MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-25-g239d4d899334) initialized Starting run at 05:20:36 UTC on 2023-06-22. Successfully read inputs file ... Castro git describe: 23.06-36-g90afb40ca AMReX git describe: 23.06-25-g239d4d899 Microphysics git describe: 23.06-30-g70e08b65 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015529348 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368941181 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352872771 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.362394708 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.346281529 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.363441726 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.351533464 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.32136965 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.322227304 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.321260588 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.322268337 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010112869 seconds Ending run at 05:20:40 UTC on 2023-06-22. Run time = 3.650924132 Run time without initialization = 3.450069475 Average number of zones advanced per microsecond: 0.760 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.649 ... 3.65 ... 3.651 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3180 2.4025 2.4767 67.84% Gravity::make_radial_gravity() 21 0.3258 0.3346 0.3503 9.60% check_for_negative_density() 10 0.03929 0.1139 0.2014 5.52% Castro::estTimeStep() 21 0.0371 0.08303 0.1348 3.69% Castro::initData() 1 0.03897 0.08237 0.1298 3.56% FabArray::ParallelCopy_finish() 41 0.03328 0.05318 0.09405 2.58% amrex::Copy() 193 0.06323 0.07893 0.08753 2.40% FabArray::setVal() 143 0.06064 0.06994 0.08126 2.23% Castro::reset_internal_energy(Fab) 1008 0.04803 0.05013 0.05224 1.43% FabArray::ParallelCopy_nowait() 41 0.03581 0.04217 0.04435 1.21% Castro::normalize_species() 62 0.04119 0.04225 0.04345 1.19% StateData::FillBoundary(geom) 41 0.03612 0.03791 0.04004 1.10% FillPatchIterator::Initialize 41 0.02844 0.03461 0.03688 1.01% Gravity::interpolate_monopole_grav() 21 0.02841 0.02896 0.02955 0.81% Castro::construct_new_gravity_source() 10 0.02289 0.02532 0.02891 0.79% Castro::initialize_do_advance() 10 0.01206 0.01843 0.02143 0.59% Castro::computeTemp() 63 0.01808 0.01964 0.02029 0.56% VisMF::Write(FabArray) 2 0.01297 0.01383 0.01639 0.45% Castro::initialize_advance() 10 0.004033 0.01028 0.0142 0.39% FabArray::setDomainBndry() 41 0.008795 0.012 0.01353 0.37% FabArray::Saxpy() 20 0.01067 0.01262 0.01338 0.37% MultiFab::contains_nan() 20 0.01073 0.01156 0.0124 0.34% Amr::writePlotFile() 2 0.006733 0.009591 0.01147 0.31% Castro::initMFs() 1 0.006818 0.007942 0.01068 0.29% Castro::construct_old_gravity_source() 10 0.00709 0.009681 0.01052 0.29% StateData::define() 4 0.0056 0.006361 0.008206 0.22% main() 1 0.004948 0.005885 0.006617 0.18% Castro::enforce_min_density() 62 0.00577 0.006155 0.006482 0.18% Castro::construct_new_source() 50 0.005753 0.006212 0.006472 0.18% Gravity::get_new_grav_vector() 11 0.003052 0.004261 0.006104 0.17% Castro::swap_state_time_levels() 10 0.003328 0.00435 0.004703 0.13% Amr::coarseTimeStep() 10 0.001473 0.002477 0.003805 0.10% Castro::buildMetrics() 1 0.001574 0.001829 0.002405 0.07% Gravity::get_old_grav_vector() 10 0.001727 0.002147 0.002326 0.06% Castro::finalize_do_advance() 10 0.0005826 0.001525 0.001861 0.05% Castro::expand_state() 10 0.0006125 0.0007899 0.0009894 0.03% Amr::InitAmr() 1 0.0002496 0.0003349 0.0004717 0.01% Amr::timeStep() 10 0.0001561 0.0002201 0.0004245 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002784 0.0003043 0.0003538 0.01% DistributionMapping::LeastUsedCPUs() 1 6.006e-06 0.0001613 0.0002567 0.01% Castro::do_old_sources() 10 0.0001774 0.0001889 0.0002002 0.01% Castro::clean_state() 62 0.0001464 0.0001649 0.0001929 0.01% Castro::do_advance_ctu() 10 0.0001046 0.0001224 0.0001442 0.00% Castro::finalize_advance() 10 9.822e-05 0.0001134 0.0001336 0.00% StateDataPhysBCFunct::() 41 8.832e-05 0.0001059 0.0001236 0.00% Castro::enforce_consistent_e() 1 7.72e-05 8.995e-05 0.0001072 0.00% FillPatchSingleLevel 41 7.138e-05 8.042e-05 9.218e-05 0.00% Castro::construct_old_source() 50 5.619e-05 7.31e-05 9.131e-05 0.00% FabArray::ParallelCopy() 41 7.072e-05 8.193e-05 8.734e-05 0.00% Amr::FinalizeInit() 1 3.657e-06 1.505e-05 8.645e-05 0.00% Castro::Castro() 1 5.998e-05 7.524e-05 8.221e-05 0.00% Castro::do_new_sources() 10 5.903e-05 6.772e-05 7.918e-05 0.00% FabArrayBase::getCPC() 41 4.939e-05 6.079e-05 7.154e-05 0.00% Amr::writeSmallPlotFile() 1 2.896e-05 4.564e-05 6.589e-05 0.00% Castro::advance() 10 3.524e-05 4.332e-05 6.556e-05 0.00% Castro::construct_new_gravity() 10 3.576e-05 4.549e-05 5.84e-05 0.00% Castro::construct_old_gravity() 10 4.041e-05 4.523e-05 5.46e-05 0.00% Castro::subcycle_advance_ctu() 10 4.19e-05 4.995e-05 5.429e-05 0.00% Castro::apply_source_to_state() 20 4.526e-05 4.919e-05 5.427e-05 0.00% FabArrayBase::CPC::define() 2 2.006e-05 2.554e-05 4.031e-05 0.00% Castro::enforce_speed_limit() 62 2.275e-05 2.788e-05 3.831e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.188e-05 1.838e-05 2.847e-05 0.00% Castro::check_for_nan() 20 2.116e-05 2.306e-05 2.466e-05 0.00% Amr::defBaseLevel() 1 1.152e-05 1.679e-05 2.159e-05 0.00% Gravity::swapTimeLevels() 10 1.094e-05 1.472e-05 2.072e-05 0.00% Castro::post_timestep() 10 1.434e-05 1.575e-05 1.777e-05 0.00% Gravity::set_mass_offset() 10 8.776e-06 1.156e-05 1.469e-05 0.00% Amr::initSubcycle() 1 8.054e-06 1.004e-05 1.409e-05 0.00% Castro::computeNewDt() 9 8.106e-06 1.088e-05 1.302e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.443e-06 6.067e-06 1.169e-05 0.00% Castro::FluxRegCrseInit 10 7.268e-06 8.661e-06 1.005e-05 0.00% Castro::create_source_corrector() 10 7.13e-06 8.328e-06 9.37e-06 0.00% Castro::retry_advance_ctu() 10 6.127e-06 6.956e-06 8.781e-06 0.00% Amr::init() 1 1.511e-06 2.888e-06 7.295e-06 0.00% Castro::post_regrid() 1 2.005e-06 3.327e-06 6.777e-06 0.00% Castro::computeInitialDt() 2 3.382e-06 4.015e-06 5.422e-06 0.00% Amr::InitializeInit() 1 1.86e-06 2.457e-06 4.573e-06 0.00% Castro::post_init() 1 2.82e-06 3.523e-06 4.411e-06 0.00% Castro::FluxRegFineAdd() 10 1.813e-06 2.132e-06 2.646e-06 0.00% Amr::initialInit() 1 1.245e-06 1.638e-06 2.031e-06 0.00% DistributionMapping::Distribute() 1 7.93e-07 9.494e-07 1.156e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.649 3.65 3.651 100.00% Amr::coarseTimeStep() 10 3.433 3.433 3.433 94.04% Amr::timeStep() 10 3.42 3.421 3.422 93.74% Castro::advance() 10 3.404 3.405 3.406 93.28% Castro::subcycle_advance_ctu() 10 3.322 3.33 3.342 91.55% Castro::do_advance_ctu() 10 3.322 3.33 3.342 91.55% Castro::construct_ctu_hydro_source() 10 2.535 2.538 2.541 69.61% Gravity::make_radial_gravity() 21 0.3433 0.3514 0.3633 9.95% Gravity::get_new_grav_vector() 11 0.2271 0.2292 0.2311 6.33% Castro::construct_old_gravity() 10 0.203 0.2076 0.2174 5.96% Gravity::get_old_grav_vector() 10 0.2024 0.207 0.2168 5.94% Castro::construct_new_gravity() 10 0.2037 0.2052 0.2062 5.65% FillPatchIterator::Initialize 41 0.1616 0.1802 0.2048 5.61% check_for_negative_density() 10 0.03929 0.1139 0.2014 5.52% Amr::init() 1 0.2002 0.2004 0.2005 5.49% Amr::initialInit() 1 0.1844 0.1845 0.1848 5.06% Castro::initialize_do_advance() 10 0.1655 0.1779 0.184 5.04% FillPatchSingleLevel 41 0.1125 0.1336 0.1676 4.59% Amr::InitializeInit() 1 0.05981 0.1049 0.1566 4.29% Amr::defBaseLevel() 1 0.05981 0.1049 0.1566 4.29% Castro::estTimeStep() 21 0.0371 0.08303 0.1348 3.69% Castro::initData() 1 0.04299 0.08632 0.1335 3.66% Castro::expand_state() 10 0.1064 0.1218 0.1322 3.62% FabArray::ParallelCopy() 41 0.07547 0.09552 0.1301 3.56% Amr::FinalizeInit() 1 0.02774 0.07961 0.1246 3.41% Castro::clean_state() 62 0.1134 0.1177 0.1214 3.32% Castro::do_old_sources() 10 0.09353 0.09639 0.09962 2.73% Castro::computeInitialDt() 2 0.002002 0.05385 0.09907 2.71% FabArray::ParallelCopy_finish() 41 0.03328 0.05318 0.09405 2.58% amrex::Copy() 193 0.06323 0.07893 0.08753 2.40% FabArray::setVal() 143 0.06064 0.06994 0.08126 2.23% Castro::initialize_advance() 10 0.05815 0.07107 0.07952 2.18% Castro::do_new_sources() 10 0.06056 0.06684 0.07597 2.08% Castro::computeTemp() 63 0.0664 0.07007 0.07255 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04832 0.05043 0.05256 1.44% Castro::reset_internal_energy(Fab) 1008 0.04803 0.05013 0.05224 1.43% FabArray::ParallelCopy_nowait() 41 0.03592 0.04225 0.04443 1.22% Castro::normalize_species() 62 0.04119 0.04225 0.04345 1.19% StateDataPhysBCFunct::() 41 0.03623 0.03801 0.04016 1.10% StateData::FillBoundary(geom) 41 0.03612 0.03791 0.04004 1.10% Castro::construct_new_source() 50 0.02914 0.03153 0.03514 0.96% Gravity::interpolate_monopole_grav() 21 0.02841 0.02896 0.02955 0.81% Castro::construct_new_gravity_source() 10 0.02289 0.02532 0.02891 0.79% Castro::finalize_do_advance() 10 0.01297 0.02214 0.02857 0.78% Amr::writePlotFile() 2 0.02589 0.02604 0.02626 0.72% Castro::post_init() 1 0.02488 0.02518 0.0254 0.70% Castro::post_timestep() 10 0.01537 0.01599 0.01649 0.45% VisMF::Write(FabArray) 2 0.01297 0.01383 0.01639 0.45% Castro::Castro() 1 0.0109 0.01204 0.01496 0.41% FabArray::setDomainBndry() 41 0.008795 0.012 0.01353 0.37% Castro::apply_source_to_state() 20 0.01072 0.01267 0.01343 0.37% FabArray::Saxpy() 20 0.01067 0.01262 0.01338 0.37% Castro::check_for_nan() 20 0.01076 0.01159 0.01243 0.34% MultiFab::contains_nan() 20 0.01073 0.01156 0.0124 0.34% Castro::initMFs() 1 0.006818 0.007942 0.01068 0.29% Castro::construct_old_source() 50 0.007146 0.009754 0.0106 0.29% Castro::construct_old_gravity_source() 10 0.00709 0.009681 0.01052 0.29% Castro::computeNewDt() 9 0.008558 0.00857 0.008581 0.24% AmrLevel::AmrLevel(dm) 1 0.005612 0.006379 0.008234 0.23% StateData::define() 4 0.0056 0.006361 0.008206 0.22% Castro::enforce_min_density() 62 0.00577 0.006155 0.006482 0.18% Castro::swap_state_time_levels() 10 0.003328 0.00435 0.004703 0.13% Castro::finalize_advance() 10 0.002963 0.003488 0.003935 0.11% Castro::buildMetrics() 1 0.001687 0.001973 0.002639 0.07% Castro::post_regrid() 1 0.001542 0.001613 0.001789 0.05% Amr::InitAmr() 1 0.0002586 0.000345 0.000485 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.078e-05 0.0001683 0.0002635 0.01% DistributionMapping::LeastUsedCPUs() 1 6.006e-06 0.0001613 0.0002567 0.01% FabArrayBase::getCPC() 41 7.082e-05 8.633e-05 0.0001118 0.00% Castro::enforce_consistent_e() 1 7.72e-05 8.995e-05 0.0001072 0.00% Amr::writeSmallPlotFile() 1 2.896e-05 4.564e-05 6.589e-05 0.00% FabArrayBase::CPC::define() 2 2.006e-05 2.554e-05 4.031e-05 0.00% Castro::enforce_speed_limit() 62 2.275e-05 2.788e-05 3.831e-05 0.00% Gravity::swapTimeLevels() 10 1.094e-05 1.472e-05 2.072e-05 0.00% Gravity::set_mass_offset() 10 8.776e-06 1.156e-05 1.469e-05 0.00% Amr::initSubcycle() 1 8.054e-06 1.004e-05 1.409e-05 0.00% Castro::FluxRegCrseInit 10 7.268e-06 8.661e-06 1.005e-05 0.00% Castro::create_source_corrector() 10 7.13e-06 8.328e-06 9.37e-06 0.00% Castro::retry_advance_ctu() 10 6.127e-06 6.956e-06 8.781e-06 0.00% Castro::FluxRegFineAdd() 10 1.813e-06 2.132e-06 2.646e-06 0.00% DistributionMapping::Distribute() 1 7.93e-07 9.494e-07 1.156e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 37 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-25-g239d4d899334) finalized