MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-25-g239d4d899334) initialized Starting run at 05:29:08 UTC on 2023-06-21. Successfully read inputs file ... Castro git describe: 23.06-36-g90afb40ca AMReX git describe: 23.06-25-g239d4d899 Microphysics git describe: 23.06-29-gde505749 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015952095 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360431962 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353549021 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339152882 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33413505 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360397981 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346174721 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313208069 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312084507 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313041429 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313637945 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010627537 seconds Ending run at 05:29:12 UTC on 2023-06-21. Run time = 3.567296702 Run time without initialization = 3.364372472 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.566 ... 3.567 ... 3.567 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2603 2.3573 2.3961 67.17% Gravity::make_radial_gravity() 21 0.3155 0.3334 0.3528 9.89% check_for_negative_density() 10 0.01971 0.06275 0.164 4.60% Castro::initData() 1 0.04042 0.08356 0.1333 3.74% Castro::estTimeStep() 21 0.03809 0.08285 0.1155 3.24% FabArray::setVal() 143 0.06425 0.07549 0.08993 2.52% amrex::Copy() 193 0.06344 0.07778 0.08683 2.43% FabArray::ParallelCopy_finish() 41 0.03685 0.05641 0.0753 2.11% Castro::reset_internal_energy(Fab) 1008 0.04823 0.05046 0.05282 1.48% FabArray::ParallelCopy_nowait() 41 0.03463 0.042 0.04421 1.24% Castro::normalize_species() 62 0.04126 0.04216 0.04295 1.20% StateData::FillBoundary(geom) 41 0.03303 0.03746 0.0415 1.16% FillPatchIterator::Initialize 41 0.0292 0.03499 0.03721 1.04% Castro::construct_new_gravity_source() 10 0.02255 0.02584 0.03115 0.87% Gravity::interpolate_monopole_grav() 21 0.02797 0.02832 0.02871 0.80% Castro::initialize_do_advance() 10 0.0121 0.01874 0.02305 0.65% Castro::computeTemp() 63 0.01859 0.02006 0.02232 0.63% VisMF::Write(FabArray) 2 0.01358 0.01421 0.01688 0.47% Castro::initialize_advance() 10 0.009649 0.01266 0.01576 0.44% MultiFab::contains_nan() 20 0.01067 0.01184 0.01371 0.38% FabArray::setDomainBndry() 41 0.00885 0.01198 0.01335 0.37% FabArray::Saxpy() 20 0.01084 0.01258 0.01333 0.37% Amr::writePlotFile() 2 0.00706 0.009927 0.01101 0.31% Castro::construct_old_gravity_source() 10 0.007184 0.009586 0.01035 0.29% Castro::initMFs() 1 0.006917 0.008059 0.01029 0.29% StateData::define() 4 0.005773 0.006657 0.008513 0.24% main() 1 0.005239 0.006257 0.007092 0.20% Castro::enforce_min_density() 62 0.005897 0.006132 0.00647 0.18% Castro::construct_new_source() 50 0.005575 0.006126 0.006364 0.18% Gravity::get_new_grav_vector() 11 0.003152 0.00417 0.006139 0.17% Castro::swap_state_time_levels() 10 0.003364 0.004415 0.004773 0.13% Amr::coarseTimeStep() 10 0.001399 0.002875 0.00423 0.12% Castro::buildMetrics() 1 0.001614 0.001886 0.002428 0.07% Gravity::get_old_grav_vector() 10 0.001553 0.002076 0.002422 0.07% Castro::finalize_do_advance() 10 0.0006348 0.001619 0.002025 0.06% Castro::expand_state() 10 0.0006821 0.0009732 0.001155 0.03% Amr::InitAmr() 1 0.000276 0.000354 0.0004937 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002796 0.0003444 0.0004712 0.01% Amr::timeStep() 10 0.000153 0.0002241 0.0004101 0.01% DistributionMapping::LeastUsedCPUs() 1 6.512e-06 0.0001739 0.0002627 0.01% Castro::do_old_sources() 10 0.0001505 0.0001836 0.0002327 0.01% Castro::clean_state() 62 0.0001551 0.0001812 0.000221 0.01% Castro::do_advance_ctu() 10 0.0001005 0.000134 0.0001816 0.01% StateDataPhysBCFunct::() 41 9.866e-05 0.0001143 0.0001472 0.00% Castro::finalize_advance() 10 9.506e-05 0.0001079 0.0001228 0.00% FillPatchSingleLevel 41 7.121e-05 7.883e-05 9.538e-05 0.00% FabArray::ParallelCopy() 41 7.245e-05 8.318e-05 9.316e-05 0.00% Castro::enforce_consistent_e() 1 7.913e-05 8.574e-05 9.196e-05 0.00% Amr::FinalizeInit() 1 4.268e-06 1.57e-05 9.115e-05 0.00% Castro::construct_old_source() 50 5.987e-05 7.262e-05 8.818e-05 0.00% FabArrayBase::getCPC() 41 4.811e-05 6.111e-05 8.458e-05 0.00% Castro::Castro() 1 5.534e-05 6.479e-05 8.399e-05 0.00% Castro::do_new_sources() 10 5.588e-05 6.848e-05 7.843e-05 0.00% Castro::construct_new_gravity() 10 3.932e-05 5.133e-05 7.463e-05 0.00% Amr::writeSmallPlotFile() 1 3.53e-05 5.446e-05 6.669e-05 0.00% Castro::construct_old_gravity() 10 3.746e-05 4.587e-05 6.066e-05 0.00% Castro::apply_source_to_state() 20 4.218e-05 4.902e-05 5.701e-05 0.00% Castro::subcycle_advance_ctu() 10 4.669e-05 5.092e-05 5.596e-05 0.00% Castro::advance() 10 3.794e-05 4.21e-05 4.704e-05 0.00% Castro::check_for_nan() 20 2.12e-05 2.6e-05 4.118e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.83e-05 2.624e-05 3.291e-05 0.00% Castro::enforce_speed_limit() 62 2.336e-05 2.654e-05 3.183e-05 0.00% FabArrayBase::CPC::define() 2 2.291e-05 2.602e-05 3.175e-05 0.00% Gravity::swapTimeLevels() 10 1.237e-05 1.509e-05 1.893e-05 0.00% Castro::post_timestep() 10 1.304e-05 1.563e-05 1.852e-05 0.00% Amr::defBaseLevel() 1 1.202e-05 1.363e-05 1.727e-05 0.00% Amr::initSubcycle() 1 8.41e-06 1.061e-05 1.578e-05 0.00% Castro::computeNewDt() 9 9.269e-06 1.15e-05 1.48e-05 0.00% Gravity::set_mass_offset() 10 8.632e-06 1.119e-05 1.387e-05 0.00% Castro::post_init() 1 2.728e-06 5.726e-06 1.245e-05 0.00% Castro::create_source_corrector() 10 7.572e-06 9.297e-06 1.096e-05 0.00% Castro::FluxRegCrseInit 10 7.653e-06 8.52e-06 1.007e-05 0.00% Castro::retry_advance_ctu() 10 6.374e-06 7.385e-06 8.809e-06 0.00% Amr::init() 1 1.968e-06 4.298e-06 8.208e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.734e-06 4.84e-06 5.699e-06 0.00% Castro::computeInitialDt() 2 3.757e-06 4.126e-06 4.693e-06 0.00% Amr::InitializeInit() 1 1.872e-06 2.496e-06 4.674e-06 0.00% Castro::post_regrid() 1 1.74e-06 2.983e-06 3.679e-06 0.00% Castro::FluxRegFineAdd() 10 2.07e-06 2.35e-06 3.044e-06 0.00% Amr::initialInit() 1 1.374e-06 1.819e-06 2.269e-06 0.00% DistributionMapping::Distribute() 1 9.23e-07 1.021e-06 1.272e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.565 3.567 3.567 100.00% Amr::coarseTimeStep() 10 3.347 3.347 3.347 93.81% Amr::timeStep() 10 3.333 3.334 3.336 93.50% Castro::advance() 10 3.317 3.318 3.319 93.03% Castro::subcycle_advance_ctu() 10 3.224 3.234 3.244 90.92% Castro::do_advance_ctu() 10 3.224 3.234 3.243 90.92% Castro::construct_ctu_hydro_source() 10 2.44 2.444 2.448 68.63% Gravity::make_radial_gravity() 21 0.331 0.3497 0.3662 10.27% Gravity::get_new_grav_vector() 11 0.2292 0.2333 0.2369 6.64% Castro::construct_old_gravity() 10 0.1897 0.2012 0.2149 6.02% Gravity::get_old_grav_vector() 10 0.1891 0.2006 0.2143 6.01% Castro::construct_new_gravity() 10 0.2027 0.2061 0.2093 5.87% Amr::init() 1 0.2023 0.2024 0.2025 5.68% FillPatchIterator::Initialize 41 0.1636 0.1832 0.1982 5.56% Castro::initialize_do_advance() 10 0.1592 0.1802 0.1918 5.38% Amr::initialInit() 1 0.1861 0.1862 0.1863 5.22% check_for_negative_density() 10 0.01971 0.06275 0.164 4.60% Amr::InitializeInit() 1 0.06084 0.1061 0.1553 4.35% Amr::defBaseLevel() 1 0.06083 0.1061 0.1553 4.35% FillPatchSingleLevel 41 0.1165 0.1362 0.148 4.15% Castro::expand_state() 10 0.1105 0.1243 0.1374 3.85% Castro::initData() 1 0.0443 0.08736 0.1369 3.84% Amr::FinalizeInit() 1 0.03088 0.08013 0.1254 3.52% Castro::clean_state() 62 0.115 0.1184 0.1227 3.44% Castro::estTimeStep() 21 0.03809 0.08285 0.1155 3.24% FabArray::ParallelCopy() 41 0.07962 0.09858 0.1101 3.09% Castro::do_old_sources() 10 0.08976 0.09507 0.09895 2.77% Castro::computeInitialDt() 2 0.002019 0.05124 0.09641 2.70% FabArray::setVal() 143 0.06425 0.07549 0.08993 2.52% Castro::initialize_advance() 10 0.07042 0.07944 0.08971 2.51% amrex::Copy() 193 0.06344 0.07778 0.08683 2.43% Castro::do_new_sources() 10 0.05962 0.0673 0.07954 2.23% Castro::computeTemp() 63 0.06762 0.07086 0.07551 2.12% FabArray::ParallelCopy_finish() 41 0.03685 0.05641 0.0753 2.11% Castro::reset_internal_energy(MultiFab) 63 0.04851 0.0508 0.05319 1.49% Castro::reset_internal_energy(Fab) 1008 0.04823 0.05046 0.05282 1.48% FabArray::ParallelCopy_nowait() 41 0.03474 0.04209 0.0443 1.24% Castro::normalize_species() 62 0.04126 0.04216 0.04295 1.20% StateDataPhysBCFunct::() 41 0.03318 0.03758 0.04161 1.17% StateData::FillBoundary(geom) 41 0.03303 0.03746 0.0415 1.16% Castro::construct_new_source() 50 0.02866 0.03197 0.03728 1.04% Castro::finalize_do_advance() 10 0.01225 0.02454 0.03232 0.91% Castro::construct_new_gravity_source() 10 0.02255 0.02584 0.03115 0.87% Gravity::interpolate_monopole_grav() 21 0.02797 0.02832 0.02871 0.80% Castro::post_init() 1 0.02812 0.02831 0.02844 0.80% Amr::writePlotFile() 2 0.02679 0.02693 0.0271 0.76% VisMF::Write(FabArray) 2 0.01358 0.01421 0.01688 0.47% Castro::post_timestep() 10 0.01555 0.01611 0.01671 0.47% Castro::Castro() 1 0.01059 0.01183 0.01453 0.41% Castro::check_for_nan() 20 0.01069 0.01187 0.01374 0.39% MultiFab::contains_nan() 20 0.01067 0.01184 0.01371 0.38% Castro::apply_source_to_state() 20 0.01089 0.01263 0.01338 0.37% FabArray::setDomainBndry() 41 0.00885 0.01198 0.01335 0.37% FabArray::Saxpy() 20 0.01084 0.01258 0.01333 0.37% Castro::construct_old_source() 50 0.007259 0.009658 0.01044 0.29% Castro::construct_old_gravity_source() 10 0.007184 0.009586 0.01035 0.29% Castro::initMFs() 1 0.006917 0.008059 0.01029 0.29% Castro::computeNewDt() 9 0.0087 0.008708 0.008719 0.24% AmrLevel::AmrLevel(dm) 1 0.005792 0.006683 0.008544 0.24% StateData::define() 4 0.005773 0.006657 0.008513 0.24% Castro::enforce_min_density() 62 0.005897 0.006132 0.00647 0.18% Castro::swap_state_time_levels() 10 0.003364 0.004415 0.004773 0.13% Castro::finalize_advance() 10 0.002914 0.003762 0.004639 0.13% Castro::buildMetrics() 1 0.001734 0.002032 0.002642 0.07% Castro::post_regrid() 1 0.001525 0.001634 0.0019 0.05% Amr::InitAmr() 1 0.0002844 0.0003646 0.0005077 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.18e-05 0.0001798 0.0002692 0.01% DistributionMapping::LeastUsedCPUs() 1 6.512e-06 0.0001739 0.0002627 0.01% FabArrayBase::getCPC() 41 7.828e-05 8.713e-05 0.0001104 0.00% Castro::enforce_consistent_e() 1 7.913e-05 8.574e-05 9.196e-05 0.00% Amr::writeSmallPlotFile() 1 3.53e-05 5.446e-05 6.669e-05 0.00% Castro::enforce_speed_limit() 62 2.336e-05 2.654e-05 3.183e-05 0.00% FabArrayBase::CPC::define() 2 2.291e-05 2.602e-05 3.175e-05 0.00% Gravity::swapTimeLevels() 10 1.237e-05 1.509e-05 1.893e-05 0.00% Amr::initSubcycle() 1 8.41e-06 1.061e-05 1.578e-05 0.00% Gravity::set_mass_offset() 10 8.632e-06 1.119e-05 1.387e-05 0.00% Castro::create_source_corrector() 10 7.572e-06 9.297e-06 1.096e-05 0.00% Castro::FluxRegCrseInit 10 7.653e-06 8.52e-06 1.007e-05 0.00% Castro::retry_advance_ctu() 10 6.374e-06 7.385e-06 8.809e-06 0.00% Castro::FluxRegFineAdd() 10 2.07e-06 2.35e-06 3.044e-06 0.00% DistributionMapping::Distribute() 1 9.23e-07 1.021e-06 1.272e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 37 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-25-g239d4d899334) finalized