001757 0.00194 0.05% Castro::finalize_do_advance() 10 0.0007855 0.001565 0.001904 0.05% Castro::expand_state() 10 0.0008354 0.0009185 0.0009951 0.03% Amr::InitAmr() 1 0.0002758 0.0003046 0.0004255 0.01% Amr::timeStep() 10 0.0001695 0.0002177 0.0003885 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002892 0.0003088 0.0003618 0.01% Castro::clean_state() 62 0.0001404 0.0001851 0.0002429 0.01% Castro::do_old_sources() 10 0.0001422 0.0001625 0.0001786 0.00% DistributionMapping::LeastUsedCPUs() 1 8.033e-06 0.0001266 0.0001547 0.00% Castro::do_advance_ctu() 10 9.059e-05 0.0001227 0.0001477 0.00% Castro::Castro() 1 6.116e-05 8.692e-05 0.0001365 0.00% StateDataPhysBCFunct::() 41 8.854e-05 0.0001007 0.0001283 0.00% Castro::finalize_advance() 10 8.408e-05 0.0001025 0.0001219 0.00% Castro::enforce_consistent_e() 1 8.189e-05 9.109e-05 0.0001137 0.00% FabArray::ParallelCopy() 41 6.812e-05 7.999e-05 9.456e-05 0.00% Castro::construct_old_source() 50 4.654e-05 6.815e-05 8.707e-05 0.00% Amr::FinalizeInit() 1 4.387e-06 1.618e-05 8.609e-05 0.00% FillPatchSingleLevel 41 6.612e-05 7.144e-05 7.841e-05 0.00% Castro::do_new_sources() 10 5.616e-05 6.528e-05 7.798e-05 0.00% Amr::writeSmallPlotFile() 1 2.547e-05 4.873e-05 6.676e-05 0.00% FabArrayBase::getCPC() 41 4.647e-05 5.784e-05 6.559e-05 0.00% Castro::subcycle_advance_ctu() 10 3.973e-05 5.053e-05 6.101e-05 0.00% Castro::construct_old_gravity() 10 3.868e-05 4.456e-05 5.36e-05 0.00% Castro::apply_source_to_state() 20 3.426e-05 4.329e-05 5.103e-05 0.00% Castro::construct_new_gravity() 10 4.013e-05 4.578e-05 4.997e-05 0.00% Castro::advance() 10 3.448e-05 3.924e-05 4.479e-05 0.00% Castro::enforce_speed_limit() 62 2.497e-05 2.815e-05 3.69e-05 0.00% Castro::check_for_nan() 20 2.148e-05 2.459e-05 3.172e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.468e-05 2.24e-05 3.027e-05 0.00% FabArrayBase::CPC::define() 2 2.102e-05 2.448e-05 2.958e-05 0.00% Amr::defBaseLevel() 1 1.289e-05 1.687e-05 2.191e-05 0.00% Gravity::swapTimeLevels() 10 1.075e-05 1.519e-05 1.933e-05 0.00% Castro::post_timestep() 10 1.172e-05 1.484e-05 1.715e-05 0.00% Gravity::set_mass_offset() 10 8.42e-06 1.038e-05 1.311e-05 0.00% Castro::computeNewDt() 9 8.426e-06 1.025e-05 1.169e-05 0.00% Castro::create_source_corrector() 10 7.454e-06 8.964e-06 1.149e-05 0.00% Amr::initSubcycle() 1 8.753e-06 9.491e-06 1.063e-05 0.00% Castro::FluxRegCrseInit 10 7.328e-06 8.569e-06 9.92e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.664e-06 5.848e-06 9.834e-06 0.00% Castro::retry_advance_ctu() 10 6.724e-06 7.472e-06 8.586e-06 0.00% Amr::init() 1 1.972e-06 2.933e-06 6.851e-06 0.00% Castro::computeInitialDt() 2 4.105e-06 5.012e-06 5.794e-06 0.00% Amr::InitializeInit() 1 2.129e-06 2.708e-06 5.568e-06 0.00% Castro::post_init() 1 2.973e-06 3.685e-06 5.231e-06 0.00% Castro::post_regrid() 1 1.653e-06 3.241e-06 4.864e-06 0.00% Amr::initialInit() 1 1.5e-06 2.018e-06 2.534e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.201e-06 2.375e-06 0.00% DistributionMapping::Distribute() 1 8.91e-07 1.059e-06 1.18e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.616 3.616 3.617 100.00% Amr::coarseTimeStep() 10 3.405 3.405 3.405 94.15% Amr::timeStep() 10 3.392 3.393 3.394 93.84% Castro::advance() 10 3.376 3.376 3.378 93.39% Castro::subcycle_advance_ctu() 10 3.284 3.293 3.302 91.29% Castro::do_advance_ctu() 10 3.284 3.293 3.302 91.29% Castro::construct_ctu_hydro_source() 10 2.513 2.517 2.521 69.70% Gravity::make_radial_gravity() 21 0.3335 0.3419 0.3545 9.80% Gravity::get_new_grav_vector() 11 0.2235 0.2273 0.2309 6.38% check_for_negative_density() 10 0.06601 0.1209 0.2137 5.91% Castro::construct_old_gravity() 10 0.1939 0.1972 0.2082 5.76% Gravity::get_old_grav_vector() 10 0.1933 0.1966 0.2077 5.74% Castro::construct_new_gravity() 10 0.1987 0.2015 0.2043 5.65% Amr::init() 1 0.1939 0.194 0.194 5.37% FillPatchIterator::Initialize 41 0.1585 0.1765 0.1914 5.29% Castro::initialize_do_advance() 10 0.1607 0.1776 0.1892 5.23% Amr::initialInit() 1 0.1762 0.1765 0.1767 4.88% Amr::InitializeInit() 1 0.06047 0.1001 0.147 4.06% Amr::defBaseLevel() 1 0.06047 0.1001 0.147 4.06% FillPatchSingleLevel 41 0.1137 0.1307 0.1422 3.93% Castro::expand_state() 10 0.1099 0.1217 0.1349 3.73% Castro::initData() 1 0.04276 0.08199 0.1273 3.52% Castro::estTimeStep() 21 0.02088 0.07846 0.1252 3.46% Castro::clean_state() 62 0.1135 0.1182 0.1227 3.39% Amr::FinalizeInit() 1 0.0295 0.07637 0.1162 3.21% FabArray::ParallelCopy() 41 0.07667 0.09536 0.1057 2.92% Castro::do_old_sources() 10 0.09143 0.09401 0.09662 2.67% FabArray::setVal() 143 0.06646 0.07651 0.08966 2.48% Castro::initialize_advance() 10 0.07126 0.07965 0.08907 2.46% Castro::computeInitialDt() 2 0.002216 0.04909 0.08873 2.45% amrex::Copy() 193 0.06978 0.07858 0.08679 2.40% Castro::do_new_sources() 10 0.05996 0.06721 0.07764 2.15% Castro::computeTemp() 63 0.06703 0.07069 0.07387 2.04% FabArray::ParallelCopy_finish() 41 0.03364 0.05336 0.06657 1.84% Castro::reset_internal_energy(MultiFab) 63 0.0488 0.05084 0.05308 1.47% Castro::reset_internal_energy(Fab) 1008 0.04851 0.05053 0.05277 1.46% FabArray::ParallelCopy_nowait() 41 0.03626 0.04192 0.04429 1.22% Castro::normalize_species() 62 0.0411 0.04202 0.04316 1.19% StateDataPhysBCFunct::() 41 0.03285 0.03525 0.03787 1.05% StateData::FillBoundary(geom) 41 0.03275 0.03515 0.03777 1.04% Castro::construct_new_source() 50 0.02914 0.03197 0.03596 0.99% Castro::finalize_do_advance() 10 0.01212 0.0225 0.0297 0.82% Castro::construct_new_gravity_source() 10 0.02297 0.02581 0.02955 0.82% Gravity::interpolate_monopole_grav() 21 0.02802 0.02827 0.02843 0.79% Amr::writePlotFile() 2 0.02779 0.02796 0.02828 0.78% Castro::post_init() 1 0.02661 0.02694 0.02711 0.75% VisMF::Write(FabArray) 2 0.0132 0.01398 0.01765 0.49% Castro::post_timestep() 10 0.01533 0.01588 0.0163 0.45% Castro::apply_source_to_state() 20 0.01248 0.01301 0.01341 0.37% FabArray::Saxpy() 20 0.01244 0.01297 0.01336 0.37% Castro::Castro() 1 0.01155 0.01184 0.01283 0.35% FabArray::setDomainBndry() 41 0.008737 0.01147 0.01256 0.35% Castro::check_for_nan() 20 0.01015 0.01082 0.01174 0.32% MultiFab::contains_nan() 20 0.01013 0.01079 0.01171 0.32% Castro::construct_old_source() 50 0.006986 0.009796 0.01053 0.29% Castro::construct_old_gravity_source() 10 0.00694 0.009728 0.01045 0.29% Castro::initMFs() 1 0.007136 0.007438 0.008986 0.25% Castro::computeNewDt() 9 0.008449 0.008455 0.008461 0.23% AmrLevel::AmrLevel(dm) 1 0.005915 0.006128 0.006697 0.19% StateData::define() 4 0.005888 0.006105 0.006674 0.18% Castro::enforce_min_density() 62 0.00592 0.006213 0.006521 0.18% Castro::swap_state_time_levels() 10 0.003661 0.004903 0.005381 0.15% Castro::finalize_advance() 10 0.003003 0.00382 0.004769 0.13% Castro::buildMetrics() 1 0.001815 0.001892 0.002104 0.06% Castro::post_regrid() 1 0.001524 0.001595 0.001667 0.05% Amr::InitAmr() 1 0.0002852 0.0003141 0.0004347 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.315e-05 0.0001335 0.0001629 0.00% DistributionMapping::LeastUsedCPUs() 1 8.033e-06 0.0001266 0.0001547 0.00% Castro::enforce_consistent_e() 1 8.189e-05 9.109e-05 0.0001137 0.00% FabArrayBase::getCPC() 41 6.844e-05 8.232e-05 9.475e-05 0.00% Amr::writeSmallPlotFile() 1 2.547e-05 4.873e-05 6.676e-05 0.00% Castro::enforce_speed_limit() 62 2.497e-05 2.815e-05 3.69e-05 0.00% FabArrayBase::CPC::define() 2 2.102e-05 2.448e-05 2.958e-05 0.00% Gravity::swapTimeLevels() 10 1.075e-05 1.519e-05 1.933e-05 0.00% Gravity::set_mass_offset() 10 8.42e-06 1.038e-05 1.311e-05 0.00% Castro::create_source_corrector() 10 7.454e-06 8.964e-06 1.149e-05 0.00% Amr::initSubcycle() 1 8.753e-06 9.491e-06 1.063e-05 0.00% Castro::FluxRegCrseInit 10 7.328e-06 8.569e-06 9.92e-06 0.00% Castro::retry_advance_ctu() 10 6.724e-06 7.472e-06 8.586e-06 0.00% Castro::FluxRegFineAdd() 10 1.908e-06 2.201e-06 2.375e-06 0.00% DistributionMapping::Distribute() 1 8.91e-07 1.059e-06 1.18e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-24-gd28b9ab1cd64) finalized