MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.06-25-g239d4d899334) initialized Starting run at 05:20:58 UTC on 2023-06-23. Successfully read inputs file ... Castro git describe: 23.06-36-g90afb40ca AMReX git describe: 23.06-25-g239d4d899 Microphysics git describe: 23.06-31-ga39c4ed5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016329771 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369559474 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.368014665 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338395191 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.338903346 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.372301755 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346184672 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317384171 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.316594145 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317474169 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.319749925 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010798369 seconds Ending run at 05:21:02 UTC on 2023-06-23. Run time = 3.613914063 Run time without initialization = 3.422467844 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.614 ... 3.614 ... 3.614 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3617 2.3918 2.4471 67.71% Gravity::make_radial_gravity() 21 0.3177 0.3253 0.3397 9.40% check_for_negative_density() 10 0.03834 0.09718 0.1287 3.56% Castro::initData() 1 0.0404 0.08437 0.1233 3.41% Castro::estTimeStep() 21 0.03961 0.07139 0.1093 3.02% FabArray::setVal() 143 0.06466 0.07435 0.09026 2.50% amrex::Copy() 193 0.06708 0.07836 0.08681 2.40% FabArray::ParallelCopy_finish() 41 0.03793 0.05591 0.07617 2.11% Castro::reset_internal_energy(Fab) 1008 0.04825 0.05031 0.05271 1.46% FabArray::ParallelCopy_nowait() 41 0.03587 0.04173 0.04347 1.20% Castro::normalize_species() 62 0.04155 0.04203 0.04267 1.18% StateData::FillBoundary(geom) 41 0.03413 0.03701 0.03913 1.08% FillPatchIterator::Initialize 41 0.03075 0.03404 0.03592 0.99% Castro::construct_new_gravity_source() 10 0.02281 0.0255 0.02966 0.82% Gravity::interpolate_monopole_grav() 21 0.02826 0.02854 0.02897 0.80% Castro::initialize_do_advance() 10 0.01256 0.01838 0.02176 0.60% Castro::computeTemp() 63 0.01961 0.02001 0.02079 0.58% VisMF::Write(FabArray) 2 0.01389 0.01466 0.01768 0.49% Castro::initialize_advance() 10 0.009774 0.01294 0.01606 0.44% FabArray::Saxpy() 20 0.0107 0.01293 0.0136 0.38% FabArray::setDomainBndry() 41 0.008957 0.01136 0.01286 0.36% MultiFab::contains_nan() 20 0.01103 0.01168 0.01261 0.35% Amr::writePlotFile() 2 0.006874 0.01015 0.0118 0.33% Castro::initMFs() 1 0.006972 0.008239 0.01056 0.29% Castro::construct_old_gravity_source() 10 0.007106 0.009685 0.01031 0.29% StateData::define() 4 0.005758 0.00663 0.008334 0.23% Castro::construct_new_source() 50 0.005796 0.006361 0.006991 0.19% Castro::enforce_min_density() 62 0.005887 0.006118 0.006373 0.18% main() 1 0.005885 0.00611 0.006365 0.18% Gravity::get_new_grav_vector() 11 0.002933 0.003898 0.006161 0.17% Castro::swap_state_time_levels() 10 0.003362 0.004506 0.00482 0.13% Amr::coarseTimeStep() 10 0.001134 0.002622 0.003531 0.10% Castro::finalize_do_advance() 10 0.0006367 0.001973 0.002563 0.07% Gravity::get_old_grav_vector() 10 0.001485 0.001991 0.002433 0.07% Castro::buildMetrics() 1 0.001624 0.001891 0.002396 0.07% Castro::expand_state() 10 0.000646 0.000996 0.001167 0.03% Amr::InitAmr() 1 0.000269 0.000341 0.0004756 0.01% Amr::timeStep() 10 0.0001424 0.0002208 0.0004035 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002915 0.000307 0.0003456 0.01% DistributionMapping::LeastUsedCPUs() 1 6.323e-06 0.0001616 0.0002381 0.01% Castro::do_old_sources() 10 0.0001551 0.0001725 0.0001903 0.01% Castro::clean_state() 62 0.0001398 0.0001581 0.0001825 0.01% Castro::do_advance_ctu() 10 0.0001092 0.0001222 0.0001363 0.00% StateDataPhysBCFunct::() 41 9.517e-05 0.0001071 0.0001337 0.00% Castro::finalize_advance() 10 0.000101 0.0001135 0.0001278 0.00% Amr::writeSmallPlotFile() 1 2.506e-05 5.712e-05 0.0001204 0.00% Castro::enforce_consistent_e() 1 7.614e-05 8.993e-05 0.0001085 0.00% FillPatchSingleLevel 41 6.984e-05 7.736e-05 9.389e-05 0.00% Castro::construct_old_source() 50 5.043e-05 7.384e-05 9.123e-05 0.00% FabArray::ParallelCopy() 41 6.96e-05 7.709e-05 8.409e-05 0.00% Castro::do_new_sources() 10 5.948e-05 6.929e-05 8.138e-05 0.00% Amr::FinalizeInit() 1 4.068e-06 1.384e-05 8.002e-05 0.00% Castro::Castro() 1 5.424e-05 6.611e-05 7.9e-05 0.00% FabArrayBase::getCPC() 41 5.091e-05 6.022e-05 7.356e-05 0.00% Castro::subcycle_advance_ctu() 10 4.548e-05 5.395e-05 6.53e-05 0.00% Castro::construct_new_gravity() 10 3.627e-05 4.533e-05 5.92e-05 0.00% Castro::advance() 10 3.74e-05 4.544e-05 5.826e-05 0.00% Castro::apply_source_to_state() 20 4.325e-05 4.787e-05 5.609e-05 0.00% Castro::construct_old_gravity() 10 3.889e-05 4.343e-05 5.215e-05 0.00% Castro::enforce_speed_limit() 62 2.419e-05 2.851e-05 4.275e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.198e-05 2.851e-05 3.156e-05 0.00% FabArrayBase::CPC::define() 2 2.122e-05 2.485e-05 2.879e-05 0.00% Castro::check_for_nan() 20 2.078e-05 2.152e-05 2.273e-05 0.00% Castro::post_timestep() 10 1.398e-05 1.564e-05 1.832e-05 0.00% Gravity::swapTimeLevels() 10 1.253e-05 1.501e-05 1.781e-05 0.00% Amr::defBaseLevel() 1 1.211e-05 1.517e-05 1.771e-05 0.00% Amr::initSubcycle() 1 8.371e-06 1.041e-05 1.483e-05 0.00% Gravity::set_mass_offset() 10 9.335e-06 1.138e-05 1.334e-05 0.00% Castro::computeNewDt() 9 9.7e-06 1.091e-05 1.179e-05 0.00% Castro::FluxRegCrseInit 10 7.918e-06 9.103e-06 1.103e-05 0.00% Castro::create_source_corrector() 10 7.17e-06 8.566e-06 1.037e-05 0.00% Castro::retry_advance_ctu() 10 6.305e-06 6.979e-06 8.507e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.744e-06 5.195e-06 6.701e-06 0.00% Castro::computeInitialDt() 2 4.378e-06 4.959e-06 5.246e-06 0.00% Amr::InitializeInit() 1 2.174e-06 2.619e-06 5.164e-06 0.00% Castro::post_init() 1 2.767e-06 3.491e-06 4.635e-06 0.00% Castro::post_regrid() 1 1.926e-06 2.67e-06 3.607e-06 0.00% Amr::init() 1 1.68e-06 2.202e-06 2.88e-06 0.00% Castro::FluxRegFineAdd() 10 1.928e-06 2.123e-06 2.324e-06 0.00% Amr::initialInit() 1 1.408e-06 1.666e-06 2.155e-06 0.00% DistributionMapping::Distribute() 1 9.18e-07 1.108e-06 1.322e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.614 3.614 3.614 100.00% Amr::coarseTimeStep() 10 3.405 3.405 3.405 94.23% Amr::timeStep() 10 3.392 3.393 3.395 93.93% Castro::advance() 10 3.376 3.377 3.378 93.47% Castro::subcycle_advance_ctu() 10 3.283 3.295 3.302 91.36% Castro::do_advance_ctu() 10 3.282 3.295 3.302 91.36% Castro::construct_ctu_hydro_source() 10 2.509 2.511 2.515 69.59% Gravity::make_radial_gravity() 21 0.3337 0.3418 0.3546 9.81% Gravity::get_new_grav_vector() 11 0.2233 0.2263 0.2282 6.31% Castro::construct_old_gravity() 10 0.1938 0.1994 0.209 5.78% Gravity::get_old_grav_vector() 10 0.1932 0.1988 0.2085 5.77% Castro::construct_new_gravity() 10 0.1987 0.2012 0.2028 5.61% FillPatchIterator::Initialize 41 0.1605 0.1804 0.1925 5.33% Amr::init() 1 0.1908 0.191 0.1911 5.29% Castro::initialize_do_advance() 10 0.1674 0.1801 0.1909 5.28% Amr::initialInit() 1 0.1739 0.1743 0.1746 4.83% FillPatchSingleLevel 41 0.1183 0.135 0.1498 4.14% Amr::InitializeInit() 1 0.06069 0.107 0.1455 4.03% Amr::defBaseLevel() 1 0.06069 0.107 0.1455 4.03% Castro::expand_state() 10 0.1121 0.1243 0.135 3.74% check_for_negative_density() 10 0.03834 0.09718 0.1287 3.56% Castro::initData() 1 0.0441 0.08821 0.1269 3.51% Castro::clean_state() 62 0.115 0.118 0.1221 3.38% Amr::FinalizeInit() 1 0.02885 0.0673 0.1138 3.15% FabArray::ParallelCopy() 41 0.08135 0.0978 0.1122 3.10% Castro::estTimeStep() 21 0.03961 0.07139 0.1093 3.02% Castro::do_old_sources() 10 0.08949 0.09421 0.09767 2.70% Castro::initialize_advance() 10 0.07188 0.07865 0.09073 2.51% FabArray::setVal() 143 0.06466 0.07435 0.09026 2.50% amrex::Copy() 193 0.06708 0.07836 0.08681 2.40% Castro::computeInitialDt() 2 0.002044 0.04044 0.08673 2.40% Castro::do_new_sources() 10 0.06059 0.06766 0.07932 2.19% FabArray::ParallelCopy_finish() 41 0.03793 0.05591 0.07617 2.11% Castro::computeTemp() 63 0.06823 0.07063 0.0738 2.04% Castro::reset_internal_energy(MultiFab) 63 0.0486 0.05062 0.05302 1.47% Castro::reset_internal_energy(Fab) 1008 0.04825 0.05031 0.05271 1.46% FabArray::ParallelCopy_nowait() 41 0.03597 0.04181 0.04355 1.21% Castro::normalize_species() 62 0.04155 0.04203 0.04267 1.18% StateDataPhysBCFunct::() 41 0.03423 0.03711 0.03924 1.09% StateData::FillBoundary(geom) 41 0.03413 0.03701 0.03913 1.08% Castro::construct_new_source() 50 0.02908 0.03186 0.03665 1.01% Castro::finalize_do_advance() 10 0.01269 0.02436 0.03192 0.88% Castro::construct_new_gravity_source() 10 0.02281 0.0255 0.02966 0.82% Gravity::interpolate_monopole_grav() 21 0.02826 0.02854 0.02897 0.80% Amr::writePlotFile() 2 0.02731 0.0275 0.02778 0.77% Castro::post_init() 1 0.02599 0.02633 0.02654 0.73% VisMF::Write(FabArray) 2 0.01389 0.01466 0.01768 0.49% Castro::post_timestep() 10 0.01583 0.01607 0.01646 0.46% Castro::Castro() 1 0.01061 0.01199 0.01474 0.41% Castro::apply_source_to_state() 20 0.01074 0.01298 0.01365 0.38% FabArray::Saxpy() 20 0.0107 0.01293 0.0136 0.38% FabArray::setDomainBndry() 41 0.008957 0.01136 0.01286 0.36% Castro::check_for_nan() 20 0.01105 0.0117 0.01263 0.35% MultiFab::contains_nan() 20 0.01103 0.01168 0.01261 0.35% Castro::initMFs() 1 0.006972 0.008239 0.01056 0.29% Castro::construct_old_source() 50 0.007157 0.009759 0.01039 0.29% Castro::construct_old_gravity_source() 10 0.007106 0.009685 0.01031 0.29% Castro::computeNewDt() 9 0.00856 0.00857 0.008577 0.24% AmrLevel::AmrLevel(dm) 1 0.005782 0.006659 0.008364 0.23% StateData::define() 4 0.005758 0.00663 0.008334 0.23% Castro::enforce_min_density() 62 0.005887 0.006118 0.006373 0.18% Castro::swap_state_time_levels() 10 0.003362 0.004506 0.00482 0.13% Castro::finalize_advance() 10 0.002937 0.003544 0.004656 0.13% Castro::buildMetrics() 1 0.001736 0.002038 0.002616 0.07% Castro::post_regrid() 1 0.001521 0.0016 0.00167 0.05% Amr::InitAmr() 1 0.0002778 0.0003514 0.0004893 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.164e-05 0.0001679 0.0002459 0.01% DistributionMapping::LeastUsedCPUs() 1 6.323e-06 0.0001616 0.0002381 0.01% Amr::writeSmallPlotFile() 1 2.506e-05 5.712e-05 0.0001204 0.00% Castro::enforce_consistent_e() 1 7.614e-05 8.993e-05 0.0001085 0.00% FabArrayBase::getCPC() 41 7.519e-05 8.507e-05 9.843e-05 0.00% Castro::enforce_speed_limit() 62 2.419e-05 2.851e-05 4.275e-05 0.00% FabArrayBase::CPC::define() 2 2.122e-05 2.485e-05 2.879e-05 0.00% Gravity::swapTimeLevels() 10 1.253e-05 1.501e-05 1.781e-05 0.00% Amr::initSubcycle() 1 8.371e-06 1.041e-05 1.483e-05 0.00% Gravity::set_mass_offset() 10 9.335e-06 1.138e-05 1.334e-05 0.00% Castro::FluxRegCrseInit 10 7.918e-06 9.103e-06 1.103e-05 0.00% Castro::create_source_corrector() 10 7.17e-06 8.566e-06 1.037e-05 0.00% Castro::retry_advance_ctu() 10 6.305e-06 6.979e-06 8.507e-06 0.00% Castro::FluxRegFineAdd() 10 1.928e-06 2.123e-06 2.324e-06 0.00% DistributionMapping::Distribute() 1 9.18e-07 1.108e-06 1.322e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.06-25-g239d4d899334) finalized